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The map label for this gene is ycjO [H]

Identifier: 158336098

GI number: 158336098

Start: 2990267

End: 2991178

Strand: Direct

Name: ycjO [H]

Synonym: AM1_2960

Alternate gene names: 158336098

Gene position: 2990267-2991178 (Clockwise)

Preceding gene: 158336096

Following gene: 158336099

Centisome position: 45.98

GC content: 50.99

Gene sequence:

>912_bases
ATGTCCAACCTCAAAACGGTTCGAGATCGGGAGAAATTGACGGGTTGGTTACTGATTACCCCCGCTTTGCTCCTCTTACT
GCTGGTCTTTGCCTATCCCATTGGTCGGGCCATTTGGTTGAGTTTGTTTACCAAAAACTTAGGCACCAACTTACAGCCTG
TTTTCACGGGCATCGGCAACTATAGCCGCATGATGGGCGACGGACGATTTTGGCAAAGTATTGGCAATACCACGATTTTT
ACTGCGATCGCAGTTAGTATCGAACTGATCCTGGGCATGGGCGTGGCCCTAGTTCTTAACCAAAGCTTTCGCGGTCGGGG
ACTCGCCAGGACCATTGCCATTTTGCCCTGGGCCTTACCCACTGCCCTCATTGGCTTGACCTGGACCTGGATTTTTAACG
ACCAGTACGGGGTATTGAACGATATCCTGCTGCGGCTGCACTTGATCCCAGAAGCCATTAACTGGTTAGGGGATCCAACC
CTGGCCTTGTTTGCCACCATCGCCGCTGATATTTGGAAAACCACCTCTTTCGTCGCTATCTTGCTACTGGCGGGATTGCA
GTCCATCTCAGAAGATCTGTACGAAGCCCATGCCATTGATGGGGCAACGCCCTGGCAGAGCTTTCGTCAAATCACCTTAC
CCCTGTTGATGCCGCAAATCTTAATTGCCGTCTTATTTCGCTTTGCTCAATCCTTTGGTGTCTTTGACCTGATTAAGGTG
ATGACCGAAGGGGGACCTGCTGGGGCGACGGAAATGGTGTCGATTTATATCTATGCCACAGTCATGCGCTACCTCGACTT
TGGCTATGGCGCTGCGTTGGTGGTCGTCACCTTTTTAGTCTTAATTGTCGCCGTTGCCATCTCAACCTTTATCCTCTCCA
AACTCCGCACCAATATCTCGGGAGCCCAGTAA

Upstream 100 bases:

>100_bases
CCAGATAACGGAGGCAGGTAATGCTGACTCGCAGTGGGTGGGACATTGTCTACTATTCTAGAGGGAAGTCTGACCCACTC
ATTTAGTGCCGAGTATGCCT

Downstream 100 bases:

>100_bases
ACCATGACCACCGACTCACCGTCCAAGCCCTCCGGGTCTCTCAAAGGGCTGCTGTTAACCAGCTCAGTTATTCTGGTGGT
TTTGTTCAGTTTGGCCCCAG

Product: sugar ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 302

Protein sequence:

>303_residues
MSNLKTVRDREKLTGWLLITPALLLLLLVFAYPIGRAIWLSLFTKNLGTNLQPVFTGIGNYSRMMGDGRFWQSIGNTTIF
TAIAVSIELILGMGVALVLNQSFRGRGLARTIAILPWALPTALIGLTWTWIFNDQYGVLNDILLRLHLIPEAINWLGDPT
LALFATIAADIWKTTSFVAILLLAGLQSISEDLYEAHAIDGATPWQSFRQITLPLLMPQILIAVLFRFAQSFGVFDLIKV
MTEGGPAGATEMVSIYIYATVMRYLDFGYGAALVVVTFLVLIVAVAISTFILSKLRTNISGAQ

Sequences:

>Translated_303_residues
MSNLKTVRDREKLTGWLLITPALLLLLLVFAYPIGRAIWLSLFTKNLGTNLQPVFTGIGNYSRMMGDGRFWQSIGNTTIF
TAIAVSIELILGMGVALVLNQSFRGRGLARTIAILPWALPTALIGLTWTWIFNDQYGVLNDILLRLHLIPEAINWLGDPT
LALFATIAADIWKTTSFVAILLLAGLQSISEDLYEAHAIDGATPWQSFRQITLPLLMPQILIAVLFRFAQSFGVFDLIKV
MTEGGPAGATEMVSIYIYATVMRYLDFGYGAALVVVTFLVLIVAVAISTFILSKLRTNISGAQ
>Mature_302_residues
SNLKTVRDREKLTGWLLITPALLLLLLVFAYPIGRAIWLSLFTKNLGTNLQPVFTGIGNYSRMMGDGRFWQSIGNTTIFT
AIAVSIELILGMGVALVLNQSFRGRGLARTIAILPWALPTALIGLTWTWIFNDQYGVLNDILLRLHLIPEAINWLGDPTL
ALFATIAADIWKTTSFVAILLLAGLQSISEDLYEAHAIDGATPWQSFRQITLPLLMPQILIAVLFRFAQSFGVFDLIKVM
TEGGPAGATEMVSIYIYATVMRYLDFGYGAALVVVTFLVLIVAVAISTFILSKLRTNISGAQ

Specific function: Probably part of the binding-protein-dependent transport system ycjNOP. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=274, Percent_Identity=31.7518248175182, Blast_Score=154, Evalue=9e-39,
Organism=Escherichia coli, GI1790465, Length=259, Percent_Identity=32.4324324324324, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI1789861, Length=293, Percent_Identity=29.6928327645051, Blast_Score=111, Evalue=7e-26,
Organism=Escherichia coli, GI1788764, Length=223, Percent_Identity=28.6995515695067, Blast_Score=68, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33329; Mature: 33198

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNLKTVRDREKLTGWLLITPALLLLLLVFAYPIGRAIWLSLFTKNLGTNLQPVFTGIGN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCH
YSRMMGDGRFWQSIGNTTIFTAIAVSIELILGMGVALVLNQSFRGRGLARTIAILPWALP
HHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
TALIGLTWTWIFNDQYGVLNDILLRLHLIPEAINWLGDPTLALFATIAADIWKTTSFVAI
HHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
LLLAGLQSISEDLYEAHAIDGATPWQSFRQITLPLLMPQILIAVLFRFAQSFGVFDLIKV
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
MTEGGPAGATEMVSIYIYATVMRYLDFGYGAALVVVTFLVLIVAVAISTFILSKLRTNIS
HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GAQ
CCC
>Mature Secondary Structure 
SNLKTVRDREKLTGWLLITPALLLLLLVFAYPIGRAIWLSLFTKNLGTNLQPVFTGIGN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCH
YSRMMGDGRFWQSIGNTTIFTAIAVSIELILGMGVALVLNQSFRGRGLARTIAILPWALP
HHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
TALIGLTWTWIFNDQYGVLNDILLRLHLIPEAINWLGDPTLALFATIAADIWKTTSFVAI
HHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
LLLAGLQSISEDLYEAHAIDGATPWQSFRQITLPLLMPQILIAVLFRFAQSFGVFDLIKV
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
MTEGGPAGATEMVSIYIYATVMRYLDFGYGAALVVVTFLVLIVAVAISTFILSKLRTNIS
HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GAQ
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]