| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158318820
Identifier: 158318820
GI number: 158318820
Start: 8662007
End: 8663095
Strand: Reverse
Name: 158318820
Synonym: Franean1_7094
Alternate gene names: NA
Gene position: 8663095-8662007 (Counterclockwise)
Preceding gene: 158318824
Following gene: 158318819
Centisome position: 96.45
GC content: 66.85
Gene sequence:
>1089_bases GTGCCTGGCCCGAGTGCGGAACCCATCGAGTTGTCGGCTGCTGAGCGTGCGGTGTTGGAGGGGTGGGCCCGGCGACGCAA GACCGCGCAGGCGCTGGCGTTGAGGTCGCGGATCGTGCTGGCCTGCGCGGACGGCGGGACGAACTCAGGGGTCGCCGCCG GGATGGGGATCACCCGGGGAACGGTGGCGAAGTGGCGGAACCGGTTCACGGTCGACCGGCTGGAAGGCCTGTCGGACGAG GAACGTCCGGGGGCGCCGCGGAAGGTCACCGACGCGCAGGTCGAGGCGGTGATCGCGAGGACGTTGGAGGAGAAGCCGCC GAACGGTGACACGCACTGGTCGTCACGGTCGATGGCGAGGGCCAGTGGGTTGTCGCAGTCGACGGTGTCGCGGATGTGGC GGGCGTTCGGGTTGAAACCGCACCTGGTCGAGACCTGGAAGCTGTCCACGGACCCGCTGTTCGTGGACAAGGTCCGTGAC GTGGTCGGGGTCTACCTGGACCCGCCGGAGAAGGCGATCGTGCTCTGCGTCGACGAGAAATCGCAGGTCCAGGCCCTGGA CCGGACCGCGCCGGTGTTGCCGATGATGCCGGGCACGCCCGAGCGGATGACCCATGACTACGTCCGCCATGGCACGACCA GCCTGTTCGCCGCGCTCGACCCGACGTCGGGCTCGGTGATCGCGCAGACCTACCGGCGGCACCGCCACCAGGAGTTCCTG CGTTTCCTCAAGCTGATCGACGGATCCGTCCCGAAGGGCTACGACCTGCACCTGGTCCTGGACAACTACGCCACCCACAA GACCCCTGCGGTGAAGAACTGGCTGCTGCGCCACCCCCGCTTCCACCTGCACTTCACTCCGACGTCGGCGTCGTGGATGA ACCTGGTCGAACGCTGGTTCGCCGAGCTGACCAACCGCAAGCTGCGCCGATCCACGCACCGGTCGGTCGTCGAACTCGAA GCTGACATCCGTAAATGGATCAACGCTTGGAACAAGGACCCGAAGCCGTTCGTCTGGGCCAAGACCGCCGACGAGATCCT TGAAACCCTCGCCGCATACTGCCAGCGAATCAGCGACTCAGCACACTAG
Upstream 100 bases:
>100_bases CCAGGCGGCGTCGTCACGTCTGAGGTGTCGCCCCAGAGGGCGCCCATCGGCCGCCGCTAGTGTGCTGAGTCTTAGATTCG TGCGCGGATAGAATGGGTGG
Downstream 100 bases:
>100_bases TGCGGCGTAAACAAATACTCGTTCCAGTGACACTGTTAGGCTAGAAAAAGTGTGGGTAAATTGGACACATGATCCTAACT GATAATCAACGCAATATTCT
Product: putative transposase
Products: NA
Alternate protein names: Integrase Catalytic Region; ISRSO5-Transposase Protein; ISMsm2 Transposase; Feruloyl Esterase; Isrso5-Transposase Protein; LuxR Family Transcriptional Regulator; ISMsm5 Transposase; Integrase Catalytic Subunit; LOW QUALITY PROTEIN Transposase; Transposase And Inactivated Derivatives; Transcriptional Regulator AraC Family; Aminoglycoside Phosphotransferase; LOW QUALITY PROTEIN ISMsm5 Transposase; GntR Family Transcriptional Regulator; ISPsy1 Transposase; Transposase-Fragment; Inactivated Transposase; Integrase Catalytic Domain-Containing Protein; Transposase Or Inactivated Derivative; Regulatory Protein LuxR; ISPsy25 Transposase; ISBmu8 Transposase; Transposase Of; Transposase Fragment
Number of amino acids: Translated: 362; Mature: 361
Protein sequence:
>362_residues MPGPSAEPIELSAAERAVLEGWARRRKTAQALALRSRIVLACADGGTNSGVAAGMGITRGTVAKWRNRFTVDRLEGLSDE ERPGAPRKVTDAQVEAVIARTLEEKPPNGDTHWSSRSMARASGLSQSTVSRMWRAFGLKPHLVETWKLSTDPLFVDKVRD VVGVYLDPPEKAIVLCVDEKSQVQALDRTAPVLPMMPGTPERMTHDYVRHGTTSLFAALDPTSGSVIAQTYRRHRHQEFL RFLKLIDGSVPKGYDLHLVLDNYATHKTPAVKNWLLRHPRFHLHFTPTSASWMNLVERWFAELTNRKLRRSTHRSVVELE ADIRKWINAWNKDPKPFVWAKTADEILETLAAYCQRISDSAH
