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The map label for this gene is 158335838

Identifier: 158335838

GI number: 158335838

Start: 2728203

End: 2728763

Strand: Direct

Name: 158335838

Synonym: AM1_2696

Alternate gene names: NA

Gene position: 2728203-2728763 (Clockwise)

Preceding gene: 158335837

Following gene: 158335839

Centisome position: 41.95

GC content: 47.59

Gene sequence:

>561_bases
GTGGATCGATATTTTTTAGCTCTCCTTCCTCCTGAAGATATTCAGGAGGAAGTTTGCTGTATACAACAAAAATTTGCAGA
ACAGTATCAAAGTTGCAAAGCACTCAATTCTCCACCTCACATCACGCTGCAACCTCCGTTTGACTGGCCACCCGATGCGA
GCACTGCTCATCCACCCATTACAGCTTTAATCCAAGGGCTAACGGCATGGGCTCACTCTCTCCAACCATGGCCCGTTCAA
CTCTCGGGGTTTAATGTTTTTGAGCCCCGCGTTATTTATATCCATGTGCAGCCCACACCAGCTTTACTCGCCTTACAGAC
CCAGCTGCAACACTATTGTGCAACGGTTTGGGATATCAGAGACACTCGATTGCAGTCTCGATCGTTCATTCCTCATATGA
CCGTGGCTTTTCGCGATTTAACACGGGCTAATTTCTATGCATCATGGCCTCACTTCCAAGATCGCCCGTTTGAGCATCAC
TTTATCGCCTCCTGCTTAACCCTGCTTAAACACAATGGTCAACGCTGGGAGACATTTTCTCAAGCCATCTTTGGCGCTTA
A

Upstream 100 bases:

>100_bases
GGGTCAAGCTCCGACTATCCACTAAAGCGATTAAGACTCTTGAGAAAAAAGGTCTAGCTGCTTTCGCTCGCGAAGCTGGG
ATTAACCTTAACCAGGTTTA

Downstream 100 bases:

>100_bases
TGTTCTCCCCCTCCGACTTAAAATCCCTTGGTATCCTTAAGACATCTAGATCTTCCTGGGAAGGGTGACTGCATGACTGA
ACATCAGCCAACAATTTGTA

Product: 2',5' RNA ligase family protein

Products: NA

Alternate protein names: 2 5' RNA Ligase; 2 5' RNA Ligase Family Protein; 2-5' RNA Ligase

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MDRYFLALLPPEDIQEEVCCIQQKFAEQYQSCKALNSPPHITLQPPFDWPPDASTAHPPITALIQGLTAWAHSLQPWPVQ
LSGFNVFEPRVIYIHVQPTPALLALQTQLQHYCATVWDIRDTRLQSRSFIPHMTVAFRDLTRANFYASWPHFQDRPFEHH
FIASCLTLLKHNGQRWETFSQAIFGA

Sequences:

>Translated_186_residues
MDRYFLALLPPEDIQEEVCCIQQKFAEQYQSCKALNSPPHITLQPPFDWPPDASTAHPPITALIQGLTAWAHSLQPWPVQ
LSGFNVFEPRVIYIHVQPTPALLALQTQLQHYCATVWDIRDTRLQSRSFIPHMTVAFRDLTRANFYASWPHFQDRPFEHH
FIASCLTLLKHNGQRWETFSQAIFGA
>Mature_186_residues
MDRYFLALLPPEDIQEEVCCIQQKFAEQYQSCKALNSPPHITLQPPFDWPPDASTAHPPITALIQGLTAWAHSLQPWPVQ
LSGFNVFEPRVIYIHVQPTPALLALQTQLQHYCATVWDIRDTRLQSRSFIPHMTVAFRDLTRANFYASWPHFQDRPFEHH
FIASCLTLLKHNGQRWETFSQAIFGA

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21508; Mature: 21508

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRYFLALLPPEDIQEEVCCIQQKFAEQYQSCKALNSPPHITLQPPFDWPPDASTAHPPI
CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCH
TALIQGLTAWAHSLQPWPVQLSGFNVFEPRVIYIHVQPTPALLALQTQLQHYCATVWDIR
HHHHHHHHHHHHCCCCCCEEECCCCEECCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
DTRLQSRSFIPHMTVAFRDLTRANFYASWPHFQDRPFEHHFIASCLTLLKHNGQRWETFS
HHHHHHCCCCCHHHHHHHHHHHHCCEECCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHH
QAIFGA
HHHHCC
>Mature Secondary Structure
MDRYFLALLPPEDIQEEVCCIQQKFAEQYQSCKALNSPPHITLQPPFDWPPDASTAHPPI
CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCH
TALIQGLTAWAHSLQPWPVQLSGFNVFEPRVIYIHVQPTPALLALQTQLQHYCATVWDIR
HHHHHHHHHHHHCCCCCCEEECCCCEECCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
DTRLQSRSFIPHMTVAFRDLTRANFYASWPHFQDRPFEHHFIASCLTLLKHNGQRWETFS
HHHHHHCCCCCHHHHHHHHHHHHCCEECCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHH
QAIFGA
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA