Click here to switch to the map view.

The map label for this gene is cph1 [H]

Identifier: 158334890

GI number: 158334890

Start: 1712343

End: 1713188

Strand: Reverse

Name: cph1 [H]

Synonym: AM1_1727

Alternate gene names: 158334890

Gene position: 1713188-1712343 (Counterclockwise)

Preceding gene: 158334891

Following gene: 158334889

Centisome position: 26.34

GC content: 48.82

Gene sequence:

>846_bases
GTGCTCGTCATTATCGTTGGCTATGCTCAAGCCGTTCTGATACGGCAGGAAAAAGCCAAGCAGGAAGCTGAAGCCAAACT
AGCAGAAGAGTCTGAGGCGCTAGCTCGTTCGAATGAAGCCTTACTCCGCTCCAATAAGGAATTAGAACAATTTGCCTATG
TAGCCTCCCATGATTTACAAGAGCCCCTCCGCAAAATTGAGGCCTTTGGTGATCGATTACAAACGAAATGTAGAGATGAT
CTGAGCGATCGGGGGAAAGATTATGTGGACCGTATGCAAAAAGCGGCGGGTCGCATGCGGCAACTGGTGCAGAACCTATT
AGCTTTTTCTCGAGTGACGTCAAAGTCACAACCCTTTACTGAAGTCGATCTCAATGAAGTGGTGGGCAGCGTTTTAGATG
ATCTGGAAATTCGGATTCAGGAAACGGAGGCCCAGGTTGAGGTGACTGCGTTACCTACGATTGATGCGGAACCGATGCAA
ATTCGCCAACTGTTTCAAAACCTGATTAGCAATGCTCTCAAGTTTCGTCAGCCGGATCAGCCCCTCTGCATCACGATTGG
CGGGCAGTCGGTTAATGAAAGTACTGAGACCGAGAGCCTGTACCAAATCAGCGTTGAAGATAATGGCATTGGCTTTGAGC
AAAAGTATACGGACCGTATTTTTCGAGTGTTTCAGCGTTTACATAGTCGCAATGAATATGATGGCACGGGCATTGGCCTA
GCGGTCTGTGCCAAAATAGCCGAGCATCATGGTGGCACCATCACCGCTGAAAGTTCACCGGGCCAAGGCGCAACATTTTT
CATCACCTTACCGCTTACCCAAACCTCCATGGAGCCCCAATCATGA

Upstream 100 bases:

>100_bases
CGAGGTCTATAGCAATGTCACACCGCTCGTACAACAGGTAGAAGATGCTCAGCAAGAAGGGCTGATCGCCGTTATCGTTA
TCTTTGTCGGGCTATATGGG

Downstream 100 bases:

>100_bases
CCTCAGTCAATGCTGCCCCGATTACGATTTTGATGGCTGACGATGATGAAGATGATCGGATGCTCACGGCCGAAGCTTTA
GAGGAGAGCCGACTGAGTAA

Product: signal transduction histidine kinase

Products: NA

Alternate protein names: Bacteriophytochrome cph1; Light-regulated histidine kinase 1 [H]

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MLVIIVGYAQAVLIRQEKAKQEAEAKLAEESEALARSNEALLRSNKELEQFAYVASHDLQEPLRKIEAFGDRLQTKCRDD
LSDRGKDYVDRMQKAAGRMRQLVQNLLAFSRVTSKSQPFTEVDLNEVVGSVLDDLEIRIQETEAQVEVTALPTIDAEPMQ
IRQLFQNLISNALKFRQPDQPLCITIGGQSVNESTETESLYQISVEDNGIGFEQKYTDRIFRVFQRLHSRNEYDGTGIGL
AVCAKIAEHHGGTITAESSPGQGATFFITLPLTQTSMEPQS

Sequences:

>Translated_281_residues
MLVIIVGYAQAVLIRQEKAKQEAEAKLAEESEALARSNEALLRSNKELEQFAYVASHDLQEPLRKIEAFGDRLQTKCRDD
LSDRGKDYVDRMQKAAGRMRQLVQNLLAFSRVTSKSQPFTEVDLNEVVGSVLDDLEIRIQETEAQVEVTALPTIDAEPMQ
IRQLFQNLISNALKFRQPDQPLCITIGGQSVNESTETESLYQISVEDNGIGFEQKYTDRIFRVFQRLHSRNEYDGTGIGL
AVCAKIAEHHGGTITAESSPGQGATFFITLPLTQTSMEPQS
>Mature_281_residues
MLVIIVGYAQAVLIRQEKAKQEAEAKLAEESEALARSNEALLRSNKELEQFAYVASHDLQEPLRKIEAFGDRLQTKCRDD
LSDRGKDYVDRMQKAAGRMRQLVQNLLAFSRVTSKSQPFTEVDLNEVVGSVLDDLEIRIQETEAQVEVTALPTIDAEPMQ
IRQLFQNLISNALKFRQPDQPLCITIGGQSVNESTETESLYQISVEDNGIGFEQKYTDRIFRVFQRLHSRNEYDGTGIGL
AVCAKIAEHHGGTITAESSPGQGATFFITLPLTQTSMEPQS

Specific function: Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region. Has also a slight blue shift

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1790436, Length=238, Percent_Identity=30.672268907563, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI145693157, Length=259, Percent_Identity=27.4131274131274, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786912, Length=251, Percent_Identity=31.0756972111554, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI48994928, Length=252, Percent_Identity=28.5714285714286, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1789149, Length=231, Percent_Identity=24.2424242424242, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1788549, Length=226, Percent_Identity=26.9911504424779, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1790346, Length=227, Percent_Identity=25.9911894273128, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790861, Length=235, Percent_Identity=26.8085106382979, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081816, Length=116, Percent_Identity=32.7586206896552, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788713, Length=231, Percent_Identity=24.6753246753247, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789808, Length=223, Percent_Identity=25.1121076233184, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788393, Length=256, Percent_Identity=25.390625, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1788279, Length=243, Percent_Identity=25.5144032921811, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786783, Length=180, Percent_Identity=27.7777777777778, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR000014
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 31438; Mature: 31438

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVIIVGYAQAVLIRQEKAKQEAEAKLAEESEALARSNEALLRSNKELEQFAYVASHDLQ
CEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHH
EPLRKIEAFGDRLQTKCRDDLSDRGKDYVDRMQKAAGRMRQLVQNLLAFSRVTSKSQPFT
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
EVDLNEVVGSVLDDLEIRIQETEAQVEVTALPTIDAEPMQIRQLFQNLISNALKFRQPDQ
CCCHHHHHHHHHHHHHHEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCC
PLCITIGGQSVNESTETESLYQISVEDNGIGFEQKYTDRIFRVFQRLHSRNEYDGTGIGL
CEEEEECCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH
AVCAKIAEHHGGTITAESSPGQGATFFITLPLTQTSMEPQS
HHHHHHHHHCCCEEEECCCCCCCCEEEEEEECCCCCCCCCC
>Mature Secondary Structure
MLVIIVGYAQAVLIRQEKAKQEAEAKLAEESEALARSNEALLRSNKELEQFAYVASHDLQ
CEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHH
EPLRKIEAFGDRLQTKCRDDLSDRGKDYVDRMQKAAGRMRQLVQNLLAFSRVTSKSQPFT
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
EVDLNEVVGSVLDDLEIRIQETEAQVEVTALPTIDAEPMQIRQLFQNLISNALKFRQPDQ
CCCHHHHHHHHHHHHHHEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCC
PLCITIGGQSVNESTETESLYQISVEDNGIGFEQKYTDRIFRVFQRLHSRNEYDGTGIGL
CEEEEECCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH
AVCAKIAEHHGGTITAESSPGQGATFFITLPLTQTSMEPQS
HHHHHHHHHCCCEEEECCCCCCCCEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 9109482; 9278513; 10828948 [H]