| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is gno [H]
Identifier: 158318584
GI number: 158318584
Start: 8352941
End: 8353723
Strand: Reverse
Name: gno [H]
Synonym: Franean1_6852
Alternate gene names: 158318584
Gene position: 8353723-8352941 (Counterclockwise)
Preceding gene: 158318585
Following gene: 158318582
Centisome position: 93.0
GC content: 74.07
Gene sequence:
>783_bases ATGACAGCGGTTCCCGACCAGTTCGGGTTGTTCGACCTGTTCGCCCTCAAGGACCGGGTCGCGGTGGTGACCGGCGCGTC GTCCGGCCTCGGCGCGGGCATCGCGCGGGCGCTGGCCACGGCCGGTGCCCGGGTGGCCGTGGTGGCGCGCCGCCGCGACC GGCTCCTCGCGCTCGCGGAGGAGCTGGGCGGCCTGGCCGTCGGCGCCGACCTGCTCGACCCGGAGCAGGTCGACGCGGTG GTGCCGCAGGTCGCCGCCGAGCTCGGCGGGCCGGAGATCCTGGTGAACGCCGCCGGCGCCCGCCTCACCGAGGAACGCGC CGAGAGCGAGCCGATCGACGCCATCAACCGGACCCTGGCGCTGAACCTGGTGGCTCCGCTCCGGCTCAGCCAGGCGGTGT TCCCGCACATGAAGGCGGCCGGGCGGGGCTCGGTGGTCAACATCTCGTCGATCAGCGGCATCGTCGGCGTCCCCGGCATC CCGCAGGCGTCGTACGCCGCGAGCAAGGCGGGGCTGTCCGGGCTCACCTCCGAGCTGGCCGTCCAGTGGGCGCGGCACGA GATCCGGGTCAACACCATCGCCCCGGGCTTCTTCCGTAGCGAGATCACCGACAGCCTGTACGACACCGAGAGCGGCCAGA ACTGGCTGCGGCGGAACACCCCGCTGCCCGGCGACGGCCGGGTGGAGGACTTCCTCGGCGCGGTCCTGTGGCTGGTCAGC GACGCGGGCCGGTACGTGACCGGCCAGACCATCGCGGTGGACGGCGGCTGGACGGCCCGCTGA
Upstream 100 bases:
>100_bases TCCAGCGTGCGCGGGGTTACGACTACACCCTCGTCAACGGCTGTGTCCTGATCGAGGGCGATGAGTTGACCGAGGAGCGT CCGGGACGGATCGTGACCGC
Downstream 100 bases:
>100_bases CCGCCCACGCTCGACGTGCTGGCCCGGGCGCGCCGTACCGCCCGGGCTAGACGCGCCAGATGGGGTTCGGGACGGCGTCC GCCTGCCGGGACCTCGCGTC
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: 5-keto-D-gluconate 5-reductase [H]
Number of amino acids: Translated: 260; Mature: 259
Protein sequence:
>260_residues MTAVPDQFGLFDLFALKDRVAVVTGASSGLGAGIARALATAGARVAVVARRRDRLLALAEELGGLAVGADLLDPEQVDAV VPQVAAELGGPEILVNAAGARLTEERAESEPIDAINRTLALNLVAPLRLSQAVFPHMKAAGRGSVVNISSISGIVGVPGI PQASYAASKAGLSGLTSELAVQWARHEIRVNTIAPGFFRSEITDSLYDTESGQNWLRRNTPLPGDGRVEDFLGAVLWLVS DAGRYVTGQTIAVDGGWTAR
Sequences:
>Translated_260_residues MTAVPDQFGLFDLFALKDRVAVVTGASSGLGAGIARALATAGARVAVVARRRDRLLALAEELGGLAVGADLLDPEQVDAV VPQVAAELGGPEILVNAAGARLTEERAESEPIDAINRTLALNLVAPLRLSQAVFPHMKAAGRGSVVNISSISGIVGVPGI PQASYAASKAGLSGLTSELAVQWARHEIRVNTIAPGFFRSEITDSLYDTESGQNWLRRNTPLPGDGRVEDFLGAVLWLVS DAGRYVTGQTIAVDGGWTAR >Mature_259_residues TAVPDQFGLFDLFALKDRVAVVTGASSGLGAGIARALATAGARVAVVARRRDRLLALAEELGGLAVGADLLDPEQVDAVV PQVAAELGGPEILVNAAGARLTEERAESEPIDAINRTLALNLVAPLRLSQAVFPHMKAAGRGSVVNISSISGIVGVPGIP QASYAASKAGLSGLTSELAVQWARHEIRVNTIAPGFFRSEITDSLYDTESGQNWLRRNTPLPGDGRVEDFLGAVLWLVSD AGRYVTGQTIAVDGGWTAR
Specific function: Involved in the non-phosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate. Dependent on NADP, almost inactive with NAD [H]
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI40254992, Length=242, Percent_Identity=34.7107438016529, Blast_Score=121, Evalue=5e-28, Organism=Homo sapiens, GI32483357, Length=258, Percent_Identity=33.3333333333333, Blast_Score=111, Evalue=5e-25, Organism=Homo sapiens, GI5031737, Length=252, Percent_Identity=33.3333333333333, Blast_Score=105, Evalue=4e-23, Organism=Homo sapiens, GI19923817, Length=258, Percent_Identity=29.4573643410853, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI7705925, Length=252, Percent_Identity=32.9365079365079, Blast_Score=95, Evalue=5e-20, Organism=Homo sapiens, GI15277342, Length=254, Percent_Identity=31.8897637795276, Blast_Score=95, Evalue=7e-20, Organism=Homo sapiens, GI10190704, Length=264, Percent_Identity=30.3030303030303, Blast_Score=88, Evalue=7e-18, Organism=Homo sapiens, GI20149619, Length=249, Percent_Identity=28.9156626506024, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI157739938, Length=196, Percent_Identity=29.0816326530612, Blast_Score=85, Evalue=7e-17, Organism=Homo sapiens, GI126723750, Length=254, Percent_Identity=28.740157480315, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI7706318, Length=202, Percent_Identity=31.1881188118812, Blast_Score=82, Evalue=3e-16, Organism=Homo sapiens, GI33667109, Length=196, Percent_Identity=33.6734693877551, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI4503817, Length=192, Percent_Identity=30.7291666666667, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI31542939, Length=205, Percent_Identity=30.7317073170732, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI4758504, Length=255, Percent_Identity=28.2352941176471, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI66933014, Length=255, Percent_Identity=28.2352941176471, Blast_Score=75, Evalue=7e-14, Organism=Homo