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The map label for this gene is yeaT [C]

Identifier: 158333823

GI number: 158333823

Start: 618707

End: 619627

Strand: Reverse

Name: yeaT [C]

Synonym: AM1_0632

Alternate gene names: 158333823

Gene position: 619627-618707 (Counterclockwise)

Preceding gene: 158333827

Following gene: 158333822

Centisome position: 9.53

GC content: 45.71

Gene sequence:

>921_bases
ATGGATAAATTCGACAGTATGTATGCCTTCACCCAAGTGGTTGATGCAGGGGGATTTGCAGCAGCCTCCCGGAAAATGGG
ACTGTCGCGATCGCAAGTCAATAAATTGGTGATTAACCTAGAGGACAGCTTAGGGGTGCAACTTTTACAACGCACGACGC
GCAAAGTAGTCCCCACAAAAACCGGTCTAGCTTTTTATGAGCGTTGTCAAGCCATTCTGGCAGACGTGGCAGAAGCAGAA
GAATCCATTACCCAATACCAAACCCAGCCCAAAGGAATCCTGCGAATCAACGCCCCCATGTCTTTTGGCACAGAATACTT
AGCTCCGCTCCTGCCTGATTTCTTAACTCAGCATTCAGAATTAAAGGTGGAATTGGTTTTAAATGATCGATTTATTGATC
CGATCGAAGAGGGGTTCGATATTAGTATTCGTATTTCTGCACAACCGATAGCTAGTAGCTTAATCGTTCACACCCTTTGT
CCTGCCCCCAGAGTGCTATGTGCTGCCCCTGATTATCTTGAGCAACATGGTATTCCTAGGCATCCTGATCAACTCAAGCA
CCATTCTTGCTTGCACTATGGCTACTCGGAGCCACTCCATCATTGGCAACTCAAAGGGCCTGATCAAATCCATCGGATTC
AAGTCCAAGGTGCTATCTGTTCAAATAATGGAGAAGTGCTACGACAGGCAACTCTCAAGGGATTAGGGATTGCGCTGTTA
CCGATTTTTCTTGTAGGAGAAGATTTGAAAGGTGAGCGATTGCAGGTGGTTTTATCAAATTATGACAGTCCTGGAATCGC
AGTTCATATCCTTTATCCCGTGAGTAAACATCTTTCTGCCAAGGTGCAGTTGTTTACAGCGTTCTTACAAACACACCTTG
GCCAAGATCCACAACTGGCCGAAGAGACAGACAAGAATTAA

Upstream 100 bases:

>100_bases
ACTTCTTTCAGTTCGGTGATATATCTATCATCAACTAACTCTTTATAAATGACAATATGATATTTTAGTGACATATTGTC
TCTTTATTTACGACAATAAG

Downstream 100 bases:

>100_bases
GATGGGAGAACGAACCTGTCTCAAAATCGCTGAAATACCGTTTTTTGATCTGACTTCGTTTTTAATCAGCCCCTTAACAG
AAGTCCTAATTCTCACCCCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MDKFDSMYAFTQVVDAGGFAAASRKMGLSRSQVNKLVINLEDSLGVQLLQRTTRKVVPTKTGLAFYERCQAILADVAEAE
ESITQYQTQPKGILRINAPMSFGTEYLAPLLPDFLTQHSELKVELVLNDRFIDPIEEGFDISIRISAQPIASSLIVHTLC
PAPRVLCAAPDYLEQHGIPRHPDQLKHHSCLHYGYSEPLHHWQLKGPDQIHRIQVQGAICSNNGEVLRQATLKGLGIALL
PIFLVGEDLKGERLQVVLSNYDSPGIAVHILYPVSKHLSAKVQLFTAFLQTHLGQDPQLAEETDKN

Sequences:

>Translated_306_residues
MDKFDSMYAFTQVVDAGGFAAASRKMGLSRSQVNKLVINLEDSLGVQLLQRTTRKVVPTKTGLAFYERCQAILADVAEAE
ESITQYQTQPKGILRINAPMSFGTEYLAPLLPDFLTQHSELKVELVLNDRFIDPIEEGFDISIRISAQPIASSLIVHTLC
PAPRVLCAAPDYLEQHGIPRHPDQLKHHSCLHYGYSEPLHHWQLKGPDQIHRIQVQGAICSNNGEVLRQATLKGLGIALL
PIFLVGEDLKGERLQVVLSNYDSPGIAVHILYPVSKHLSAKVQLFTAFLQTHLGQDPQLAEETDKN
>Mature_306_residues
MDKFDSMYAFTQVVDAGGFAAASRKMGLSRSQVNKLVINLEDSLGVQLLQRTTRKVVPTKTGLAFYERCQAILADVAEAE
ESITQYQTQPKGILRINAPMSFGTEYLAPLLPDFLTQHSELKVELVLNDRFIDPIEEGFDISIRISAQPIASSLIVHTLC
PAPRVLCAAPDYLEQHGIPRHPDQLKHHSCLHYGYSEPLHHWQLKGPDQIHRIQVQGAICSNNGEVLRQATLKGLGIALL
PIFLVGEDLKGERLQVVLSNYDSPGIAVHILYPVSKHLSAKVQLFTAFLQTHLGQDPQLAEETDKN

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081978, Length=293, Percent_Identity=34.8122866894198, Blast_Score=164, Evalue=5e-42,
Organism=Escherichia coli, GI1786401, Length=292, Percent_Identity=33.2191780821918, Blast_Score=162, Evalue=2e-41,
Organism=Escherichia coli, GI145693193, Length=291, Percent_Identity=32.9896907216495, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI1789639, Length=303, Percent_Identity=33.003300330033, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI1789440, Length=290, Percent_Identity=31.3793103448276, Blast_Score=146, Evalue=1e-36,
Organism=Escherichia coli, GI1787128, Length=294, Percent_Identity=29.9319727891156, Blast_Score=138, Evalue=4e-34,
Organism=Escherichia coli, GI1787589, Length=293, Percent_Identity=26.6211604095563, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1790011, Length=257, Percent_Identity=23.3463035019455, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1787601, Length=135, Percent_Identity=28.8888888888889, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1789173, Length=290, Percent_Identity=23.7931034482759, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33975; Mature: 33975

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKFDSMYAFTQVVDAGGFAAASRKMGLSRSQVNKLVINLEDSLGVQLLQRTTRKVVPTK
CCCHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHCEEEEEECHHHHHHHHHHHHHHCCCCC
TGLAFYERCQAILADVAEAEESITQYQTQPKGILRINAPMSFGTEYLAPLLPDFLTQHSE
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCHHHHHHHHHHHHCCCCC
LKVELVLNDRFIDPIEEGFDISIRISAQPIASSLIVHTLCPAPRVLCAAPDYLEQHGIPR
EEEEEEECCCCCCHHHCCCEEEEEEECCHHHHHHHHHHHCCCCCEEECCCHHHHHCCCCC
HPDQLKHHSCLHYGYSEPLHHWQLKGPDQIHRIQVQGAICSNNGEVLRQATLKGLGIALL
CHHHHHHHHHHHCCCCCCCCCEECCCCCCEEEEEEEEEEECCCCHHHHHHHHHHCHHHHH
PIFLVGEDLKGERLQVVLSNYDSPGIAVHILYPVSKHLSAKVQLFTAFLQTHLGQDPQLA
HHHHCCCCCCCCEEEEEEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCHH
EETDKN
HHCCCC
>Mature Secondary Structure
MDKFDSMYAFTQVVDAGGFAAASRKMGLSRSQVNKLVINLEDSLGVQLLQRTTRKVVPTK
CCCHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHCEEEEEECHHHHHHHHHHHHHHCCCCC
TGLAFYERCQAILADVAEAEESITQYQTQPKGILRINAPMSFGTEYLAPLLPDFLTQHSE
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCHHHHHHHHHHHHCCCCC
LKVELVLNDRFIDPIEEGFDISIRISAQPIASSLIVHTLCPAPRVLCAAPDYLEQHGIPR
EEEEEEECCCCCCHHHCCCEEEEEEECCHHHHHHHHHHHCCCCCEEECCCHHHHHCCCCC
HPDQLKHHSCLHYGYSEPLHHWQLKGPDQIHRIQVQGAICSNNGEVLRQATLKGLGIALL
CHHHHHHHHHHHCCCCCCCCCEECCCCCCEEEEEEEEEEECCCCHHHHHHHHHHCHHHHH
PIFLVGEDLKGERLQVVLSNYDSPGIAVHILYPVSKHLSAKVQLFTAFLQTHLGQDPQLA
HHHHCCCCCCCCEEEEEEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCHH
EETDKN
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]