| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is cmtA [H]
Identifier: 158318800
GI number: 158318800
Start: 8631576
End: 8631884
Strand: Reverse
Name: cmtA [H]
Synonym: Franean1_7072
Alternate gene names: 158318800
Gene position: 8631884-8631576 (Counterclockwise)
Preceding gene: 158318801
Following gene: 158318799
Centisome position: 96.1
GC content: 65.37
Gene sequence:
>309_bases ATGGCAACCATCAAGGGTGAGGACATCCACAAGCTCGTTGTCGCCTGCGACGCGGGAATGGGAAGCAGCGTGATGCTGGC CAGCCAGCTCCGCAAGCAGCTCAAGGCGTACGCGGTCACCGTCGAGCACACCCCGGTGAACTCCATTCCGGCGGACGCCG ATCTGGTCGTCTGCCACGTCGGCCTGGCTGACCGGGCCCGCCGGGGGGTGCCGGACAAGCCGATCGTGACATTCCAGGTG TTCATAGGTGATCCGGCCGTGGCCAACGTGCTGGCCGCCATCCGCGAGGGGAAAGTGCTCGATGTCTGA
Upstream 100 bases:
>100_bases TCCGGGCAGTACGAGCGAGGGGAAGGTTTCCAGCGGCGCGGCTAGCCCGGTGACAGCAGCCTCGCAGCGGCTTTCCGCAG CATCGGAAGGGTGATGGCAT
Downstream 100 bases:
>100_bases GGGACACGGTGCGGCGCGGCAGGACAGCCCCGGCGGCACCATGAGCCGGCTGCTCGACCCGAGCGCGGTGCGCCTCGCCG AGGTGGCAGCGAGCCGGGAG
Product: phosphotransferase system lactose/cellobiose-specific IIB subunit
Products: NA
Alternate protein names: EIICB-Mtl; EII-Mtl; Mannitol permease IIC component; PTS system mannitol-specific EIIC component; Mannitol-specific phosphotransferase enzyme IIB component; PTS system mannitol-specific EIIB component [H]
Number of amino acids: Translated: 102; Mature: 101
Protein sequence:
>102_residues MATIKGEDIHKLVVACDAGMGSSVMLASQLRKQLKAYAVTVEHTPVNSIPADADLVVCHVGLADRARRGVPDKPIVTFQV FIGDPAVANVLAAIREGKVLDV
Sequences:
>Translated_102_residues MATIKGEDIHKLVVACDAGMGSSVMLASQLRKQLKAYAVTVEHTPVNSIPADADLVVCHVGLADRARRGVPDKPIVTFQV FIGDPAVANVLAAIREGKVLDV >Mature_101_residues ATIKGEDIHKLVVACDAGMGSSVMLASQLRKQLKAYAVTVEHTPVNSIPADADLVVCHVGLADRARRGVPDKPIVTFQVF IGDPAVANVLAAIREGKVLDV
Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. This
COG id: COG2213
COG function: function code G; Phosphotransferase system, mannitol-specific IIBC component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PTS EIIC type-2 domain [H]
Homologues:
Organism=Escherichia coli, GI1789301, Length=81, Percent_Identity=43.2098765432099, Blast_Score=72, Evalue=6e-15, Organism=Escherichia coli, GI1790027, Length=77, Percent_Identity=40.2597402597403, Blast_Score=64, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013011 - InterPro: IPR003501 - InterPro: IPR003352 - InterPro: IPR013014 - InterPro: IPR004718 [H]
Pfam domain/function: PF02378 PTS_EIIC; PF02302 PTS_IIB [H]
EC number: =2.7.1.69 [H]
Molecular weight: Translated: 10761; Mature: 10630
Theoretical pI: Translated: 7.52; Mature: 7.52
Prosite motif: PS51099 PTS_EIIB_TYPE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATIKGEDIHKLVVACDAGMGSSVMLASQLRKQLKAYAVTVEHTPVNSIPADADLVVCHV CCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCEEEEEC GLADRARRGVPDKPIVTFQVFIGDPAVANVLAAIREGKVLDV CCHHHHHCCCCCCCEEEEEEEECCHHHHHHHHHHHCCCEECC >Mature Secondary Structure ATIKGEDIHKLVVACDAGMGSSVMLASQLRKQLKAYAVTVEHTPVNSIPADADLVVCHV CCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCEEEEEC GLADRARRGVPDKPIVTFQVFIGDPAVANVLAAIREGKVLDV CCHHHHHCCCCCCCEEEEEEEECCHHHHHHHHHHHCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]