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The map label for this gene is yebA [H]

Identifier: 158333815

GI number: 158333815

Start: 612042

End: 613310

Strand: Reverse

Name: yebA [H]

Synonym: AM1_0624

Alternate gene names: 158333815

Gene position: 613310-612042 (Counterclockwise)

Preceding gene: 158333816

Following gene: 158333813

Centisome position: 9.43

GC content: 54.14

Gene sequence:

>1269_bases
ATGATGCATCGCTCTCACTCAATCTCTATCCGAACTCACCTTCGGTCAACCTCTCTGTTGTGCCTGGGCAGCTGGCTAAG
TCTTCCCCTTGGCTTGGGAGTTCTGTCTCTGAATCAGCGAGCCCAAGCGATTGATCTTGAGAGTCCGACCATCACAGAAT
CTGCCCCCATCACGCCGGCAGCCCCTCCCGTCGACACGTTTATCGATCCCCCCGAACCTGCTTGGGAACCTGCACCTGTC
GCACCTCCTATCCCTGAGCCCATTGCCTTACCTGAAGCCCCTATGCCGGCTGCTCCAGCAGCTCCAATAGCACCAGCCAT
ATCGCCACAAGTCATGCCGCAGGTGGCTGACCGCCCAACCATCGCCCCCAGCAACAAGAGCAACGCCTCCATAACCTATG
GCGCAGTCGATGAACCGGTAGAAACCGTATCTGCCCCAAACTCAAATCGAACCGTTCTATCGGGTAGCGTTTCTGGCTGT
AAAGCGAGTCTCAATATTGATCCAGTCCTTGCGGCAACCCTTTGTGGCCCTGCGGTCCAAACCGCCCAGCGACCTAACAT
TCCAACTCGTCAGTATACGCCTGTTGCTTCTGCTCCAACCTATTCGACCTATTCTTATCAACCCCCACAACAACCTGCCT
CCCAGGAGACAGCCTACTCTCCGTCCTATATCCCTAAAACGGCTCCAACTCCGTGGGTTACAGGTGCTCCAGCCACTTTG
AGCCCCTTAGCAAAAGCCTCTCCTTCGATCAAACGGCTGTCTTCCTCACCTAACCCTTTAAAGTGGCTCGTTCCAAATCG
GCAGCGAATGATCTTTCCGTTACCGATGCCCGCTTCTATCACTTCAGCGTTTGGTTGGCGGACTCACCCCATTTCAGGGA
AAACCAGTTTCCATGCTGGCACGGATTTGGCAGCACCAACCGGCACACCTGTTTTAGCAACGTTTCCTGGCCAGGTCCAA
ACCGCAGGCTTTATGGGTGGCTATGGCTTAGCAATTCTTCTGCACCACCAAGATGGGCAACTGGCAACCCGGTATGCCCA
CCTATCCAAGGTTTATGTCCAACCGGGGCAATGGGTTTCCCAAGGAACTATCATCGGATTGGTGGGGAGTACTGGCAATT
CCACTGGCCCTCACCTCCACTTCGAGACGTTAAAGCGTCAAAATAAGCGCATGGTCGCTTTTGATTCAGGAATTCAGCTC
AAAGTCTCCCTGGCAGAGTTAATTAAAGCCATGCAGACCGCAAAAGTCCCTCCCAAACCCCAGGGCTAA

Upstream 100 bases:

>100_bases
GTCTTGAAGGTTAAATTAACCTTGTCTCTCTTTGCTTTACTGATGTGTTTTCCATTGATCACCGACAAAAAACTGAATCA
CCTCTAAGGATCGAATTGGT

Downstream 100 bases:

>100_bases
GTTAGGCACAGCAGATTGAAGTTCAATCGCCTAAATTAACTCAAGCCTAGATGTCCTTCTCGCTGATTGATAAGGCACCC
TTAGCGATTGAATATTGGAG

Product: peptidase M23 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 422

Protein sequence:

>422_residues
MMHRSHSISIRTHLRSTSLLCLGSWLSLPLGLGVLSLNQRAQAIDLESPTITESAPITPAAPPVDTFIDPPEPAWEPAPV
APPIPEPIALPEAPMPAAPAAPIAPAISPQVMPQVADRPTIAPSNKSNASITYGAVDEPVETVSAPNSNRTVLSGSVSGC
KASLNIDPVLAATLCGPAVQTAQRPNIPTRQYTPVASAPTYSTYSYQPPQQPASQETAYSPSYIPKTAPTPWVTGAPATL
SPLAKASPSIKRLSSSPNPLKWLVPNRQRMIFPLPMPASITSAFGWRTHPISGKTSFHAGTDLAAPTGTPVLATFPGQVQ
TAGFMGGYGLAILLHHQDGQLATRYAHLSKVYVQPGQWVSQGTIIGLVGSTGNSTGPHLHFETLKRQNKRMVAFDSGIQL
KVSLAELIKAMQTAKVPPKPQG

Sequences:

>Translated_422_residues
MMHRSHSISIRTHLRSTSLLCLGSWLSLPLGLGVLSLNQRAQAIDLESPTITESAPITPAAPPVDTFIDPPEPAWEPAPV
APPIPEPIALPEAPMPAAPAAPIAPAISPQVMPQVADRPTIAPSNKSNASITYGAVDEPVETVSAPNSNRTVLSGSVSGC
KASLNIDPVLAATLCGPAVQTAQRPNIPTRQYTPVASAPTYSTYSYQPPQQPASQETAYSPSYIPKTAPTPWVTGAPATL
SPLAKASPSIKRLSSSPNPLKWLVPNRQRMIFPLPMPASITSAFGWRTHPISGKTSFHAGTDLAAPTGTPVLATFPGQVQ
TAGFMGGYGLAILLHHQDGQLATRYAHLSKVYVQPGQWVSQGTIIGLVGSTGNSTGPHLHFETLKRQNKRMVAFDSGIQL
KVSLAELIKAMQTAKVPPKPQG
>Mature_422_residues
MMHRSHSISIRTHLRSTSLLCLGSWLSLPLGLGVLSLNQRAQAIDLESPTITESAPITPAAPPVDTFIDPPEPAWEPAPV
APPIPEPIALPEAPMPAAPAAPIAPAISPQVMPQVADRPTIAPSNKSNASITYGAVDEPVETVSAPNSNRTVLSGSVSGC
KASLNIDPVLAATLCGPAVQTAQRPNIPTRQYTPVASAPTYSTYSYQPPQQPASQETAYSPSYIPKTAPTPWVTGAPATL
SPLAKASPSIKRLSSSPNPLKWLVPNRQRMIFPLPMPASITSAFGWRTHPISGKTSFHAGTDLAAPTGTPVLATFPGQVQ
TAGFMGGYGLAILLHHQDGQLATRYAHLSKVYVQPGQWVSQGTIIGLVGSTGNSTGPHLHFETLKRQNKRMVAFDSGIQL
KVSLAELIKAMQTAKVPPKPQG

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=112, Percent_Identity=44.6428571428571, Blast_Score=94, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 44452; Mature: 44452

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMHRSHSISIRTHLRSTSLLCLGSWLSLPLGLGVLSLNQRAQAIDLESPTITESAPITPA
CCCCCCEEEEEEECCCCCEEEHHHHHHHHHCCCEEECCCCCEEEECCCCCCCCCCCCCCC
APPVDTFIDPPEPAWEPAPVAPPIPEPIALPEAPMPAAPAAPIAPAISPQVMPQVADRPT
CCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC
IAPSNKSNASITYGAVDEPVETVSAPNSNRTVLSGSVSGCKASLNIDPVLAATLCGPAVQ
CCCCCCCCCEEEECCCCCCHHHHCCCCCCCEEEECCCCCCEEECCCCHHHHHHHHCHHHH
TAQRPNIPTRQYTPVASAPTYSTYSYQPPQQPASQETAYSPSYIPKTAPTPWVTGAPATL
HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
SPLAKASPSIKRLSSSPNPLKWLVPNRQRMIFPLPMPASITSAFGWRTHPISGKTSFHAG
HHHHHCCCHHHHHCCCCCCEEEECCCCCEEEEECCCCHHHHHHCCCEECCCCCCCCCCCC
TDLAAPTGTPVLATFPGQVQTAGFMGGYGLAILLHHQDGQLATRYAHLSKVYVQPGQWVS
CCCCCCCCCCEEEECCCCEEECCEECCCEEEEEEECCCCCHHHHHHHHHEEEECCCCEEC
QGTIIGLVGSTGNSTGPHLHFETLKRQNKRMVAFDSGIQLKVSLAELIKAMQTAKVPPKP
CCEEEEEEECCCCCCCCEEEHHHHHHCCCEEEEECCCCEEEEEHHHHHHHHHHCCCCCCC
QG
CC
>Mature Secondary Structure
MMHRSHSISIRTHLRSTSLLCLGSWLSLPLGLGVLSLNQRAQAIDLESPTITESAPITPA
CCCCCCEEEEEEECCCCCEEEHHHHHHHHHCCCEEECCCCCEEEECCCCCCCCCCCCCCC
APPVDTFIDPPEPAWEPAPVAPPIPEPIALPEAPMPAAPAAPIAPAISPQVMPQVADRPT
CCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC
IAPSNKSNASITYGAVDEPVETVSAPNSNRTVLSGSVSGCKASLNIDPVLAATLCGPAVQ
CCCCCCCCCEEEECCCCCCHHHHCCCCCCCEEEECCCCCCEEECCCCHHHHHHHHCHHHH
TAQRPNIPTRQYTPVASAPTYSTYSYQPPQQPASQETAYSPSYIPKTAPTPWVTGAPATL
HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
SPLAKASPSIKRLSSSPNPLKWLVPNRQRMIFPLPMPASITSAFGWRTHPISGKTSFHAG
HHHHHCCCHHHHHCCCCCCEEEECCCCCEEEEECCCCHHHHHHCCCEECCCCCCCCCCCC
TDLAAPTGTPVLATFPGQVQTAGFMGGYGLAILLHHQDGQLATRYAHLSKVYVQPGQWVS
CCCCCCCCCCEEEECCCCEEECCEECCCEEEEEEECCCCCHHHHHHHHHEEEECCCCEEC
QGTIIGLVGSTGNSTGPHLHFETLKRQNKRMVAFDSGIQLKVSLAELIKAMQTAKVPPKP
CCEEEEEEECCCCCCCCEEEHHHHHHCCCEEEEECCCCEEEEEHHHHHHHHHHCCCCCCC
QG
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]