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The map label for this gene is limC [H]

Identifier: 158318824

GI number: 158318824

Start: 8666086

End: 8666679

Strand: Reverse

Name: limC [H]

Synonym: Franean1_7098

Alternate gene names: 158318824

Gene position: 8666679-8666086 (Counterclockwise)

Preceding gene: 158318827

Following gene: 158318820

Centisome position: 96.49

GC content: 67.34

Gene sequence:

>594_bases
ATGGGCAAGCTAGACGGCAAGGTCGCCCTGATCACGGGTGCGGCGCGAGGACAGGGCCGAAGCCACGCGGTCCGGCTCGC
CGCCGAGGGCATCGCCATCGACATCTGCGGGCCGATCGCCAGCGTGCGCTACCCCCTCGCCACGCCCGACGACCTGGCCG
TGACAGCCAAGGATGTCGAGGCGCTCGGCCGCCGCACCGTGGCCGTCCAGGCCGACGTCCGTGACCGCGCTCAGCTGCGG
GCCGCCCTGGACCAGGGCCTCGCCGCACTCGGCCGGCTCGATGTGGTGTGCGCGAATGCGGGAATCTGCCCCACCGAGGA
CGAGACGCTCTGCAGCTGCTCCAGGCAACGCTTCCGTAACGCGTGGTTAGTCGACCAATCGGCCTCGTCGAATGCCCGCC
GGGCGGCCGAGATCGCTCGGCGCATCTCTGCCTTCGATGCGTCGGCGACTTGGCCCAGCACTTCCTTCGTTGCCGGGTTG
ATGTTGTCGAAGGTCTTGCCTGAGTCAGCCTCGATGAGCTCACCATCGACGAGCATCCTCGACTCGGAGGTGACGACTGC
TCTGTTCACCAAACCCCCTCCATATGCTTTATGA

Upstream 100 bases:

>100_bases
ACGGCGGACCGCCCCGGCCACTGTCTGAAATCCGGTACTCCGAGCGGAGACCGGTCAGCCGAACCAGGAACCATGTAGTG
CCTACGAACAGGAGCAGCGA

Downstream 100 bases:

>100_bases
ATTTATATAGCGAACATTGAAAGGTTGATAAAATACGCCGGGCATAACATGTATTCGGGGGGTGGGAGGCCGCGACGCAC
AGGCGATGCCCTATCCTCGC

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: (4R,6S)-carveol dehydrogenase; CDH; Carveol dehydrogenase [H]

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MGKLDGKVALITGAARGQGRSHAVRLAAEGIAIDICGPIASVRYPLATPDDLAVTAKDVEALGRRTVAVQADVRDRAQLR
AALDQGLAALGRLDVVCANAGICPTEDETLCSCSRQRFRNAWLVDQSASSNARRAAEIARRISAFDASATWPSTSFVAGL
MLSKVLPESASMSSPSTSILDSEVTTALFTKPPPYAL

Sequences:

>Translated_197_residues
MGKLDGKVALITGAARGQGRSHAVRLAAEGIAIDICGPIASVRYPLATPDDLAVTAKDVEALGRRTVAVQADVRDRAQLR
AALDQGLAALGRLDVVCANAGICPTEDETLCSCSRQRFRNAWLVDQSASSNARRAAEIARRISAFDASATWPSTSFVAGL
MLSKVLPESASMSSPSTSILDSEVTTALFTKPPPYAL
>Mature_196_residues
GKLDGKVALITGAARGQGRSHAVRLAAEGIAIDICGPIASVRYPLATPDDLAVTAKDVEALGRRTVAVQADVRDRAQLRA
ALDQGLAALGRLDVVCANAGICPTEDETLCSCSRQRFRNAWLVDQSASSNARRAAEIARRISAFDASATWPSTSFVAGLM
LSKVLPESASMSSPSTSILDSEVTTALFTKPPPYAL

Specific function: Catalyzes the oxidation of carveol to carvone, with a strong stereoselectivity since it efficiently converts only the (6S)-stereoisomers, of which (-)-(4R,6S)-trans-carveol is the better substrate. Displays a broad substrate specificity with a preference

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 20656; Mature: 20524

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKLDGKVALITGAARGQGRSHAVRLAAEGIAIDICGPIASVRYPLATPDDLAVTAKDVE
CCCCCCEEEEEEECCCCCCCCCEEEEEECCEEEEECCCHHHCCCCCCCCCCCEEEHHHHH
ALGRRTVAVQADVRDRAQLRAALDQGLAALGRLDVVCANAGICPTEDETLCSCSRQRFRN
HHCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHC
AWLVDQSASSNARRAAEIARRISAFDASATWPSTSFVAGLMLSKVLPESASMSSPSTSIL
CEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHH
DSEVTTALFTKPPPYAL
HHHHHHHEECCCCCCCC
>Mature Secondary Structure 
GKLDGKVALITGAARGQGRSHAVRLAAEGIAIDICGPIASVRYPLATPDDLAVTAKDVE
CCCCCEEEEEEECCCCCCCCCEEEEEECCEEEEECCCHHHCCCCCCCCCCCEEEHHHHH
ALGRRTVAVQADVRDRAQLRAALDQGLAALGRLDVVCANAGICPTEDETLCSCSRQRFRN
HHCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHC
AWLVDQSASSNARRAAEIARRISAFDASATWPSTSFVAGLMLSKVLPESASMSSPSTSIL
CEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHH
DSEVTTALFTKPPPYAL
HHHHHHHEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10473585 [H]