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The map label for this gene is ycnJ [H]

Identifier: 158318958

GI number: 158318958

Start: 8842673

End: 8844622

Strand: Reverse

Name: ycnJ [H]

Synonym: Franean1_7241

Alternate gene names: 158318958

Gene position: 8844622-8842673 (Counterclockwise)

Preceding gene: 158318959

Following gene: 158318954

Centisome position: 98.47

GC content: 74.1

Gene sequence:

>1950_bases
TTGCCGACACCGGCCGGCCGGGGTGGCACCCCCGCCTGGGCGGAACATCACCCGGAACGGAACATCATGACCGGATCCGA
ACGAAGGGGCTTGGAGCGTGGCGCCGGCCGCCGGCGCGCCGGCGAGCCCTCCCGCCGCCACGTCGGCGCCCGCAGGGTGC
TGGCGGTCTGCGCGCTCGCCGCCGTCGCCGTGCTGGGCATGGCGCTGCCCGCGTCGGCGCACGCGGTGCTCACCGGTAGC
GACCCGGTGGGCGGAGCGGCCCTCGACACCGCTCCCGCCCAGGTGACCCTGACGTTCAGCGAGTCCGTCTCGGTCAAGTC
CGATTCGATCCGGATCCTGGACACCGCCGGCGCCCGCGCCGACGAAGGCGGTGCGCACGCCGGTGCGGCGGCGTCGCAGG
CGACCGTCGCCCTGCGCGCCGGGCTCGGCCGGGGCACGTACGTGGTGAGCTGGCGAGTCGTCTCCGCGGACAGCCACCCG
GTCGGCGGCGCGTTCGCGTTCGGGGTCGGAGGCCCGCCCGACGCCGGCGCGGCGGCTGCCCTGCCCTCGGGCGGCGGCGG
GTCCCGGGTGGTCGGGGTGGCCCTGGGCACGGCGAGGTTCATCGCGTTCGCCGGGGCTGCGCTGCTGATCGGCGCCACCT
TCTTCGTGGCCGTCCTGTGGCCCGCCGGGGCGCGCCGCTCCGCCCCGGTCCGGCTGATCGCAGCCGGCTGGCTGCTCAGC
CTCGTCGGCGCGGTCGGGATGCTCCTCTTCCAAGGGCCCTACACGGCCGGGTCCGGAATCTCCGGCATTTTCCGCGGTGA
CCCGCTGGCCACCACCCTGGACGGCCGTTACGGCCAGCTCCTGGCGATCCGCGTGCTGGCGCTGCTGCTGGCCGTGCCGC
TGCTGCGCCGGCTGCGCGACCCGGAGATGACCGAACCGGGCGACGACGGCGTTCGCCACCCATCCGGGGCCGGCCGCCGG
GGACTGGTGGAGCTCGCCGGTCTCGGCCTGGCGCTTGTGGTGACCATGGCGATGATCGGCCACGCGAGCGCGGGGGAGAC
AGTCTGGCTGGCGACGGCCAGCGTGACCCTGCACACCGCGGCCATGGCGATCTGGCTGGGCGGGCTGTGCGTGCTCGGCC
TGACCCTGCTCGGCTGGTCCGGGCAGGGCGCAGGCGACGGCCACGGCAGCAGCGACGGCACCGGCACCGGCAATGACACT
GGCGATGACGGCATGGGCCGGGACGCGAGCCTCGAAGGCGAGCCCGTGCCGCCCGCCCACGCGGTCGAACTGGCCCATGT
CCTGCCACGCTGGTCGAGGACGGCGATGATCGCGATCGCCGTGATCGTCCTGACCGGGGCCTTCCAGACCTGGCGGGAGA
TCGGCGAGTTCGGGGCGCTGTTCGACACGACCTACGGCCGGTTGCTCCTCTACAAGCTCTGGTTCGTCCTCGGCGCGCTC
GGGCTGGGGTTCCTCGCCAGGCGCTGGGTGCTCCGGCACTACCACCCCGAGCCGGGGCCGCAGGTCACCTCGATCGCCCT
CACCGGGCTGCGCCGTGGCGTGCTGTTCGAGGTCCTGATCGGTGCCGTGGTCCTGGCGGTCACCGCGATCCTGGTGAACA
CCATCCCGGGCCGGGACTCCTACGCCCCGCCCTTCGCCAGGACCACCGTCGCCGGCCCGCTCACCGTGGACATCAACGTC
TCGCCCACCCGCACCGGCGCGCAGACGATGCACATCTACACCTACGACCCGCAAGGCCGGCCGCAGCGGCTGGTCGAGGC
CAGCGGGGAGCTGAGCCTGCCCTCGGCGGGTGTCGGCCCCCTACAGGTCCCGCTGGTCGAGGTCGCTGACGGCCACGCCG
TAGCCGAGGGAGTGGGCGTGCCCCTGCCCGGCCAGTGGCAGCTTCGCTTCACCCTGCGCGTCAACGACTTCGACCAGTAC
GTGACGACGGTCTTCTACGACGTCCGCTGA

Upstream 100 bases:

>100_bases
TCCTCGGGCTGGCCGCCGGGGCCTTCGCACTGATCACGACCCGCCGGCGGGCCTGACCCCGCGGGGTGCCTCCCACCAGC
CGGTGGGAGGCACCCCGCAC

Downstream 100 bases:

>100_bases
ACTCCGCCCGCTCTGTTGCCTCGGCCGCGTATGGACTGGCTGAGGCAACGCGCTTCGGTTGAGCTACTTCCGACTCGGCA
TTAGACCGGGAACGGGCTCT

Product: copper resistance protein CopC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 649; Mature: 648

Protein sequence:

>649_residues
MPTPAGRGGTPAWAEHHPERNIMTGSERRGLERGAGRRRAGEPSRRHVGARRVLAVCALAAVAVLGMALPASAHAVLTGS
DPVGGAALDTAPAQVTLTFSESVSVKSDSIRILDTAGARADEGGAHAGAAASQATVALRAGLGRGTYVVSWRVVSADSHP
VGGAFAFGVGGPPDAGAAAALPSGGGGSRVVGVALGTARFIAFAGAALLIGATFFVAVLWPAGARRSAPVRLIAAGWLLS
LVGAVGMLLFQGPYTAGSGISGIFRGDPLATTLDGRYGQLLAIRVLALLLAVPLLRRLRDPEMTEPGDDGVRHPSGAGRR
GLVELAGLGLALVVTMAMIGHASAGETVWLATASVTLHTAAMAIWLGGLCVLGLTLLGWSGQGAGDGHGSSDGTGTGNDT
GDDGMGRDASLEGEPVPPAHAVELAHVLPRWSRTAMIAIAVIVLTGAFQTWREIGEFGALFDTTYGRLLLYKLWFVLGAL
GLGFLARRWVLRHYHPEPGPQVTSIALTGLRRGVLFEVLIGAVVLAVTAILVNTIPGRDSYAPPFARTTVAGPLTVDINV
SPTRTGAQTMHIYTYDPQGRPQRLVEASGELSLPSAGVGPLQVPLVEVADGHAVAEGVGVPLPGQWQLRFTLRVNDFDQY
VTTVFYDVR

Sequences:

>Translated_649_residues
MPTPAGRGGTPAWAEHHPERNIMTGSERRGLERGAGRRRAGEPSRRHVGARRVLAVCALAAVAVLGMALPASAHAVLTGS
DPVGGAALDTAPAQVTLTFSESVSVKSDSIRILDTAGARADEGGAHAGAAASQATVALRAGLGRGTYVVSWRVVSADSHP
VGGAFAFGVGGPPDAGAAAALPSGGGGSRVVGVALGTARFIAFAGAALLIGATFFVAVLWPAGARRSAPVRLIAAGWLLS
LVGAVGMLLFQGPYTAGSGISGIFRGDPLATTLDGRYGQLLAIRVLALLLAVPLLRRLRDPEMTEPGDDGVRHPSGAGRR
GLVELAGLGLALVVTMAMIGHASAGETVWLATASVTLHTAAMAIWLGGLCVLGLTLLGWSGQGAGDGHGSSDGTGTGNDT
GDDGMGRDASLEGEPVPPAHAVELAHVLPRWSRTAMIAIAVIVLTGAFQTWREIGEFGALFDTTYGRLLLYKLWFVLGAL
GLGFLARRWVLRHYHPEPGPQVTSIALTGLRRGVLFEVLIGAVVLAVTAILVNTIPGRDSYAPPFARTTVAGPLTVDINV
SPTRTGAQTMHIYTYDPQGRPQRLVEASGELSLPSAGVGPLQVPLVEVADGHAVAEGVGVPLPGQWQLRFTLRVNDFDQY
VTTVFYDVR
>Mature_648_residues
PTPAGRGGTPAWAEHHPERNIMTGSERRGLERGAGRRRAGEPSRRHVGARRVLAVCALAAVAVLGMALPASAHAVLTGSD
PVGGAALDTAPAQVTLTFSESVSVKSDSIRILDTAGARADEGGAHAGAAASQATVALRAGLGRGTYVVSWRVVSADSHPV
GGAFAFGVGGPPDAGAAAALPSGGGGSRVVGVALGTARFIAFAGAALLIGATFFVAVLWPAGARRSAPVRLIAAGWLLSL
VGAVGMLLFQGPYTAGSGISGIFRGDPLATTLDGRYGQLLAIRVLALLLAVPLLRRLRDPEMTEPGDDGVRHPSGAGRRG
LVELAGLGLALVVTMAMIGHASAGETVWLATASVTLHTAAMAIWLGGLCVLGLTLLGWSGQGAGDGHGSSDGTGTGNDTG
DDGMGRDASLEGEPVPPAHAVELAHVLPRWSRTAMIAIAVIVLTGAFQTWREIGEFGALFDTTYGRLLLYKLWFVLGALG
LGFLARRWVLRHYHPEPGPQVTSIALTGLRRGVLFEVLIGAVVLAVTAILVNTIPGRDSYAPPFARTTVAGPLTVDINVS
PTRTGAQTMHIYTYDPQGRPQRLVEASGELSLPSAGVGPLQVPLVEVADGHAVAEGVGVPLPGQWQLRFTLRVNDFDQYV
TTVFYDVR

Specific function: Involved in uptake of extracellular oxidized copper under copper-limiting conditions [H]

COG id: COG2372

COG function: function code R; Uncharacterized protein, homolog of Cu resistance protein CopC

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the CopD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007348
- InterPro:   IPR008457
- InterPro:   IPR014755
- InterPro:   IPR014756 [H]

Pfam domain/function: PF04234 CopC; PF05425 CopD [H]

