Click here to switch to the map view.

The map label for this gene is yjiA [H]

Identifier: 158336169

GI number: 158336169

Start: 3055632

End: 3056600

Strand: Reverse

Name: yjiA [H]

Synonym: AM1_3031

Alternate gene names: 158336169

Gene position: 3056600-3055632 (Counterclockwise)

Preceding gene: 158336172

Following gene: 158336168

Centisome position: 47.0

GC content: 49.12

Gene sequence:

>969_bases
ATGGTTACCGCTGCAATAGATACCGTCCCTGTCACCGTTCTAACGGGCTATCTGGGAGCCGGAAAAACAACCTTACTCAA
CCGCATTCTCACCCACGAACATGGCAAAAAAGTAGCCGTGATTGTCAATGAATTTGGTGAGGTGGGCATTGATAATCAGC
TGGTGATCGATGCCGATGAAGAAATCTTTGAAATGAACAATGGCTGCATCTGTTGCACCGTGCGAGGCGATCTGATTCGG
ATTATTGGCAACTTGATGCGACGACGAGATAAGTTCGACCATATGGTGATTGAGACCACAGGGCTAGCGGATCCAGCTCC
GGTGATCCAGACCTTCTTTGTGGATGAAGATATGCAGACCCAGCTCAATCTGGATGCGATAGTGACGGTCGTGGATGCCA
AGCATATCCACCAGCATTGGGATGCGGATGAAGCCCAGGAGCAAATCGCTTTTGCGGATGTGGTGTTACTCAATAAAACC
GATTTAGTCAGCGAAGCGGATTTGGCGGATCTGGAAAATCGAATCCGGTCCATGAATGCCATGACCAAAATTTATCGCAC
TCAGGATGCGGCAGTGGAGATGGAGTCCATCTTAGGTGTGAGTGCCTTTGATCTAGACCGAGCTTTAGAGATCGACCCTG
AGTTTTTGGGAGAAGATGCCCATGAGCATGACGAAACCGTAGGGTCGGTGGCCTTAACAGAATCGGGGGAGATTGATGGC
GAACGGCTCAACGGTTGGCTAGGCAATCTGTTGCAAACCAAGGGGCCTGATATCTTTCGGATGAAGGGAATTTTGAATAT
TGCCGGAGAAGATCAGCGATTTGTGTTTCAGGGGGTCCATATGTTGTTTGATGGCCGTGCAGATCGCCCTTGGAAGGCTA
GCGAAACCCGCAAGAATGAGTTGGTGTTTATTGGCCGCAATTTAGATGAAGATCAGTTAAGAAAGGGGTTCCAAGCTTGC
CTCGTGTAA

Upstream 100 bases:

>100_bases
CCTTGAAAAGCTAAAGCTAAGGTAAAGTCGCCAAACTGACGTCGAAATATTTGTAGAATGATAATCGTTATCTCAACCAT
TCTCCGATGAGGTCATCGTC

Downstream 100 bases:

>100_bases
CTCAGCCACGACTTGGACGCAAATGGCGTGGGCGTTTAGATGATTATGTGACGGCCATTGCCTGGTCACCCAATAGCCAG
CAGGTGGCCGCCTGCGATGG

Product: cobalamin synthesis protein/P47K

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MVTAAIDTVPVTVLTGYLGAGKTTLLNRILTHEHGKKVAVIVNEFGEVGIDNQLVIDADEEIFEMNNGCICCTVRGDLIR
IIGNLMRRRDKFDHMVIETTGLADPAPVIQTFFVDEDMQTQLNLDAIVTVVDAKHIHQHWDADEAQEQIAFADVVLLNKT
DLVSEADLADLENRIRSMNAMTKIYRTQDAAVEMESILGVSAFDLDRALEIDPEFLGEDAHEHDETVGSVALTESGEIDG
ERLNGWLGNLLQTKGPDIFRMKGILNIAGEDQRFVFQGVHMLFDGRADRPWKASETRKNELVFIGRNLDEDQLRKGFQAC
LV

Sequences:

>Translated_322_residues
MVTAAIDTVPVTVLTGYLGAGKTTLLNRILTHEHGKKVAVIVNEFGEVGIDNQLVIDADEEIFEMNNGCICCTVRGDLIR
IIGNLMRRRDKFDHMVIETTGLADPAPVIQTFFVDEDMQTQLNLDAIVTVVDAKHIHQHWDADEAQEQIAFADVVLLNKT
DLVSEADLADLENRIRSMNAMTKIYRTQDAAVEMESILGVSAFDLDRALEIDPEFLGEDAHEHDETVGSVALTESGEIDG
ERLNGWLGNLLQTKGPDIFRMKGILNIAGEDQRFVFQGVHMLFDGRADRPWKASETRKNELVFIGRNLDEDQLRKGFQAC
LV
>Mature_322_residues
MVTAAIDTVPVTVLTGYLGAGKTTLLNRILTHEHGKKVAVIVNEFGEVGIDNQLVIDADEEIFEMNNGCICCTVRGDLIR
IIGNLMRRRDKFDHMVIETTGLADPAPVIQTFFVDEDMQTQLNLDAIVTVVDAKHIHQHWDADEAQEQIAFADVVLLNKT
DLVSEADLADLENRIRSMNAMTKIYRTQDAAVEMESILGVSAFDLDRALEIDPEFLGEDAHEHDETVGSVALTESGEIDG
ERLNGWLGNLLQTKGPDIFRMKGILNIAGEDQRFVFQGVHMLFDGRADRPWKASETRKNELVFIGRNLDEDQLRKGFQAC
LV

