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The map label for this gene is sufD [C]

Identifier: 158334401

GI number: 158334401

Start: 1201925

End: 1203229

Strand: Reverse

Name: sufD [C]

Synonym: AM1_1222

Alternate gene names: 158334401

Gene position: 1203229-1201925 (Counterclockwise)

Preceding gene: 158334402

Following gene: 158334400

Centisome position: 18.5

GC content: 53.56

Gene sequence:

>1305_bases
ATGACCGTAGAAGTAAACCCCGAAGCCGTCGCGCCTAGCTCCTCAGCAGCCCAGGATCGGCAAGCCTATTTGACCCATCT
TCTCGCCCAGCGGCCCAATCCGCAGGGGCTGGAAAAAGTACGAGAGGGTGCCCTCAGCATTGTGCAAGAGCGGGGTCTGC
CCAGTAACCGGGATGAGGACTGGCGATTTACAGATCTGTCGGGTCTGTACAAAACCGCTTTTACTGCTCCTACTGCTGCG
TCGCTATCCCTAGAGGAGATTGACGCCTTTATCTTGGCAGAGGCCCCAGTCCGACTGGTATTTGTAAATGGCTGGTTTGC
TCCTGATTTATCTACGATCGATCACTTGCCTGCTGGGTTAAGCGTCAGTACCCTAGCGGATGCAGGCAACCTACCTGAGC
TAGGACAGCAGCCAGGACTGTCAGAAGTCTTTACGGCTCTCAATACCGCTAGCTTTGCCGATGTTGCCGTCTTACGCATT
GCCAAAAATCAGGTCATTGAAGCCCCCATCCATCTGTTGTATTTGACCACAGGGGATACACCGATAATCACCTCGCCTCG
GGGGCTGGTGATAGCTGAAGCTAATAGTGCGGCCACCTTAATAGAAGAATATGCAGCGGTCAACGCAGCGTCCTACTTTA
CGAACTCGGTGATGGAAGTGAGCTTGGGGCAAAATGCTCAGCTTCACCACCACCGAATTCAGCGAGAGGCGAAGACGGCC
TTTCATATCGGTACGACATCAGTATCTCAGGATCGCGATAGTCGCTATGCTCTGACGAGTTTGAGCCTGGGGGGACAGAT
GTCTCGCCATAACCCCGTGGTGGTGCCTACAGCAGAGCAGACGGATACCACTCTCAATGGATTGACCCTAGCGGTGGATC
AGCAGGTGGCCGACACCCATTCTGATCTATCCTTCACAGGTCCCCACTGTACAGCTCAGCAGTTGCATAAGTGCATCGTT
GATAACCGTGCTCGCGCGGTGTTTAATGGCCGAGTGTTTGTGCCTAAATTGGCTCAGCAGACCAATGCCAGCCAGCTGAG
CCGCAATTTGCTGCTGTCGTCCAAGGCGCGGGTGGACACCAAACCGCAACTAGAAATTATTGCCGATGACGTTAAGTGCG
CCCACGGGGCCACAGTGAGTCAGCTGGACGATGAAGAAGTCTTTTATTTACAAAGCCGGGGGTTAGACCGCAATAGCGCT
TGCGATTTGCTGGTCGAGGGGTTTGCGGCGGAAATTATTGATCAATTGCCCATTGCTGAACAGCGCCAGACTTTGCTGAA
CGCTGTGTTGTCCCAAATACGTTAG

Upstream 100 bases:

>100_bases
GCAAAATCTTGACCACGGGCGGCAAGGAACTGGCCCAAGAGCTGGAAGCCAAAGGCTATGACTGGGTGAAAGCAGAAGAT
GTGGCTGAGGTGGCAGTCTA

Downstream 100 bases:

>100_bases
ATTCGTGATTCTGCACCTATGATTGCCATCCAAGAAAAGTCTCTAGCCCTTCAGGTTCGTCCTGACTTTCCCATTTTGCA
TCAGCAGATTCAGGAGAGTC

Product: FeS assembly protein SufD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 434; Mature: 433

Protein sequence:

>434_residues
MTVEVNPEAVAPSSSAAQDRQAYLTHLLAQRPNPQGLEKVREGALSIVQERGLPSNRDEDWRFTDLSGLYKTAFTAPTAA
SLSLEEIDAFILAEAPVRLVFVNGWFAPDLSTIDHLPAGLSVSTLADAGNLPELGQQPGLSEVFTALNTASFADVAVLRI
AKNQVIEAPIHLLYLTTGDTPIITSPRGLVIAEANSAATLIEEYAAVNAASYFTNSVMEVSLGQNAQLHHHRIQREAKTA
FHIGTTSVSQDRDSRYALTSLSLGGQMSRHNPVVVPTAEQTDTTLNGLTLAVDQQVADTHSDLSFTGPHCTAQQLHKCIV
DNRARAVFNGRVFVPKLAQQTNASQLSRNLLLSSKARVDTKPQLEIIADDVKCAHGATVSQLDDEEVFYLQSRGLDRNSA
CDLLVEGFAAEIIDQLPIAEQRQTLLNAVLSQIR

Sequences:

>Translated_434_residues
MTVEVNPEAVAPSSSAAQDRQAYLTHLLAQRPNPQGLEKVREGALSIVQERGLPSNRDEDWRFTDLSGLYKTAFTAPTAA
SLSLEEIDAFILAEAPVRLVFVNGWFAPDLSTIDHLPAGLSVSTLADAGNLPELGQQPGLSEVFTALNTASFADVAVLRI
AKNQVIEAPIHLLYLTTGDTPIITSPRGLVIAEANSAATLIEEYAAVNAASYFTNSVMEVSLGQNAQLHHHRIQREAKTA
FHIGTTSVSQDRDSRYALTSLSLGGQMSRHNPVVVPTAEQTDTTLNGLTLAVDQQVADTHSDLSFTGPHCTAQQLHKCIV
DNRARAVFNGRVFVPKLAQQTNASQLSRNLLLSSKARVDTKPQLEIIADDVKCAHGATVSQLDDEEVFYLQSRGLDRNSA
CDLLVEGFAAEIIDQLPIAEQRQTLLNAVLSQIR
>Mature_433_residues
TVEVNPEAVAPSSSAAQDRQAYLTHLLAQRPNPQGLEKVREGALSIVQERGLPSNRDEDWRFTDLSGLYKTAFTAPTAAS
LSLEEIDAFILAEAPVRLVFVNGWFAPDLSTIDHLPAGLSVSTLADAGNLPELGQQPGLSEVFTALNTASFADVAVLRIA
KNQVIEAPIHLLYLTTGDTPIITSPRGLVIAEANSAATLIEEYAAVNAASYFTNSVMEVSLGQNAQLHHHRIQREAKTAF
HIGTTSVSQDRDSRYALTSLSLGGQMSRHNPVVVPTAEQTDTTLNGLTLAVDQQVADTHSDLSFTGPHCTAQQLHKCIVD
NRARAVFNGRVFVPKLAQQTNASQLSRNLLLSSKARVDTKPQLEIIADDVKCAHGATVSQLDDEEVFYLQSRGLDRNSAC
DLLVEGFAAEIIDQLPIAEQRQTLLNAVLSQIR

Specific function: FhuF function [C]

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI1787971, Length=379, Percent_Identity=34.8284960422164, Blast_Score=215, Evalue=5e-57,
Organism=Escherichia coli, GI87081955, Length=302, Percent_Identity=22.1854304635762, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 46932; Mature: 46801

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVEVNPEAVAPSSSAAQDRQAYLTHLLAQRPNPQGLEKVREGALSIVQERGLPSNRDED
CEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
WRFTDLSGLYKTAFTAPTAASLSLEEIDAFILAEAPVRLVFVNGWFAPDLSTIDHLPAGL
CEEECHHHHHHHHHCCCCCCCCCHHHHHHHEEECCCEEEEEEECCCCCCCHHHHHCCCCC
SVSTLADAGNLPELGQQPGLSEVFTALNTASFADVAVLRIAKNQVIEAPIHLLYLTTGDT
CHHHHHCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCC
PIITSPRGLVIAEANSAATLIEEYAAVNAASYFTNSVMEVSLGQNAQLHHHRIQREAKTA
CEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHE
FHIGTTSVSQDRDSRYALTSLSLGGQMSRHNPVVVPTAEQTDTTLNGLTLAVDQQVADTH
EEECCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCEEEEECHHHHHCC
SDLSFTGPHCTAQQLHKCIVDNRARAVFNGRVFVPKLAQQTNASQLSRNLLLSSKARVDT
CCCCCCCCCCCHHHHHHHHHCCCCEEEECCEEEECHHHHHCCHHHHHHHHHHCCCCCCCC
KPQLEIIADDVKCAHGATVSQLDDEEVFYLQSRGLDRNSACDLLVEGFAAEIIDQLPIAE
CCCEEEEECCHHHCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCHH
QRQTLLNAVLSQIR
HHHHHHHHHHHHCC
>Mature Secondary Structure 
TVEVNPEAVAPSSSAAQDRQAYLTHLLAQRPNPQGLEKVREGALSIVQERGLPSNRDED
EEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
WRFTDLSGLYKTAFTAPTAASLSLEEIDAFILAEAPVRLVFVNGWFAPDLSTIDHLPAGL
CEEECHHHHHHHHHCCCCCCCCCHHHHHHHEEECCCEEEEEEECCCCCCCHHHHHCCCCC
SVSTLADAGNLPELGQQPGLSEVFTALNTASFADVAVLRIAKNQVIEAPIHLLYLTTGDT
CHHHHHCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCC
PIITSPRGLVIAEANSAATLIEEYAAVNAASYFTNSVMEVSLGQNAQLHHHRIQREAKTA
CEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHE
FHIGTTSVSQDRDSRYALTSLSLGGQMSRHNPVVVPTAEQTDTTLNGLTLAVDQQVADTH
EEECCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCEEEEECHHHHHCC
SDLSFTGPHCTAQQLHKCIVDNRARAVFNGRVFVPKLAQQTNASQLSRNLLLSSKARVDT
CCCCCCCCCCCHHHHHHHHHCCCCEEEECCEEEECHHHHHCCHHHHHHHHHHCCCCCCCC
KPQLEIIADDVKCAHGATVSQLDDEEVFYLQSRGLDRNSACDLLVEGFAAEIIDQLPIAE
CCCEEEEECCHHHCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCHH
QRQTLLNAVLSQIR
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]