| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is yegM [C]
Identifier: 158318696
GI number: 158318696
Start: 8488571
End: 8490073
Strand: Reverse
Name: yegM [C]
Synonym: Franean1_6964
Alternate gene names: 158318696
Gene position: 8490073-8488571 (Counterclockwise)
Preceding gene: 158318699
Following gene: 158318695
Centisome position: 94.52
GC content: 70.59
Gene sequence:
>1503_bases ATGGGCCTGGTTATTCATAGCCTACGCATAGATTCCGCACGGGTTGCGCACAGGTACCCCCGAAATGCTCGCGGGCGTGC AGAATCAGACACCGGCCGAAGGCGCCCGGCGATGACATCCGTGGGCCGGCTGGCTGTGCGTCGTCGGCCACTGGTCGCGC TGGCCGTCGTGATCGTGGTGGTGGCCGTCGCCGCGGGGATCACCATCCATGTGGTCGGCCGCGGTGGATCCTCGGCCGCG GCGGCGACTGTCATCTCCCGGACCGTGACCGCGGAGATCGGGACGATCAGGCAGTCCATCTCCACCACCGGCACGATCGC ACCGGCCACTCAGGCTGACCTGACCTTCCCGGCTTCGGGCAAGGTCACCGGCGTCCTGGTGAGCGAGGGCGACACGGTGA CCACCGGGCAGCAACTCGCGACCATCGACTCGGCGTCGCTGGCGGCGAGTCTCGCCCAGGCCAAGCTGACGTTGGCCAAC GGTCAGGAGAAGCTGGCCTCCGACCAGACAGCGGGGGCGTCCAGCGAGCAGCTCGCCGCCGATCAGGCGTCAGTCACGAC CGCCACCGACGGGGTCACCGCGGCGCAGACGGCGCTGGCCGGGGCGACCATGACGTCACCGGTCAACGGAGTTGTGGTGA GCGTCTCGCTCGTGGTGGGTCAGCAGGTGTCGGGATCGTCCAACGGGAGCGGCTCCGGATCCTCCGGCGGCGGGTCCGGC ACCTCGACCGGTGGAATGGGTTCCTCCGGCGGGACGTCCGCCGGCTCGGGAGCGACGTCCACCTCGTCGACCTCATCGTC GAGTGGGCAGATCACAGTGATCAGCACCGATTCGTGGATCGTCAACGCCAGCGTCGACTCCAACAGTGTCGGCCTGGTAG CGAAGGGCAACCAGGCGACGATCGTGCCGGGCTCGGGCACCTCGACCGGCGCCGGGGGCGGGGCTGCTCCCCGCGCCGGC GCGGGAACCGGCGGCGGCGTGGCCGCGGGCGGCGGCGGCAGCGGCAGCGGCTCTGGTGGCACCAGTGGTACAGGCGGCAC GGTCTACGGGACGGTGTCCTCGGTCGGGCTGATCGCATCCAGTTCCGGGCAGACGGCGAGTTTTCCGGTAGTGATCAAGG TGACCGGCAGTCCCAGCGGGCTGCACGCCGGTGACACCGCGACCGTCGCGCTGATCTACAAGCAGCTGAGCAACGTCCTG GTGCTCCCGACGGGGGCCATCAGCCAGGAGAACGGGAAGTCCGTCGTCCGTGTCGTGTCGGGCACGACGACGACAACCCG GGCGGTGACGACCGGGGTCTCCGGCGGCGGCTCCACCGAGATCGTCTCCGGTCTGTCGGAAGGCGACCAGGTGCTCGTCG AGATGGCGGGCGGCGCGGCCGGTCCCGGTGGATCCGGCGGGGGCACGGGAAGCAGAACCGGCGGCCAGGGCTACGGCGGT GGCGGGTTCCCGGCCGGCGGGTTCCCGAGTGGTGGCGGGTTCCCGGGCAGCGGTGGTAACTGA
Upstream 100 bases:
>100_bases TCGCCTTCGCGAGACAACCGTGTTTCGCGCGGACCCACCAGATGATCGAGAATTATTCGTGTACGCATGGATCGATCAAT GGAAATCCATGCAGTAGACA
Downstream 100 bases:
>100_bases CATGGCCAGGAGACCGCCCGAACGGGAACCCGCCACCACGTCATCCCGGTCGCCCGCGACAGTGCCGCCACCGGAACCCC CGACCACGCCGGTCACGCGG
Product: RND family efflux transporter MFP subunit
Products: NA
Alternate protein names: Secretion Protein HlyD
Number of amino acids: Translated: 500; Mature: 499
Protein sequence:
>500_residues MGLVIHSLRIDSARVAHRYPRNARGRAESDTGRRRPAMTSVGRLAVRRRPLVALAVVIVVVAVAAGITIHVVGRGGSSAA AATVISRTVTAEIGTIRQSISTTGTIAPATQADLTFPASGKVTGVLVSEGDTVTTGQQLATIDSASLAASLAQAKLTLAN GQEKLASDQTAGASSEQLAADQASVTTATDGVTAAQTALAGATMTSPVNGVVVSVSLVVGQQVSGSSNGSGSGSSGGGSG TSTGGMGSSGGTSAGSGATSTSSTSSSSGQITVISTDSWIVNASVDSNSVGLVAKGNQATIVPGSGTSTGAGGGAAPRAG AGTGGGVAAGGGGSGSGSGGTSGTGGTVYGTVSSVGLIASSSGQTASFPVVIKVTGSPSGLHAGDTATVALIYKQLSNVL VLPTGAISQENGKSVVRVVSGTTTTTRAVTTGVSGGGSTEIVSGLSEGDQVLVEMAGGAAGPGGSGGGTGSRTGGQGYGG GGFPAGGFPSGGGFPGSGGN
Sequences:
>Translated_500_residues MGLVIHSLRIDSARVAHRYPRNARGRAESDTGRRRPAMTSVGRLAVRRRPLVALAVVIVVVAVAAGITIHVVGRGGSSAA AATVISRTVTAEIGTIRQSISTTGTIAPATQADLTFPASGKVTGVLVSEGDTVTTGQQLATIDSASLAASLAQAKLTLAN GQEKLASDQTAGASSEQLAADQASVTTATDGVTAAQTALAGATMTSPVNGVVVSVSLVVGQQVSGSSNGSGSGSSGGGSG TSTGGMGSSGGTSAGSGATSTSSTSSSSGQITVISTDSWIVNASVDSNSVGLVAKGNQATIVPGSGTSTGAGGGAAPRAG AGTGGGVAAGGGGSGSGSGGTSGTGGTVYGTVSSVGLIASSSGQTASFPVVIKVTGSPSGLHAGDTATVALIYKQLSNVL VLPTGAISQENGKSVVRVVSGTTTTTRAVTTGVSGGGSTEIVSGLSEGDQVLVEMAGGAAGPGGSGGGTGSRTGGQGYGG GGFPAGGFPSGGGFPGSGGN >Mature_499_residues GLVIHSLRIDSARVAHRYPRNARGRAESDTGRRRPAMTSVGRLAVRRRPLVALAVVIVVVAVAAGITIHVVGRGGSSAAA ATVISRTVTAEIGTIRQSISTTGTIAPATQADLTFPASGKVTGVLVSEGDTVTTGQQLATIDSASLAASLAQAKLTLANG QEKLASDQTAGASSEQLAADQASVTTATDGVTAAQTALAGATMTSPVNGVVVSVSLVVGQQVSGSSNGSGSGSSGGGSGT STGGMGSSGGTSAGSGATSTSSTSSSSGQITVISTDSWIVNASVDSNSVGLVAKGNQATIVPGSGTSTGAGGGAAPRAGA GTGGGVAAGGGGSGSGSGGTSGTGGTVYGTVSSVGLIASSSGQTASFPVVIKVTGSPSGLHAGDTATVALIYKQLSNVLV LPTGAISQENGKSVVRVVSGTTTTTRAVTTGVSGGGSTEIVSGLSEGDQVLVEMAGGAAGPGGSGGGTGSRTGGQGYGGG GFPAGGFPSGGGFPGSGGN
Specific function: Unknown
COG id: COG0845
COG function: function code M; Membrane-fusion protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46927; Mature: 46796
Theoretical pI: Translated: 10.43; Mature: 10.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLVIHSLRIDSARVAHRYPRNARGRAESDTGRRRPAMTSVGRLAVRRRPLVALAVVIVV CCEEEEEEECCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHH VAVAAGITIHVVGRGGSSAAAATVISRTVTAEIGTIRQSISTTGTIAPATQADLTFPASG HHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCC KVTGVLVSEGDTVTTGQQLATIDSASLAASLAQAKLTLANGQEKLASDQTAGASSEQLAA CEEEEEEECCCEEECCCCEEEECHHHHHHHHHHHEEEECCCHHHHHCCCCCCCCHHHHHC DQASVTTATDGVTAAQTALAGATMTSPVNGVVVSVSLVVGQQVSGSSNGSGSGSSGGGSG CCCCEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCC TSTGGMGSSGGTSAGSGATSTSSTSSSSGQITVISTDSWIVNASVDSNSVGLVAKGNQAT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCEEEEEECCEEE IVPGSGTSTGAGGGAAPRAGAGTGGGVAAGGGGSGSGSGGTSGTGGTVYGTVSSVGLIAS EECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEECCCCEEEEC SSGQTASFPVVIKVTGSPSGLHAGDTATVALIYKQLSNVLVLPTGAISQENGKSVVRVVS CCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEEC GTTTTTRAVTTGVSGGGSTEIVSGLSEGDQVLVEMAGGAAGPGGSGGGTGSRTGGQGYGG CCCCEEEEEEECCCCCCCHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC GGFPAGGFPSGGGFPGSGGN CCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure GLVIHSLRIDSARVAHRYPRNARGRAESDTGRRRPAMTSVGRLAVRRRPLVALAVVIVV CEEEEEEECCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHH VAVAAGITIHVVGRGGSSAAAATVISRTVTAEIGTIRQSISTTGTIAPATQADLTFPASG HHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCC KVTGVLVSEGDTVTTGQQLATIDSASLAASLAQAKLTLANGQEKLASDQTAGASSEQLAA CEEEEEEECCCEEECCCCEEEECHHHHHHHHHHHEEEECCCHHHHHCCCCCCCCHHHHHC DQASVTTATDGVTAAQTALAGATMTSPVNGVVVSVSLVVGQQVSGSSNGSGSGSSGGGSG CCCCEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCC TSTGGMGSSGGTSAGSGATSTSSTSSSSGQITVISTDSWIVNASVDSNSVGLVAKGNQAT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCEEEEEECCEEE IVPGSGTSTGAGGGAAPRAGAGTGGGVAAGGGGSGSGSGGTSGTGGTVYGTVSSVGLIAS EECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEECCCCEEEEC SSGQTASFPVVIKVTGSPSGLHAGDTATVALIYKQLSNVLVLPTGAISQENGKSVVRVVS CCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEEC GTTTTTRAVTTGVSGGGSTEIVSGLSEGDQVLVEMAGGAAGPGGSGGGTGSRTGGQGYGG CCCCEEEEEEECCCCCCCHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC GGFPAGGFPSGGGFPGSGGN CCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA