| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158318585
Identifier: 158318585
GI number: 158318585
Start: 8353720
End: 8355423
Strand: Reverse
Name: 158318585
Synonym: Franean1_6853
Alternate gene names: NA
Gene position: 8355423-8353720 (Counterclockwise)
Preceding gene: 158318591
Following gene: 158318584
Centisome position: 93.02
GC content: 73.0
Gene sequence:
>1704_bases ATGCACGACATCGTGATCTATGGCGGTGAGGTGGTCGACGGGACGGGTTCGCCGCCCCGTCGCGCGGACGTGGCGATCGA CGGGGAGCGCATCACCGCGGTCGGTGAGGTCGGCGAGCGCGGCCGCCGCCAGATCGACGCCCGCGGGCGCCTGGTGACCC CGGGATTCGTCGACATCCACACCCACCTCGACGCGCAGCTCTTCTGGGACCCGGTGGCCAGCCCGTCCTCGTGGCACGGC GTGACCAGCATCGTCCTGGGTAACTGCGGCGTCACGTTCGCGCCCGTGCGGCCCGGCGAGCAGCGTTACCTCGCCGAGAT GATGGAGTCCGTCGAGGACATCCCGGCCGACACGATCATGGACGGGATCGACTGGAGCTGGGAGAGCTACGGCGACTACC TGAAGGCGCTCGGCCGCCGGCAGCTCGGCGTCAACGTCGGCGGCATGATCGGCCACTGCGCGCTGCGCTACTACGTCATG GGCGCGCGCAGCCTGGACGAGGCCCCCGCCACCGACGAGGACATCGCCAGGATGGCGGCGGTCGTCGGCGAGGCGATCGA CGGCGGCGCCCTCGGCTTCTCCACCTCCCGCAGCTTCATGCACACCGTGCCGGACGGCCGCGCCGTGCCGGGCACGTACG CCCTCGAGGCGGAGCTCGCCGCGATCGCCGGGGCCCTCGCCTCGCGCGGGCGCGGCACGATCGAGGTCGTCCCCCGCATC GGCGAGCGGGACGGACCGGAGCGGCAGAACTCCGTCGCCGAGCTGGCCTGGATGGAGGAGGTGAGCCGCGCCTCGGGGCG CCCGCTCACCTTCGCGATCATGCAGAGCGACCGCCGGCCCGGCCTGTGGTCCTGGGTGATGGACGAGGTGGCCGCCGCCC GCGGCCGCGGCGCCGACCTGCGTCCGCAGACCGCGGCCCGGGGCAGCGGCATCCTCTACGGGCTCGTCGGCCGCACGCCG TACGACGCGCTGCCGGGCTGGGCGAAGTTCATGGAGCAGCCGTGGGCGGAGCGGCTGGCGGCGCTCCGCGACGCCGAGGT GCGCCGCGCGCTGGTCGAGGAGGCGGAGAACCCGGTCGAGCTGTCGGGCCCGCTGGCGCCGAAGGACCCGTCGAAGCTGT ATCTGCTCCCGCCCGGCCCGGCGCGGTACGACGTCGACCCGGGTAACAGCCTGGCGGCCGAGGCGGCTCGCCGCGGGGTC AGCCCGGCGGCGGCGTTCCTCGCCTGCACCCTGGAGACCGACGGCCGCGGGCTGCTCTACTACCCGGTGCTCAACCAGGA CCTCGACGCCGTCGCCGCGATGATCACGAATCCGGACGTCGTCGTCGGCGTCGGGGACGCCGGCGCGCACGTGGCGCTCA CCATGGACGCGGGCCAGCCCACCTTCCTGCTGCGGCACTGGGTGCGTGACAGGGGCCTGCTCGACGTCGGCACGGCGGTG CGCAAGCTGAGCTCCGAGGGGGCCGAGCTGTTCGGGCTCGCCGACCGGGGTGTCCTGAAGCCCGGCGCCTTCGCCGACGT CAACGTGATCGATCTTGATCGCCTCGACCTGGACACCCCCGAGATGCTCGCGGACTTCCCGCACGGGGCGAACCGGTTCG TCCAGCGTGCGCGGGGTTACGACTACACCCTCGTCAACGGCTGTGTCCTGATCGAGGGCGATGAGTTGACCGAGGAGCGT CCGGGACGGATCGTGACCGCATGA
Upstream 100 bases:
>100_bases GCTGCTTGACGGGACACGGCCAGCCTCCCTAGCATTTTTGATGAATGAGGACTTACTCACCAGTCGACCGCCCGTCCGGC GGACCGGAGGAACGGATGCC
Downstream 100 bases:
>100_bases CAGCGGTTCCCGACCAGTTCGGGTTGTTCGACCTGTTCGCCCTCAAGGACCGGGTCGCGGTGGTGACCGGCGCGTCGTCC GGCCTCGGCGCGGGCATCGC
Product: amidohydrolase 3
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 567; Mature: 567
Protein sequence:
>567_residues MHDIVIYGGEVVDGTGSPPRRADVAIDGERITAVGEVGERGRRQIDARGRLVTPGFVDIHTHLDAQLFWDPVASPSSWHG VTSIVLGNCGVTFAPVRPGEQRYLAEMMESVEDIPADTIMDGIDWSWESYGDYLKALGRRQLGVNVGGMIGHCALRYYVM GARSLDEAPATDEDIARMAAVVGEAIDGGALGFSTSRSFMHTVPDGRAVPGTYALEAELAAIAGALASRGRGTIEVVPRI GERDGPERQNSVAELAWMEEVSRASGRPLTFAIMQSDRRPGLWSWVMDEVAAARGRGADLRPQTAARGSGILYGLVGRTP YDALPGWAKFMEQPWAERLAALRDAEVRRALVEEAENPVELSGPLAPKDPSKLYLLPPGPARYDVDPGNSLAAEAARRGV SPAAAFLACTLETDGRGLLYYPVLNQDLDAVAAMITNPDVVVGVGDAGAHVALTMDAGQPTFLLRHWVRDRGLLDVGTAV RKLSSEGAELFGLADRGVLKPGAFADVNVIDLDRLDLDTPEMLADFPHGANRFVQRARGYDYTLVNGCVLIEGDELTEER PGRIVTA
Sequences:
>Translated_567_residues MHDIVIYGGEVVDGTGSPPRRADVAIDGERITAVGEVGERGRRQIDARGRLVTPGFVDIHTHLDAQLFWDPVASPSSWHG VTSIVLGNCGVTFAPVRPGEQRYLAEMMESVEDIPADTIMDGIDWSWESYGDYLKALGRRQLGVNVGGMIGHCALRYYVM GARSLDEAPATDEDIARMAAVVGEAIDGGALGFSTSRSFMHTVPDGRAVPGTYALEAELAAIAGALASRGRGTIEVVPRI GERDGPERQNSVAELAWMEEVSRASGRPLTFAIMQSDRRPGLWSWVMDEVAAARGRGADLRPQTAARGSGILYGLVGRTP YDALPGWAKFMEQPWAERLAALRDAEVRRALVEEAENPVELSGPLAPKDPSKLYLLPPGPARYDVDPGNSLAAEAARRGV SPAAAFLACTLETDGRGLLYYPVLNQDLDAVAAMITNPDVVVGVGDAGAHVALTMDAGQPTFLLRHWVRDRGLLDVGTAV RKLSSEGAELFGLADRGVLKPGAFADVNVIDLDRLDLDTPEMLADFPHGANRFVQRARGYDYTLVNGCVLIEGDELTEER PGRIVTA >Mature_567_residues MHDIVIYGGEVVDGTGSPPRRADVAIDGERITAVGEVGERGRRQIDARGRLVTPGFVDIHTHLDAQLFWDPVASPSSWHG VTSIVLGNCGVTFAPVRPGEQRYLAEMMESVEDIPADTIMDGIDWSWESYGDYLKALGRRQLGVNVGGMIGHCALRYYVM GARSLDEAPATDEDIARMAAVVGEAIDGGALGFSTSRSFMHTVPDGRAVPGTYALEAELAAIAGALASRGRGTIEVVPRI GERDGPERQNSVAELAWMEEVSRASGRPLTFAIMQSDRRPGLWSWVMDEVAAARGRGADLRPQTAARGSGILYGLVGRTP YDALPGWAKFMEQPWAERLAALRDAEVRRALVEEAENPVELSGPLAPKDPSKLYLLPPGPARYDVDPGNSLAAEAARRGV SPAAAFLACTLETDGRGLLYYPVLNQDLDAVAAMITNPDVVVGVGDAGAHVALTMDAGQPTFLLRHWVRDRGLLDVGTAV RKLSSEGAELFGLADRGVLKPGAFADVNVIDLDRLDLDTPEMLADFPHGANRFVQRARGYDYTLVNGCVLIEGDELTEER PGRIVTA
Specific function: Unknown
COG id: COG3653
COG function: function code Q; N-acyl-D-aspartate/D-glutamate deacylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N-acyl-D-amino-acid deacylase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013108 - InterPro: IPR011059 [H]
Pfam domain/function: PF07969 Amidohydro_3 [H]
EC number: NA
Molecular weight: Translated: 60901; Mature: 60901