Sequences:
>Translated_362_residues MPGPSAEPIELSAAERAVLEGWARRRKTAQALALRSRIVLACADGGTNSGVAAGMGITRGTVAKWRNRFTVDRLEGLSDE ERPGAPRKVTDAQVEAVIARTLEEKPPNGDTHWSSRSMARASGLSQSTVSRMWRAFGLKPHLVETWKLSTDPLFVDKVRD VVGVYLDPPEKAIVLCVDEKSQVQALDRTAPVLPMMPGTPERMTHDYVRHGTTSLFAALDPTSGSVIAQTYRRHRHQEFL RFLKLIDGSVPKGYDLHLVLDNYATHKTPAVKNWLLRHPRFHLHFTPTSASWMNLVERWFAELTNRKLRRSTHRSVVELE ADIRKWINAWNKDPKPFVWAKTADEILETLAAYCQRISDSAH >Mature_361_residues PGPSAEPIELSAAERAVLEGWARRRKTAQALALRSRIVLACADGGTNSGVAAGMGITRGTVAKWRNRFTVDRLEGLSDEE RPGAPRKVTDAQVEAVIARTLEEKPPNGDTHWSSRSMARASGLSQSTVSRMWRAFGLKPHLVETWKLSTDPLFVDKVRDV VGVYLDPPEKAIVLCVDEKSQVQALDRTAPVLPMMPGTPERMTHDYVRHGTTSLFAALDPTSGSVIAQTYRRHRHQEFLR FLKLIDGSVPKGYDLHLVLDNYATHKTPAVKNWLLRHPRFHLHFTPTSASWMNLVERWFAELTNRKLRRSTHRSVVELEA DIRKWINAWNKDPKPFVWAKTADEILETLAAYCQRISDSAH
Specific function: Unknown
COG id: COG3335
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40779; Mature: 40648
Theoretical pI: Translated: 10.20; Mature: 10.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPGPSAEPIELSAAERAVLEGWARRRKTAQALALRSRIVLACADGGTNSGVAAGMGITRG CCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCHHCCCCCHH TVAKWRNRFTVDRLEGLSDEERPGAPRKVTDAQVEAVIARTLEEKPPNGDTHWSSRSMAR HHHHHHHCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH ASGLSQSTVSRMWRAFGLKPHLVETWKLSTDPLFVDKVRDVVGVYLDPPEKAIVLCVDEK HCCCCHHHHHHHHHHHCCCCCHHHEEECCCCCHHHHHHHHHHHEEECCCCCEEEEEECCH SQVQALDRTAPVLPMMPGTPERMTHDYVRHGTTSLFAALDPTSGSVIAQTYRRHRHQEFL HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHEEEEECCCCCHHHHHHHHHHHHHHHH RFLKLIDGSVPKGYDLHLVLDNYATHKTPAVKNWLLRHPRFHLHFTPTSASWMNLVERWF HHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHH AELTNRKLRRSTHRSVVELEADIRKWINAWNKDPKPFVWAKTADEILETLAAYCQRISDS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHCCC AH CC >Mature Secondary Structure PGPSAEPIELSAAERAVLEGWARRRKTAQALALRSRIVLACADGGTNSGVAAGMGITRG CCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCHHCCCCCHH TVAKWRNRFTVDRLEGLSDEERPGAPRKVTDAQVEAVIARTLEEKPPNGDTHWSSRSMAR HHHHHHHCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH ASGLSQSTVSRMWRAFGLKPHLVETWKLSTDPLFVDKVRDVVGVYLDPPEKAIVLCVDEK HCCCCHHHHHHHHHHHCCCCCHHHEEECCCCCHHHHHHHHHHHEEECCCCCEEEEEECCH SQVQALDRTAPVLPMMPGTPERMTHDYVRHGTTSLFAALDPTSGSVIAQTYRRHRHQEFL HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHEEEEECCCCCHHHHHHHHHHHHHHHH RFLKLIDGSVPKGYDLHLVLDNYATHKTPAVKNWLLRHPRFHLHFTPTSASWMNLVERWF HHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHH AELTNRKLRRSTHRSVVELEADIRKWINAWNKDPKPFVWAKTADEILETLAAYCQRISDS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHCCC AH CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA