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The map label for this gene is sufC [C]

Identifier: 158334402

GI number: 158334402

Start: 1203229

End: 1204017

Strand: Reverse

Name: sufC [C]

Synonym: AM1_1223

Alternate gene names: 158334402

Gene position: 1204017-1203229 (Counterclockwise)

Preceding gene: 158334403

Following gene: 158334401

Centisome position: 18.51

GC content: 49.68

Gene sequence:

>789_bases
GTGATTATTGACAATAGCGACGTGATTCTGTCGGTCCGTAATTTGACGGCCGATGTGGATGGAACCCCGATTCTGAAGGG
GTTAAATCTAGAAATTAAGGCGGGAGAAATCCATGCCATTATGGGGCCGAATGGATCGGGAAAAAGTACCTTTTCTAAGG
TATTGGCCGGACACCCTGCCTATACGGTTACTGGCGGCGAGGTCATTTATAAGGGGCAGAACCTACTGGAACTAGAACCA
GAAGAACGGTCCCGCTCCGGTGTGTTTCTGGCCTTTCAATATCCCTTAGAAATTCCTGGAGTGAGTAATCTCGACTTCCT
GCGGGTGTCCTTTAATTCCAAGCGCCAGCATGAAGGTTTAGAAGAGCTAGACGCCTTTGATTTTGATGATTTGGTGCGGG
AACGCTTAGACGTAGTCAAAATGGACCCGGCCTTCCTCGATCGCAGTGTGAATGAAGGCTTTTCTGGTGGTGAAAAGAAG
CGCAACGAAATCTTGCAGATGGCCCTTCTTGAACCGACTTTAGCCATTCTGGATGAAACGGATTCAGGTCTAGATATTGA
TGCCCTCAAGATTGTCGCCAATGGGGTGAATCAGCTGGCTAAGCCGGAAAATGCCACCCTGATGATTACCCACTATCAGC
GCTTGCTGGACTATATCGTCCCTGACTTTGTGCATGTGATGGCCGAGGGCAAAATCTTGACCACGGGCGGCAAGGAACTG
GCCCAAGAGCTGGAAGCCAAAGGCTATGACTGGGTGAAAGCAGAAGATGTGGCTGAGGTGGCAGTCTAA

Upstream 100 bases:

>100_bases
GGAAGCCGATCGGCTTTTAAGCCTGAAGTTAGAAGGAAGTGTGGGATAAGGTTTCTCACCAAAGCAGTACTAGACGTTAG
ACGCAGTTAGAGGTTCAGGC

Downstream 100 bases:

>100_bases
TGACCGTAGAAGTAAACCCCGAAGCCGTCGCGCCTAGCTCCTCAGCAGCCCAGGATCGGCAAGCCTATTTGACCCATCTT
CTCGCCCAGCGGCCCAATCC

Product: FeS assembly ATPase SufC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MIIDNSDVILSVRNLTADVDGTPILKGLNLEIKAGEIHAIMGPNGSGKSTFSKVLAGHPAYTVTGGEVIYKGQNLLELEP
EERSRSGVFLAFQYPLEIPGVSNLDFLRVSFNSKRQHEGLEELDAFDFDDLVRERLDVVKMDPAFLDRSVNEGFSGGEKK
RNEILQMALLEPTLAILDETDSGLDIDALKIVANGVNQLAKPENATLMITHYQRLLDYIVPDFVHVMAEGKILTTGGKEL
AQELEAKGYDWVKAEDVAEVAV

Sequences:

>Translated_262_residues
MIIDNSDVILSVRNLTADVDGTPILKGLNLEIKAGEIHAIMGPNGSGKSTFSKVLAGHPAYTVTGGEVIYKGQNLLELEP
EERSRSGVFLAFQYPLEIPGVSNLDFLRVSFNSKRQHEGLEELDAFDFDDLVRERLDVVKMDPAFLDRSVNEGFSGGEKK
RNEILQMALLEPTLAILDETDSGLDIDALKIVANGVNQLAKPENATLMITHYQRLLDYIVPDFVHVMAEGKILTTGGKEL
AQELEAKGYDWVKAEDVAEVAV
>Mature_262_residues
MIIDNSDVILSVRNLTADVDGTPILKGLNLEIKAGEIHAIMGPNGSGKSTFSKVLAGHPAYTVTGGEVIYKGQNLLELEP
EERSRSGVFLAFQYPLEIPGVSNLDFLRVSFNSKRQHEGLEELDAFDFDDLVRERLDVVKMDPAFLDRSVNEGFSGGEKK
RNEILQMALLEPTLAILDETDSGLDIDALKIVANGVNQLAKPENATLMITHYQRLLDYIVPDFVHVMAEGKILTTGGKEL
AQELEAKGYDWVKAEDVAEVAV

Specific function: Unknown

COG id: COG0396

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Gene ontology:
GO:0000166: FeS assembly ATPase SufC
GO:0005524: FeS assembly ATPase SufC
GO:0006200: FeS assembly ATPase SufC
GO:0006810: FeS assembly ATPase SufC
GO:0016887: FeS assembly ATPase SufC
GO:0017111: FeS assembly ATPase SufC

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Escherichia coli, GI1787972, Length=247, Percent_Identity=56.2753036437247, Blast_Score=295, Evalue=2e-81,
Organism=Escherichia coli, GI1786345, Length=222, Percent_Identity=28.3783783783784, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1789864, Length=245, Percent_Identity=26.9387755102041, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1787500, Length=218, Percent_Identity=28.4403669724771, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789891, Length=221, Percent_Identity=30.316742081448, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87081709, Length=232, Percent_Identity=26.2931034482759, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787370, Length=218, Percent_Identity=25.6880733944954, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI48994883, Length=247, Percent_Identity=30.3643724696356, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788761, Length=224, Percent_Identity=25, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787792, Length=95, Percent_Identity=35.7894736842105, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787143, Length=229, Percent_Identity=28.82096069869, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1786698, Length=204, Percent_Identity=27.4509803921569, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI87082267, Length=210, Percent_Identity=27.6190476190476, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI87081791, Length=234, Percent_Identity=26.4957264957265, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI212646699, Length=234, Percent_Identity=30.3418803418803, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71996809, Length=234, Percent_Identity=30.3418803418803, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI193211017, Length=234, Percent_Identity=29.9145299145299, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17567265, Length=241, Percent_Identity=26.5560165975104, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI25146777, Length=239, Percent_Identity=28.8702928870293, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI193211015, Length=234, Percent_Identity=29.9145299145299, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17541710, Length=221, Percent_Identity=27.1493212669683, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI193209708, Length=220, Percent_Identity=28.1818181818182, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR010230 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 28784; Mature: 28784

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIDNSDVILSVRNLTADVDGTPILKGLNLEIKAGEIHAIMGPNGSGKSTFSKVLAGHPA
CEECCCCEEEEEEEEEECCCCCCEEECCCEEEECCEEEEEECCCCCCHHHHHHHHHCCCC
YTVTGGEVIYKGQNLLELEPEERSRSGVFLAFQYPLEIPGVSNLDFLRVSFNSKRQHEGL
EEEECCEEEECCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCHHHCCH
EELDAFDFDDLVRERLDVVKMDPAFLDRSVNEGFSGGEKKRNEILQMALLEPTLAILDET
HHHHCCCHHHHHHHHHHEEECCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHEEEECC
DSGLDIDALKIVANGVNQLAKPENATLMITHYQRLLDYIVPDFVHVMAEGKILTTGGKEL
CCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCEEEECCHHHH
AQELEAKGYDWVKAEDVAEVAV
HHHHHHCCCCCCCHHHHHHHCC
>Mature Secondary Structure
MIIDNSDVILSVRNLTADVDGTPILKGLNLEIKAGEIHAIMGPNGSGKSTFSKVLAGHPA
CEECCCCEEEEEEEEEECCCCCCEEECCCEEEECCEEEEEECCCCCCHHHHHHHHHCCCC
YTVTGGEVIYKGQNLLELEPEERSRSGVFLAFQYPLEIPGVSNLDFLRVSFNSKRQHEGL
EEEECCEEEECCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCHHHCCH
EELDAFDFDDLVRERLDVVKMDPAFLDRSVNEGFSGGEKKRNEILQMALLEPTLAILDET
HHHHCCCHHHHHHHHHHEEECCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHEEEECC
DSGLDIDALKIVANGVNQLAKPENATLMITHYQRLLDYIVPDFVHVMAEGKILTTGGKEL
CCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCEEEECCHHHH
AQELEAKGYDWVKAEDVAEVAV
HHHHHHCCCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]