Theoretical pI: Translated: 4.61; Mature: 4.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHDIVIYGGEVVDGTGSPPRRADVAIDGERITAVGEVGERGRRQIDARGRLVTPGFVDIH CCCEEEECCEEECCCCCCCCCCCEEECCCEEEEEHHHHHHHHHHHCCCCCEECCCEEEEE THLDAQLFWDPVASPSSWHGVTSIVLGNCGVTFAPVRPGEQRYLAEMMESVEDIPADTIM ECCCCEEEECCCCCCCCCCCCEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHCCHHHHH DGIDWSWESYGDYLKALGRRQLGVNVGGMIGHCALRYYVMGARSLDEAPATDEDIARMAA CCCCCCHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH VVGEAIDGGALGFSTSRSFMHTVPDGRAVPGTYALEAELAAIAGALASRGRGTIEVVPRI HHHHCCCCCCCCCCCCCCHHEECCCCCCCCCCEEHHHHHHHHHHHHHHCCCCEEEEEECC GERDGPERQNSVAELAWMEEVSRASGRPLTFAIMQSDRRPGLWSWVMDEVAAARGRGADL CCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCC RPQTAARGSGILYGLVGRTPYDALPGWAKFMEQPWAERLAALRDAEVRRALVEEAENPVE CCCCCCCCCCEEEEECCCCCHHCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCEE LSGPLAPKDPSKLYLLPPGPARYDVDPGNSLAAEAARRGVSPAAAFLACTLETDGRGLLY ECCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCEEEE YPVLNQDLDAVAAMITNPDVVVGVGDAGAHVALTMDAGQPTFLLRHWVRDRGLLDVGTAV ECCCCCCHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHCCCCHHHHHH RKLSSEGAELFGLADRGVLKPGAFADVNVIDLDRLDLDTPEMLADFPHGANRFVQRARGY HHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCHHHHHHHHCCC DYTLVNGCVLIEGDELTEERPGRIVTA CEEEECCEEEEECCCCCCCCCCCEECC >Mature Secondary Structure MHDIVIYGGEVVDGTGSPPRRADVAIDGERITAVGEVGERGRRQIDARGRLVTPGFVDIH CCCEEEECCEEECCCCCCCCCCCEEECCCEEEEEHHHHHHHHHHHCCCCCEECCCEEEEE THLDAQLFWDPVASPSSWHGVTSIVLGNCGVTFAPVRPGEQRYLAEMMESVEDIPADTIM ECCCCEEEECCCCCCCCCCCCEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHCCHHHHH DGIDWSWESYGDYLKALGRRQLGVNVGGMIGHCALRYYVMGARSLDEAPATDEDIARMAA CCCCCCHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH VVGEAIDGGALGFSTSRSFMHTVPDGRAVPGTYALEAELAAIAGALASRGRGTIEVVPRI HHHHCCCCCCCCCCCCCCHHEECCCCCCCCCCEEHHHHHHHHHHHHHHCCCCEEEEEECC GERDGPERQNSVAELAWMEEVSRASGRPLTFAIMQSDRRPGLWSWVMDEVAAARGRGADL CCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCC RPQTAARGSGILYGLVGRTPYDALPGWAKFMEQPWAERLAALRDAEVRRALVEEAENPVE CCCCCCCCCCEEEEECCCCCHHCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCEE LSGPLAPKDPSKLYLLPPGPARYDVDPGNSLAAEAARRGVSPAAAFLACTLETDGRGLLY ECCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCEEEE YPVLNQDLDAVAAMITNPDVVVGVGDAGAHVALTMDAGQPTFLLRHWVRDRGLLDVGTAV ECCCCCCHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHCCCCHHHHHH RKLSSEGAELFGLADRGVLKPGAFADVNVIDLDRLDLDTPEMLADFPHGANRFVQRARGY HHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCHHHHHHHHCCC DYTLVNGCVLIEGDELTEERPGRIVTA CEEEECCEEEEECCCCCCCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]