| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is 158318862
Identifier: 158318862
GI number: 158318862
Start: 8723682
End: 8724164
Strand: Reverse
Name: 158318862
Synonym: Franean1_7143
Alternate gene names: NA
Gene position: 8724164-8723682 (Counterclockwise)
Preceding gene: 158318864
Following gene: 158318857
Centisome position: 97.13
GC content: 69.57
Gene sequence:
>483_bases ATGAGCCGATTGGCCGGCCTGGGCTGGCGCGGCTTTCGGGCTCGGGCACGCCTTCCAGCGCCTGCACCGCGTCGTCGACG TGCGCTGCTGCGGCTGCTGCTGCCCCGCGGTGACCGTGCCAAGGACATCGAGATCGTCACCCTGCGCCATCAGATCACCG TGCTGCAACGCCAGCTCGACGGCGCAACGGATTCAGTTCCAGCCCGCCGACCGTGCCTTGCTCGCCGCACTCCTGCATAC GTTGCCGCGGCCAACCCTGCACCGCCTGCGGCTACTGGTCCGCCCGGAGACTTTTCTGCGCTGGCACCGCGCCCTAATCA CCCGCCACCACGCCGCCGCCTCCCGTCCCAAACGGCGCGGTCGGCCCCGCACTGTCCGCTCGATCCGCGCTCTAGTCAGG CCCTCTATACCCGCCTCGGGTTCGAAGTCGTGCGGATCGAGGATCCGCGCATGTCGATGCAGTGGACCCCGGGCAACGCG TGA
Upstream 100 bases:
>100_bases TGCCCATGGGGAGATTCGGTCCTGCCCGGCAGCGTCTGCCGCATGACCTGGCCTCGGCCACCGTGGTGGCTCGCGCCGTC TAGGAGCAAGTCCCCGGTGG
Downstream 100 bases:
>100_bases GGCACTCCCATTGTCCGATCTTCAGCCGAACGTGCCCCTAACGTGCCCCCAAACGGGATGGTGGCCCAGCCAACGCTGCC GCCGGCCTGACGGGAACGGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 160; Mature: 159
Protein sequence:
>160_residues MSRLAGLGWRGFRARARLPAPAPRRRRALLRLLLPRGDRAKDIEIVTLRHQITVLQRQLDGATDSVPARRPCLARRTPAY VAAANPAPPAATGPPGDFSALAPRPNHPPPRRRLPSQTARSAPHCPLDPRSSQALYTRLGFEVVRIEDPRMSMQWTPGNA
Sequences:
>Translated_160_residues MSRLAGLGWRGFRARARLPAPAPRRRRALLRLLLPRGDRAKDIEIVTLRHQITVLQRQLDGATDSVPARRPCLARRTPAY VAAANPAPPAATGPPGDFSALAPRPNHPPPRRRLPSQTARSAPHCPLDPRSSQALYTRLGFEVVRIEDPRMSMQWTPGNA >Mature_159_residues SRLAGLGWRGFRARARLPAPAPRRRRALLRLLLPRGDRAKDIEIVTLRHQITVLQRQLDGATDSVPARRPCLARRTPAYV AAANPAPPAATGPPGDFSALAPRPNHPPPRRRLPSQTARSAPHCPLDPRSSQALYTRLGFEVVRIEDPRMSMQWTPGNA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17678; Mature: 17547
Theoretical pI: Translated: 12.41; Mature: 12.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRLAGLGWRGFRARARLPAPAPRRRRALLRLLLPRGDRAKDIEIVTLRHQITVLQRQLD CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHC GATDSVPARRPCLARRTPAYVAAANPAPPAATGPPGDFSALAPRPNHPPPRRRLPSQTAR CCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH SAPHCPLDPRSSQALYTRLGFEVVRIEDPRMSMQWTPGNA CCCCCCCCCCCCHHHHHHCCEEEEEEECCCCEEEECCCCC >Mature Secondary Structure SRLAGLGWRGFRARARLPAPAPRRRRALLRLLLPRGDRAKDIEIVTLRHQITVLQRQLD CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHC GATDSVPARRPCLARRTPAYVAAANPAPPAATGPPGDFSALAPRPNHPPPRRRLPSQTAR CCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH SAPHCPLDPRSSQALYTRLGFEVVRIEDPRMSMQWTPGNA CCCCCCCCCCCCHHHHHHCCEEEEEEECCCCEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA