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The map label for this gene is rcsF [H]

Identifier: 158333941

GI number: 158333941

Start: 735554

End: 736327

Strand: Direct

Name: rcsF [H]

Synonym: AM1_0755

Alternate gene names: 158333941

Gene position: 735554-736327 (Clockwise)

Preceding gene: 158333940

Following gene: 158333943

Centisome position: 11.31

GC content: 49.22

Gene sequence:

>774_bases
ATGCCGATTCCTGATCCCTTTGCCCACTTGGATACAGTATCTTTAACCCCGATTGCCTACATTCGATCTTGTTACCCTGA
ACGATTTGGCATTCCCCGACAGGCAGGCTTGGTGGAGTCTGCCAAAGCAGCCATTGTCTTTCCCAACACGGATTTGCATT
GGCATTCATTGCGAGGGATAGAGAGCTTTTCCCACATCTGGGTGATCTTTTTGCTGCATGGTCAATCCTTTACCAAGTTT
CGTCCCCTGGTGCGTCCCCCCCGTTTGGGTGGAAATAAAAGCATGGGAGTTTATGCAACTCGCAGCCCCAATCGTCCGAA
TCAAATTGGATTAAGCGCAGTGCCTTTAGATCAAGTTGAGCAGACCTCAGAGGAAATTCTGCTCCATATTCATGGCGGAG
ACTTCTTAGATGGCACACCCGTGTTAGATATCAAACCCTATGTACCCTATGCAGATGCAATCCCATCTGCAACCAGTGCT
TGGGCTGATGATGCGGATCCACTTTTGCCGGTGGTATGGAGTCCCGAAGCAATGGCCAGCCTGACCTCAGCTTTAACTCG
TGATTTTCAGGAAACCCAACAGGTAATTTCAGAGGTGATTGCCCAAGATCCTCGTCCAGGCTATGAGCGCAGGAAAGATG
GTCAGGCGGGGCAAGAGTGGAATATGCGCCTAGCTGGGTTAGATATTTTTTGGAAAGTAGAAGCAGGAACAGCGATTGTT
ACTCGACTCTTTCCTGTATCCAGTTCTGACCCTATCCCTAAACCTCAGCCTTGA

Upstream 100 bases:

>100_bases
GCCCGATTGGGAACTGAAGATCTATATTTATTGCATAATATTCGAGCCTGTATTGATCGCACCTTAGATCACCTGGAAGC
CAAGCAGGGGAATCATCACC

Downstream 100 bases:

>100_bases
GTCTGAGTTCGGATTCCATTAACGACATAAAGCAGGGGCGAAATCTTGCTGCCCTCTTCCCTGATGGCACAGATAACGAC
CACCTGCCCATTCAATTGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MPIPDPFAHLDTVSLTPIAYIRSCYPERFGIPRQAGLVESAKAAIVFPNTDLHWHSLRGIESFSHIWVIFLLHGQSFTKF
RPLVRPPRLGGNKSMGVYATRSPNRPNQIGLSAVPLDQVEQTSEEILLHIHGGDFLDGTPVLDIKPYVPYADAIPSATSA
WADDADPLLPVVWSPEAMASLTSALTRDFQETQQVISEVIAQDPRPGYERRKDGQAGQEWNMRLAGLDIFWKVEAGTAIV
TRLFPVSSSDPIPKPQP

Sequences:

>Translated_257_residues
MPIPDPFAHLDTVSLTPIAYIRSCYPERFGIPRQAGLVESAKAAIVFPNTDLHWHSLRGIESFSHIWVIFLLHGQSFTKF
RPLVRPPRLGGNKSMGVYATRSPNRPNQIGLSAVPLDQVEQTSEEILLHIHGGDFLDGTPVLDIKPYVPYADAIPSATSA
WADDADPLLPVVWSPEAMASLTSALTRDFQETQQVISEVIAQDPRPGYERRKDGQAGQEWNMRLAGLDIFWKVEAGTAIV
TRLFPVSSSDPIPKPQP
>Mature_256_residues
PIPDPFAHLDTVSLTPIAYIRSCYPERFGIPRQAGLVESAKAAIVFPNTDLHWHSLRGIESFSHIWVIFLLHGQSFTKFR
PLVRPPRLGGNKSMGVYATRSPNRPNQIGLSAVPLDQVEQTSEEILLHIHGGDFLDGTPVLDIKPYVPYADAIPSATSAW
ADDADPLLPVVWSPEAMASLTSALTRDFQETQQVISEVIAQDPRPGYERRKDGQAGQEWNMRLAGLDIFWKVEAGTAIVT
RLFPVSSSDPIPKPQP

Specific function: Unknown

COG id: COG1720

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0066 (virR) family [H]

Homologues:

Organism=Homo sapiens, GI118600979, Length=152, Percent_Identity=38.8157894736842, Blast_Score=116, Evalue=2e-26,
Organism=Escherichia coli, GI1786393, Length=225, Percent_Identity=39.5555555555556, Blast_Score=171, Evalue=6e-44,
Organism=Drosophila melanogaster, GI45552503, Length=291, Percent_Identity=29.8969072164948, Blast_Score=113, Evalue=1e-25,
Organism=Drosophila melanogaster, GI24586408, Length=148, Percent_Identity=41.8918918918919, Blast_Score=112, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001378 [H]

Pfam domain/function: PF01980 UPF0066 [H]

EC number: NA

Molecular weight: Translated: 28427; Mature: 28295

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIPDPFAHLDTVSLTPIAYIRSCYPERFGIPRQAGLVESAKAAIVFPNTDLHWHSLRGI
CCCCCCCHHCCCCCCCHHHHHHHHCHHHCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHH
ESFSHIWVIFLLHGQSFTKFRPLVRPPRLGGNKSMGVYATRSPNRPNQIGLSAVPLDQVE
HHHHHEEEEEEEECCCHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEECCHHHHH
QTSEEILLHIHGGDFLDGTPVLDIKPYVPYADAIPSATSAWADDADPLLPVVWSPEAMAS
HCCCEEEEEECCCCCCCCCCEEEECCCCCCHHCCCCCCCCCCCCCCCCEEEEECCHHHHH
LTSALTRDFQETQQVISEVIAQDPRPGYERRKDGQAGQEWNMRLAGLDIFWKVEAGTAIV
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCEEEECEEEEEEECCCCEEE
TRLFPVSSSDPIPKPQP
EEEECCCCCCCCCCCCC
>Mature Secondary Structure 
PIPDPFAHLDTVSLTPIAYIRSCYPERFGIPRQAGLVESAKAAIVFPNTDLHWHSLRGI
CCCCCCHHCCCCCCCHHHHHHHHCHHHCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHH
ESFSHIWVIFLLHGQSFTKFRPLVRPPRLGGNKSMGVYATRSPNRPNQIGLSAVPLDQVE
HHHHHEEEEEEEECCCHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEECCHHHHH
QTSEEILLHIHGGDFLDGTPVLDIKPYVPYADAIPSATSAWADDADPLLPVVWSPEAMAS
HCCCEEEEEECCCCCCCCCCEEEECCCCCCHHCCCCCCCCCCCCCCCCEEEEECCHHHHH
LTSALTRDFQETQQVISEVIAQDPRPGYERRKDGQAGQEWNMRLAGLDIFWKVEAGTAIV
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCEEEECEEEEEEECCCCEEE
TRLFPVSSSDPIPKPQP
EEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]