Click here to switch to the map view.

The map label for this gene is psbE

Identifier: 158335779

GI number: 158335779

Start: 2668656

End: 2668907

Strand: Reverse

Name: psbE

Synonym: AM1_2630

Alternate gene names: 158335779

Gene position: 2668907-2668656 (Counterclockwise)

Preceding gene: 158335780

Following gene: 158339486

Centisome position: 41.04

GC content: 41.67

Gene sequence:

>252_bases
TTGTCTGGTAGAACTGGTGAACGACCCTTTGGTGATATCGTTACAAGCATTCGTTATTGGATTATCCATACCATTACGGT
ACCTATGCTGTTTTTAGCAGGATGGTTATTCGTAAGCACAGGTCTGGCTTATGACGTGTTTGGAACGCCAAGACCTAACG
AGTACTTTGACCAAGCTCGACAAGGGCTACCTTTGGTTACTGACCGTTATGAAGGTAAGCAACAAATTGATGAATTTACA
AAAGGATTATAG

Upstream 100 bases:

>100_bases
TTTGATGGTTAGCGGAAGTAAACTTCAGGTTTTACTTGTGGGACGTCCGATGGTTTCGTATGATTAAGTATCATGACTGT
GTTCATAGGAGGTGTTTGAA

Downstream 100 bases:

>100_bases
TTATAACAATGACCAGTAGACTTTCAAAAGAACCGGTTACATATCCAGTTTTTACAGTGCGTTGGTTGGCTGTTCATACC
CTAGGTGTCCCGGTTACCTT

Product: cytochrome b559 subunit alpha

Products: NA

Alternate protein names: PSII reaction center subunit V

Number of amino acids: Translated: 83; Mature: 82

Protein sequence:

>83_residues
MSGRTGERPFGDIVTSIRYWIIHTITVPMLFLAGWLFVSTGLAYDVFGTPRPNEYFDQARQGLPLVTDRYEGKQQIDEFT
KGL

Sequences:

>Translated_83_residues
MSGRTGERPFGDIVTSIRYWIIHTITVPMLFLAGWLFVSTGLAYDVFGTPRPNEYFDQARQGLPLVTDRYEGKQQIDEFT
KGL
>Mature_82_residues
SGRTGERPFGDIVTSIRYWIIHTITVPMLFLAGWLFVSTGLAYDVFGTPRPNEYFDQARQGLPLVTDRYEGKQQIDEFTK
GL

Specific function: This b-type cytochrome is tightly associated with the reaction center of photosystem II and possibly is part of the water-oxidation complex

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Single-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbE/psbF family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSBE_ACAM1 (B0C6T2)

Other databases:

- EMBL:   CP000828
- RefSeq:   YP_001516952.1
- ProteinModelPortal:   B0C6T2
- SMR:   B0C6T2
- GeneID:   5685233
- GenomeReviews:   CP000828_GR
- KEGG:   amr:AM1_2630
- HOGENOM:   HBG284226
- OMA:   TPRPNEY
- ProtClustDB:   PRK02557
- BioCyc:   AMAR329726:AM1_2630-MONOMER
- GO:   GO:0009536
- GO:   GO:0006810
- HAMAP:   MF_00642
- InterPro:   IPR006217
- InterPro:   IPR006216
- InterPro:   IPR013081
- InterPro:   IPR013082
- PIRSF:   PIRSF000036
- TIGRFAMs:   TIGR01332

Pfam domain/function: PF00283 Cytochrom_B559; PF00284 Cytochrom_B559a

EC number: NA

Molecular weight: Translated: 9487; Mature: 9356

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: PS00537 CYTOCHROME_B559

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x106ddb64)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGRTGERPFGDIVTSIRYWIIHTITVPMLFLAGWLFVSTGLAYDVFGTPRPNEYFDQAR
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCHHHHHHHH
QGLPLVTDRYEGKQQIDEFTKGL
CCCCCCCCCCCCHHHHHHHHCCH
>Mature Secondary Structure 
SGRTGERPFGDIVTSIRYWIIHTITVPMLFLAGWLFVSTGLAYDVFGTPRPNEYFDQAR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCHHHHHHHH
QGLPLVTDRYEGKQQIDEFTKGL
CCCCCCCCCCCCHHHHHHHHCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA