| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158319036
Identifier: 158319036
GI number: 158319036
Start: 8946847
End: 8948673
Strand: Reverse
Name: 158319036
Synonym: Franean1_7319
Alternate gene names: NA
Gene position: 8948673-8946847 (Counterclockwise)
Preceding gene: 158319038
Following gene: 158319033
Centisome position: 99.63
GC content: 73.4
Gene sequence:
>1827_bases ATGCCTGGTGCCCGCCACCGCCACCGCCGTTCGGGCCCCTCGTTACGGGGGGTCGCGGCGGTGGCTGCGGTACCCCTCAT GGTCGGCGCCCTGACCTGCGGATGGCTCGTCCTGCGCGGAGGGGCCGGCCCCGTTCGCTGCGATCGCACGATCACCCTCG GGGTCACCACCTCGCCGAGCCTGGCCACGGCGTTGAGCGAGGCCGCCGCGGCCTACGGCAGCGGGAAGCCGACGGTGTCC GGGTACTGCGTGTCCGTCCGGGTCGACACGGCGGGCGGCGGCCAGGTCGCCTCCTACATGAGAGGCGGCTGGACGGACCC GACGGCCGGTCCGATCCCGGACGTCTGGGTGCCGGACTCCACGGACTGGCTCACGCTGGCGCGGACCACCGAGCCGGCCA ACCGGCTGCTGGTGGACACCGGCACCGTTATCGCCACCTCACCGGTCGTCATCGCGATGCCCCGCCCGATGGCCGAGGTG TTCGGCTGGCCGCGTCGCGAGCTCTCCTGGGCCGACCTGCGCAAGCTCGGTGGCGACGAGGGCTACTGGGGGTCACGGGG ACGGCCGGCCTGGGGCGGTTTCACCGTCGGGCTGCCCGACCCCCGGGTGTCGGCTGCCGGGATGACCGCGCTGGCCGACG CCGTGGCCGCCGCGCTGAAGACCCCGGTCGAACGGCTCACCGAGGACATGTTCACCGACGGCCTCGCGGCCAAGGGTGCC CTCCTGGATCTGGAGCGCTCGTCGGCGCTGGTAGCCGCCTCCGACACCGACCTGCTCACGGCCGTCCGCGCGGCGGACCT CGAGGACCCCGCGGCGACCAGGCTCACCGCGTTCCCGCTTCAGGAGAGTCTCGTCTACCAGTACAACCGCCGGGTGGGCA TCGGCGCCGCGCTGCCGGACGGCCGCGGACCGGAGCTGGCCGCCTTCTACCCGCGGGACGGCACCGAGCTCGACGAGATC CGGTACACCGTGCTGAGCCGGGCGTCGGACGACCCGGTGAAGGCCGAGGTGGCGCGGGACTTCCTGCGGACGCTGACGTC CGGGCCGGGGCGGGTCGCCCTGCTCGGGAACGGCCTGCGCCCCCCGGACGGCATCGCCGACTCGTTCACAGCCCGGACGG GGCTCACCCCGCGGCCGCGGATGACGCCCGAACGCACCCTGGACGCGACGGTGCTGACCGCGCTCCAGGGGAGCTTCGCA GGCGTCCATCAGCGCGGGAACACCCTCGCCGTGCTGGACACCTCGGGCTCCATGAACGAGGAGGTGCCGGGCAGCGCGGG CCGCAGCCGGCTGTCGGTGGCGCTCGACGCGGCGAAGTCCGCCATCCCGCTGTTCGCCGAAGACAGCGATCTCGGGCTGT GGCAGTTCTCCACCCGGCTGCGCGGCGACCAGGACTGGGAGGAGCTCGTGCCGCTCGGGCCGATGGGCGAGCGGCTGGGC GCCGGCACGCGCTCGCAGGCGGTGATGGACGCGGTGAACCGGATCGAGCCGCGCGGCGACACCGGGCTCTACGACACGGC CCTCGCCGCGTTCCGCTACATGAACCAGCACTATGTGCCGGGCCGGCCCAACCAGGTCGTGCTGCTGACCGACGGGAAGA ACTCCGATCCCGGCAGCATCGCGCTCGACGAGCTGGTGCGGATCCTGCGCCGGGAGTACTCGCCCCAGCGGCCCGTCCAG GTGATCACGATCGGCTATGGCGCCGACACGGATCTCGCCGCGCTGTCGCGGATCTCGGCCGCGACCGGAGCCGAGACGTA TCCCGCGCTGGACCCGAACACCATCTTCGAGGTCCTCGTCGACGCGCTGACCGAGGTTCCCGGCTGA
Upstream 100 bases:
>100_bases ATCAATGCAGGGACTTCGGATGTCCCATCTGGCGCAGACCTCGGCACGTTTGGTTACGGTCGCGGTCCAGACTTCGGTTG TTCCGGGAGGTCCCGGTCTG
Downstream 100 bases:
>100_bases CCCGCGCATGCCTGTAGCCCGGTCGTCCCCCTCCGGACGACCGGGCTACCTGGCGGATCGTGGGTGGTGCTGGTGGTGCG GAGGTCAGCCCTCGTCGCGG
Product: von Willebrand factor type A
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 608; Mature: 607
Protein sequence:
>608_residues MPGARHRHRRSGPSLRGVAAVAAVPLMVGALTCGWLVLRGGAGPVRCDRTITLGVTTSPSLATALSEAAAAYGSGKPTVS GYCVSVRVDTAGGGQVASYMRGGWTDPTAGPIPDVWVPDSTDWLTLARTTEPANRLLVDTGTVIATSPVVIAMPRPMAEV FGWPRRELSWADLRKLGGDEGYWGSRGRPAWGGFTVGLPDPRVSAAGMTALADAVAAALKTPVERLTEDMFTDGLAAKGA LLDLERSSALVAASDTDLLTAVRAADLEDPAATRLTAFPLQESLVYQYNRRVGIGAALPDGRGPELAAFYPRDGTELDEI RYTVLSRASDDPVKAEVARDFLRTLTSGPGRVALLGNGLRPPDGIADSFTARTGLTPRPRMTPERTLDATVLTALQGSFA GVHQRGNTLAVLDTSGSMNEEVPGSAGRSRLSVALDAAKSAIPLFAEDSDLGLWQFSTRLRGDQDWEELVPLGPMGERLG AGTRSQAVMDAVNRIEPRGDTGLYDTALAAFRYMNQHYVPGRPNQVVLLTDGKNSDPGSIALDELVRILRREYSPQRPVQ VITIGYGADTDLAALSRISAATGAETYPALDPNTIFEVLVDALTEVPG
Sequences:
>Translated_608_residues MPGARHRHRRSGPSLRGVAAVAAVPLMVGALTCGWLVLRGGAGPVRCDRTITLGVTTSPSLATALSEAAAAYGSGKPTVS GYCVSVRVDTAGGGQVASYMRGGWTDPTAGPIPDVWVPDSTDWLTLARTTEPANRLLVDTGTVIATSPVVIAMPRPMAEV FGWPRRELSWADLRKLGGDEGYWGSRGRPAWGGFTVGLPDPRVSAAGMTALADAVAAALKTPVERLTEDMFTDGLAAKGA LLDLERSSALVAASDTDLLTAVRAADLEDPAATRLTAFPLQESLVYQYNRRVGIGAALPDGRGPELAAFYPRDGTELDEI RYTVLSRASDDPVKAEVARDFLRTLTSGPGRVALLGNGLRPPDGIADSFTARTGLTPRPRMTPERTLDATVLTALQGSFA GVHQRGNTLAVLDTSGSMNEEVPGSAGRSRLSVALDAAKSAIPLFAEDSDLGLWQFSTRLRGDQDWEELVPLGPMGERLG AGTRSQAVMDAVNRIEPRGDTGLYDTALAAFRYMNQHYVPGRPNQVVLLTDGKNSDPGSIALDELVRILRREYSPQRPVQ VITIGYGADTDLAALSRISAATGAETYPALDPNTIFEVLVDALTEVPG >Mature_607_residues PGARHRHRRSGPSLRGVAAVAAVPLMVGALTCGWLVLRGGAGPVRCDRTITLGVTTSPSLATALSEAAAAYGSGKPTVSG YCVSVRVDTAGGGQVASYMRGGWTDPTAGPIPDVWVPDSTDWLTLARTTEPANRLLVDTGTVIATSPVVIAMPRPMAEVF GWPRRELSWADLRKLGGDEGYWGSRGRPAWGGFTVGLPDPRVSAAGMTALADAVAAALKTPVERLTEDMFTDGLAAKGAL LDLERSSALVAASDTDLLTAVRAADLEDPAATRLTAFPLQESLVYQYNRRVGIGAALPDGRGPELAAFYPRDGTELDEIR YTVLSRASDDPVKAEVARDFLRTLTSGPGRVALLGNGLRPPDGIADSFTARTGLTPRPRMTPERTLDATVLTALQGSFAG VHQRGNTLAVLDTSGSMNEEVPGSAGRSRLSVALDAAKSAIPLFAEDSDLGLWQFSTRLRGDQDWEELVPLGPMGERLGA GTRSQAVMDAVNRIEPRGDTGLYDTALAAFRYMNQHYVPGRPNQVVLLTDGKNSDPGSIALDELVRILRREYSPQRPVQV ITIGYGADTDLAALSRISAATGAETYPALDPNTIFEVLVDALTEVPG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002035 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 64265; Mature: 64134
Theoretical pI: Translated: 5.01; Mature: 5.01
Prosite motif: PS50234 VWFA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPGARHRHRRSGPSLRGVAAVAAVPLMVGALTCGWLVLRGGAGPVRCDRTITLGVTTSPS CCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEECCEEEEEECCCCH LATALSEAAAAYGSGKPTVSGYCVSVRVDTAGGGQVASYMRGGWTDPTAGPIPDVWVPDS HHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC TDWLTLARTTEPANRLLVDTGTVIATSPVVIAMPRPMAEVFGWPRRELSWADLRKLGGDE CCEEEEEECCCCCCEEEEECCCEEEECCEEEECCCCHHHHCCCCCCCCCHHHHHHCCCCC GYWGSRGRPAWGGFTVGLPDPRVSAAGMTALADAVAAALKTPVERLTEDMFTDGLAAKGA CCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCC LLDLERSSALVAASDTDLLTAVRAADLEDPAATRLTAFPLQESLVYQYNRRVGIGAALPD EEEECCCCEEEEECCCHHHHHHHHCCCCCCHHHCEEECCHHHHHHHHHCCCEEEEEECCC GRGPELAAFYPRDGTELDEIRYTVLSRASDDPVKAEVARDFLRTLTSGPGRVALLGNGLR CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCC PPDGIADSFTARTGLTPRPRMTPERTLDATVLTALQGSFAGVHQRGNTLAVLDTSGSMNE CCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHCCCCEEEEEECCCCCCC EVPGSAGRSRLSVALDAAKSAIPLFAEDSDLGLWQFSTRLRGDQDWEELVPLGPMGERLG CCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCEEEHHHHCCCCCCHHHHCCCCCCHHHHC AGTRSQAVMDAVNRIEPRGDTGLYDTALAAFRYMNQHYVPGRPNQVVLLTDGKNSDPGSI CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCH ALDELVRILRREYSPQRPVQVITIGYGADTDLAALSRISAATGAETYPALDPNTIFEVLV HHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH DALTEVPG HHHHHCCC >Mature Secondary Structure PGARHRHRRSGPSLRGVAAVAAVPLMVGALTCGWLVLRGGAGPVRCDRTITLGVTTSPS CCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEECCEEEEEECCCCH LATALSEAAAAYGSGKPTVSGYCVSVRVDTAGGGQVASYMRGGWTDPTAGPIPDVWVPDS HHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC TDWLTLARTTEPANRLLVDTGTVIATSPVVIAMPRPMAEVFGWPRRELSWADLRKLGGDE CCEEEEEECCCCCCEEEEECCCEEEECCEEEECCCCHHHHCCCCCCCCCHHHHHHCCCCC GYWGSRGRPAWGGFTVGLPDPRVSAAGMTALADAVAAALKTPVERLTEDMFTDGLAAKGA CCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCC LLDLERSSALVAASDTDLLTAVRAADLEDPAATRLTAFPLQESLVYQYNRRVGIGAALPD EEEECCCCEEEEECCCHHHHHHHHCCCCCCHHHCEEECCHHHHHHHHHCCCEEEEEECCC GRGPELAAFYPRDGTELDEIRYTVLSRASDDPVKAEVARDFLRTLTSGPGRVALLGNGLR CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCC PPDGIADSFTARTGLTPRPRMTPERTLDATVLTALQGSFAGVHQRGNTLAVLDTSGSMNE CCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHCCCCEEEEEECCCCCCC EVPGSAGRSRLSVALDAAKSAIPLFAEDSDLGLWQFSTRLRGDQDWEELVPLGPMGERLG CCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCEEEHHHHCCCCCCHHHHCCCCCCHHHHC AGTRSQAVMDAVNRIEPRGDTGLYDTALAAFRYMNQHYVPGRPNQVVLLTDGKNSDPGSI CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCH ALDELVRILRREYSPQRPVQVITIGYGADTDLAALSRISAATGAETYPALDPNTIFEVLV HHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH DALTEVPG HHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]