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The map label for this gene is 158335780

Identifier: 158335780

GI number: 158335780

Start: 2669038

End: 2670051

Strand: Reverse

Name: 158335780

Synonym: AM1_2631

Alternate gene names: NA

Gene position: 2670051-2669038 (Counterclockwise)

Preceding gene: 158335781

Following gene: 158335779

Centisome position: 41.05

GC content: 47.34

Gene sequence:

>1014_bases
ATGATAAAAGCAATTCTAAAGACTTCAAGGCAATGGATATCTATCATTGCCGCTCTATTTTTCTTAACTGCCTGCAACAG
CCTGCCAGTTTTGGATTCCCTTTCTTGGGAAACCGTCGCATTGCCGACTGACTCTACTGTCTTAGACGTCGATTTTGCGT
CTCCAGACCATGGTTGGCTAGTGGGAACCAGCTCTGCCCTCTTAGAAACCTTTGATGGGGGTAAATCTTGGGAGCAGCGT
CCTCTTGCCCTAGGAGACTTAGATTACCGCTTTTCATCCATCAGCTTTTCTGGTGATGAAGGTTGGATTGTGGGTGAGCC
CTCTATTCTGCTCCATACGACAGATGGCGGAAAGTCTTGGTCACGGGTGTCTCTCAGTACCCAACTCCCTGGGACTCCTT
ATCAAGTGACTGCTTTAGGGCCCAAATCGGTAGAGATGATCACCGACCTTGGTGCTATTTACCGCACTCAAGATGAGGCT
CAGCATTGGACAGCCTTAGTTGAAGAGGCTACGGGAGCAACGCGAAATATTAACCGTTCGGAAGATGGTAAGTATGTCGC
CATTTCTTCTCGGGGAAGTTTTTATACCACGTTTTATCCTGGCGAGACCTCTTGGCAAAGCCATGATCGGAATGGTGCTA
GACGGATTCAAACCATGGGATTTGATCCGAATGGCAACCCTTGGATTTTGAACAAAGGTGGACAGGTTCAATTTAGTAAC
GGGTTTCTCGAAGATGGAGATTATGCCTGGGACGAAGCATTTACCCCTGGCACTAACAAAATTGGACTCTTAGATTTGGC
TTATCGGACTCCTGATGAAGTTTGGATCTCAGGGGGGAGTGGCACATTACTTTGTAGCCTAGATGGTGGCCAAACTTGGC
AGAAAGATTCGACGGTAGAGGATGTGCCATCCAACCTCTACAAGATTATTTTTGTCTCATCTGACCAAGGGTTCATTATT
GGGCAATCCGGAACGCTATTGCGTTTCATTGCTCCCCCTAAAGCATCTGCTTAG

Upstream 100 bases:

>100_bases
AACTCGTTCCCTTACCCATCCGCGAAGAGATGCTTTGTGCCAATTGCAAAAATCCTAATTACTCAATTGGCTGGTACGCT
ATCGCCCGTTCAAAAACAAG

Downstream 100 bases:

>100_bases
AGGGTATTCAGTCCTCCGCTGTCTTCTTGTTTTGATGGTTAGCGGAAGTAAACTTCAGGTTTTACTTGTGGGACGTCCGA
TGGTTTCGTATGATTAAGTA

Product: Ycf48-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MIKAILKTSRQWISIIAALFFLTACNSLPVLDSLSWETVALPTDSTVLDVDFASPDHGWLVGTSSALLETFDGGKSWEQR
PLALGDLDYRFSSISFSGDEGWIVGEPSILLHTTDGGKSWSRVSLSTQLPGTPYQVTALGPKSVEMITDLGAIYRTQDEA
QHWTALVEEATGATRNINRSEDGKYVAISSRGSFYTTFYPGETSWQSHDRNGARRIQTMGFDPNGNPWILNKGGQVQFSN
GFLEDGDYAWDEAFTPGTNKIGLLDLAYRTPDEVWISGGSGTLLCSLDGGQTWQKDSTVEDVPSNLYKIIFVSSDQGFII
GQSGTLLRFIAPPKASA

Sequences:

>Translated_337_residues
MIKAILKTSRQWISIIAALFFLTACNSLPVLDSLSWETVALPTDSTVLDVDFASPDHGWLVGTSSALLETFDGGKSWEQR
PLALGDLDYRFSSISFSGDEGWIVGEPSILLHTTDGGKSWSRVSLSTQLPGTPYQVTALGPKSVEMITDLGAIYRTQDEA
QHWTALVEEATGATRNINRSEDGKYVAISSRGSFYTTFYPGETSWQSHDRNGARRIQTMGFDPNGNPWILNKGGQVQFSN
GFLEDGDYAWDEAFTPGTNKIGLLDLAYRTPDEVWISGGSGTLLCSLDGGQTWQKDSTVEDVPSNLYKIIFVSSDQGFII
GQSGTLLRFIAPPKASA
>Mature_337_residues
MIKAILKTSRQWISIIAALFFLTACNSLPVLDSLSWETVALPTDSTVLDVDFASPDHGWLVGTSSALLETFDGGKSWEQR
PLALGDLDYRFSSISFSGDEGWIVGEPSILLHTTDGGKSWSRVSLSTQLPGTPYQVTALGPKSVEMITDLGAIYRTQDEA
QHWTALVEEATGATRNINRSEDGKYVAISSRGSFYTTFYPGETSWQSHDRNGARRIQTMGFDPNGNPWILNKGGQVQFSN
GFLEDGDYAWDEAFTPGTNKIGLLDLAYRTPDEVWISGGSGTLLCSLDGGQTWQKDSTVEDVPSNLYKIIFVSSDQGFII
GQSGTLLRFIAPPKASA

Specific function: Unknown. The ortholog in A.thaliana is involved in photosystem II (PSII) assembly, but knockout of the corresponding gene in Synechoccus PCC 7002 has no effect on PSII activity [H]

COG id: COG4447

COG function: function code R; Uncharacterized protein related to plant photosystem II stability/assembly factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 BNR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002860
- InterPro:   IPR016705 [H]

Pfam domain/function: PF02012 BNR [H]

EC number: NA

Molecular weight: Translated: 36758; Mature: 36758

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKAILKTSRQWISIIAALFFLTACNSLPVLDSLSWETVALPTDSTVLDVDFASPDHGWL
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCEE
VGTSSALLETFDGGKSWEQRPLALGDLDYRFSSISFSGDEGWIVGEPSILLHTTDGGKSW
EECHHHHHHHCCCCCCCCCCCCEECCCCEEEEEEEECCCCCEEEECCEEEEEECCCCCCE
SRVSLSTQLPGTPYQVTALGPKSVEMITDLGAIYRTQDEAQHWTALVEEATGATRNINRS
EEEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC
EDGKYVAISSRGSFYTTFYPGETSWQSHDRNGARRIQTMGFDPNGNPWILNKGGQVQFSN
CCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCEEEECC
GFLEDGDYAWDEAFTPGTNKIGLLDLAYRTPDEVWISGGSGTLLCSLDGGQTWQKDSTVE
CCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEECCCCEEEEEECCCCCCCCCCCHH
DVPSNLYKIIFVSSDQGFIIGQSGTLLRFIAPPKASA
HCCCCEEEEEEEECCCCEEEECCCCEEEEECCCCCCC
>Mature Secondary Structure
MIKAILKTSRQWISIIAALFFLTACNSLPVLDSLSWETVALPTDSTVLDVDFASPDHGWL
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCEE
VGTSSALLETFDGGKSWEQRPLALGDLDYRFSSISFSGDEGWIVGEPSILLHTTDGGKSW
EECHHHHHHHCCCCCCCCCCCCEECCCCEEEEEEEECCCCCEEEECCEEEEEECCCCCCE
SRVSLSTQLPGTPYQVTALGPKSVEMITDLGAIYRTQDEAQHWTALVEEATGATRNINRS
EEEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC
EDGKYVAISSRGSFYTTFYPGETSWQSHDRNGARRIQTMGFDPNGNPWILNKGGQVQFSN
CCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCEEEECC
GFLEDGDYAWDEAFTPGTNKIGLLDLAYRTPDEVWISGGSGTLLCSLDGGQTWQKDSTVE
CCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEECCCCEEEEEECCCCCCCCCCCHH
DVPSNLYKIIFVSSDQGFIIGQSGTLLRFIAPPKASA
HCCCCEEEEEEEECCCCEEEECCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12240834 [H]