EC number: NA

Molecular weight: Translated: 66873; Mature: 66741

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTPAGRGGTPAWAEHHPERNIMTGSERRGLERGAGRRRAGEPSRRHVGARRVLAVCALA
CCCCCCCCCCCCHHHHCCCCCCCCCCHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
AVAVLGMALPASAHAVLTGSDPVGGAALDTAPAQVTLTFSESVSVKSDSIRILDTAGARA
HHHHHHHHCCCCCCEEEECCCCCCCCEECCCCCEEEEEECCCCEECCCCEEEEECCCCCC
DEGGAHAGAAASQATVALRAGLGRGTYVVSWRVVSADSHPVGGAFAFGVGGPPDAGAAAA
CCCCCCCCCCHHHHHHHEECCCCCCEEEEEEEEEECCCCCCCCEEEECCCCCCCCCCCCC
LPSGGGGSRVVGVALGTARFIAFAGAALLIGATFFVAVLWPAGARRSAPVRLIAAGWLLS
CCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHH
LVGAVGMLLFQGPYTAGSGISGIFRGDPLATTLDGRYGQLLAIRVLALLLAVPLLRRLRD
HHHHHHHHHHCCCCCCCCCCCCEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCC
PEMTEPGDDGVRHPSGAGRRGLVELAGLGLALVVTMAMIGHASAGETVWLATASVTLHTA
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHH
AMAIWLGGLCVLGLTLLGWSGQGAGDGHGSSDGTGTGNDTGDDGMGRDASLEGEPVPPAH
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
AVELAHVLPRWSRTAMIAIAVIVLTGAFQTWREIGEFGALFDTTYGRLLLYKLWFVLGAL
HHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLGFLARRWVLRHYHPEPGPQVTSIALTGLRRGVLFEVLIGAVVLAVTAILVNTIPGRDS
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
YAPPFARTTVAGPLTVDINVSPTRTGAQTMHIYTYDPQGRPQRLVEASGELSLPSAGVGP
CCCCCHHHEECCCEEEEEECCCCCCCCEEEEEEEECCCCCHHHHHHCCCCCCCCCCCCCC
LQVPLVEVADGHAVAEGVGVPLPGQWQLRFTLRVNDFDQYVTTVFYDVR
CEEEEEEECCCCCHHCCCCCCCCCCEEEEEEEEECCHHHHHHHHHEECC
>Mature Secondary Structure 
PTPAGRGGTPAWAEHHPERNIMTGSERRGLERGAGRRRAGEPSRRHVGARRVLAVCALA
CCCCCCCCCCCHHHHCCCCCCCCCCHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
AVAVLGMALPASAHAVLTGSDPVGGAALDTAPAQVTLTFSESVSVKSDSIRILDTAGARA
HHHHHHHHCCCCCCEEEECCCCCCCCEECCCCCEEEEEECCCCEECCCCEEEEECCCCCC
DEGGAHAGAAASQATVALRAGLGRGTYVVSWRVVSADSHPVGGAFAFGVGGPPDAGAAAA
CCCCCCCCCCHHHHHHHEECCCCCCEEEEEEEEEECCCCCCCCEEEECCCCCCCCCCCCC
LPSGGGGSRVVGVALGTARFIAFAGAALLIGATFFVAVLWPAGARRSAPVRLIAAGWLLS
CCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHH
LVGAVGMLLFQGPYTAGSGISGIFRGDPLATTLDGRYGQLLAIRVLALLLAVPLLRRLRD
HHHHHHHHHHCCCCCCCCCCCCEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCC
PEMTEPGDDGVRHPSGAGRRGLVELAGLGLALVVTMAMIGHASAGETVWLATASVTLHTA
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHH
AMAIWLGGLCVLGLTLLGWSGQGAGDGHGSSDGTGTGNDTGDDGMGRDASLEGEPVPPAH
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
AVELAHVLPRWSRTAMIAIAVIVLTGAFQTWREIGEFGALFDTTYGRLLLYKLWFVLGAL
HHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLGFLARRWVLRHYHPEPGPQVTSIALTGLRRGVLFEVLIGAVVLAVTAILVNTIPGRDS
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
YAPPFARTTVAGPLTVDINVSPTRTGAQTMHIYTYDPQGRPQRLVEASGELSLPSAGVGP
CCCCCHHHEECCCEEEEEECCCCCCCCEEEEEEEECCCCCHHHHHHCCCCCCCCCCCCCC
LQVPLVEVADGHAVAEGVGVPLPGQWQLRFTLRVNDFDQYVTTVFYDVR
CEEEEEEECCCCCHHCCCCCCCCCCEEEEEEEEECCHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Cu [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]