Specific function: Binds GTP. May function as GTP-dependent regulator [H]

COG id: COG0523

COG function: function code R; Putative GTPases (G3E family)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cobW C-terminal domain [H]

Homologues:

Organism=Homo sapiens, GI126722884, Length=338, Percent_Identity=40.2366863905325, Blast_Score=241, Evalue=7e-64,
Organism=Homo sapiens, GI33469141, Length=338, Percent_Identity=40.2366863905325, Blast_Score=241, Evalue=9e-64,
Organism=Homo sapiens, GI148727351, Length=338, Percent_Identity=40.2366863905325, Blast_Score=238, Evalue=4e-63,
Organism=Homo sapiens, GI146231952, Length=338, Percent_Identity=39.9408284023669, Blast_Score=235, Evalue=5e-62,
Organism=Homo sapiens, GI223941779, Length=332, Percent_Identity=39.4578313253012, Blast_Score=229, Evalue=3e-60,
Organism=Homo sapiens, GI223941776, Length=330, Percent_Identity=39.0909090909091, Blast_Score=223, Evalue=2e-58,
Organism=Homo sapiens, GI119120938, Length=325, Percent_Identity=36, Blast_Score=188, Evalue=7e-48,
Organism=Homo sapiens, GI310124603, Length=226, Percent_Identity=33.1858407079646, Blast_Score=113, Evalue=2e-25,
Organism=Homo sapiens, GI310124599, Length=194, Percent_Identity=35.5670103092784, Blast_Score=111, Evalue=8e-25,
Organism=Homo sapiens, GI169184311, Length=172, Percent_Identity=33.1395348837209, Blast_Score=90, Evalue=3e-18,
Organism=Escherichia coli, GI87082430, Length=318, Percent_Identity=37.4213836477987, Blast_Score=199, Evalue=3e-52,
Organism=Escherichia coli, GI1788499, Length=154, Percent_Identity=34.4155844155844, Blast_Score=92, Evalue=5e-20,
Organism=Saccharomyces cerevisiae, GI6324356, Length=364, Percent_Identity=27.7472527472527, Blast_Score=149, Evalue=8e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003495
- InterPro:   IPR011629 [H]

Pfam domain/function: PF02492 cobW; PF07683 CobW_C [H]

EC number: NA

Molecular weight: Translated: 35906; Mature: 35906

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTAAIDTVPVTVLTGYLGAGKTTLLNRILTHEHGKKVAVIVNEFGEVGIDNQLVIDADE
CCEECCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEEECCH
EIFEMNNGCICCTVRGDLIRIIGNLMRRRDKFDHMVIETTGLADPAPVIQTFFVDEDMQT
HHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHCCCCHHH
QLNLDAIVTVVDAKHIHQHWDADEAQEQIAFADVVLLNKTDLVSEADLADLENRIRSMNA
HCCHHHEEEEHHHHHHHHHCCHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHHH
MTKIYRTQDAAVEMESILGVSAFDLDRALEIDPEFLGEDAHEHDETVGSVALTESGEIDG
HHHHHHHHHHHHHHHHHHCCCHHCCCCCEECCHHHHCCCCHHHHHHHCCEEEECCCCCCH
ERLNGWLGNLLQTKGPDIFRMKGILNIAGEDQRFVFQGVHMLFDGRADRPWKASETRKNE
HHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
LVFIGRNLDEDQLRKGFQACLV
EEEEECCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MVTAAIDTVPVTVLTGYLGAGKTTLLNRILTHEHGKKVAVIVNEFGEVGIDNQLVIDADE
CCEECCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEEECCH
EIFEMNNGCICCTVRGDLIRIIGNLMRRRDKFDHMVIETTGLADPAPVIQTFFVDEDMQT
HHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHCCCCHHH
QLNLDAIVTVVDAKHIHQHWDADEAQEQIAFADVVLLNKTDLVSEADLADLENRIRSMNA
HCCHHHEEEEHHHHHHHHHCCHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHHH
MTKIYRTQDAAVEMESILGVSAFDLDRALEIDPEFLGEDAHEHDETVGSVALTESGEIDG
HHHHHHHHHHHHHHHHHHCCCHHCCCCCEECCHHHHCCCCHHHHHHHCCEEEECCCCCCH
ERLNGWLGNLLQTKGPDIFRMKGILNIAGEDQRFVFQGVHMLFDGRADRPWKASETRKNE
HHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
LVFIGRNLDEDQLRKGFQACLV
EEEEECCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 1650347 [H]