sapiens, GI4504505, Length=191, Percent_Identity=34.0314136125654, Blast_Score=75, Evalue=9e-14, Organism=Homo sapiens, GI59889578, Length=227, Percent_Identity=27.3127753303965, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI126723191, Length=191, Percent_Identity=34.0314136125654, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI4503301, Length=263, Percent_Identity=27.3764258555133, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI7657478, Length=186, Percent_Identity=34.4086021505376, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI109715829, Length=206, Percent_Identity=28.1553398058252, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI32455239, Length=182, Percent_Identity=27.4725274725275, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI5031765, Length=182, Percent_Identity=27.4725274725275, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI1789208, Length=253, Percent_Identity=36.7588932806324, Blast_Score=133, Evalue=1e-32, Organism=Escherichia coli, GI1790717, Length=250, Percent_Identity=34, Blast_Score=130, Evalue=1e-31, Organism=Escherichia coli, GI1787335, Length=248, Percent_Identity=35.4838709677419, Blast_Score=122, Evalue=3e-29, Organism=Escherichia coli, GI87082160, Length=264, Percent_Identity=30.3030303030303, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI87082100, Length=259, Percent_Identity=34.3629343629344, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI2367175, Length=247, Percent_Identity=33.6032388663968, Blast_Score=104, Evalue=6e-24, Organism=Escherichia coli, GI1787905, Length=250, Percent_Identity=33.2, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1789378, Length=265, Percent_Identity=30.188679245283, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1789057, Length=257, Percent_Identity=30.3501945525292, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1788459, Length=257, Percent_Identity=28.0155642023346, Blast_Score=77, Evalue=8e-16, Organism=Escherichia coli, GI2367365, Length=246, Percent_Identity=30.8943089430894, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1786812, Length=245, Percent_Identity=27.3469387755102, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI1787820, Length=180, Percent_Identity=28.8888888888889, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1786701, Length=202, Percent_Identity=28.7128712871287, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1787526, Length=252, Percent_Identity=29.3650793650794, Blast_Score=62, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17560676, Length=251, Percent_Identity=31.8725099601594, Blast_Score=113, Evalue=8e-26, Organism=Caenorhabditis elegans, GI17555706, Length=250, Percent_Identity=34, Blast_Score=109, Evalue=2e-24, Organism=Caenorhabditis elegans, GI25147288, Length=256, Percent_Identity=33.203125, Blast_Score=109, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17562910, Length=262, Percent_Identity=30.5343511450382, Blast_Score=103, Evalue=7e-23, Organism=Caenorhabditis elegans, GI17538480, Length=260, Percent_Identity=29.6153846153846, Blast_Score=103, Evalue=8e-23, Organism=Caenorhabditis elegans, GI17560150, Length=258, Percent_Identity=28.6821705426357, Blast_Score=101, Evalue=4e-22, Organism=Caenorhabditis elegans, GI17538182, Length=255, Percent_Identity=32.156862745098, Blast_Score=101, Evalue=4e-22, Organism=Caenorhabditis elegans, GI17559104, Length=264, Percent_Identity=28.4090909090909, Blast_Score=100, Evalue=6e-22, Organism=Caenorhabditis elegans, GI17562904, Length=267, Percent_Identity=28.4644194756554, Blast_Score=100, Evalue=6e-22, Organism=Caenorhabditis elegans, GI115534694, Length=256, Percent_Identity=31.640625, Blast_Score=100, Evalue=7e-22, Organism=Caenorhabditis elegans, GI17560332, Length=266, Percent_Identity=30.0751879699248, Blast_Score=100, Evalue=9e-22, Organism=Caenorhabditis elegans, GI17562990, Length=260, Percent_Identity=29.2307692307692, Blast_Score=96, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17538486, Length=264, Percent_Identity=29.5454545454545, Blast_Score=94, Evalue=6e-20, Organism=Caenorhabditis elegans, GI17551412, Length=264, Percent_Identity=29.5454545454545, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17561402, Length=253, Percent_Identity=29.6442687747036, Blast_Score=91, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17508651, Length=257, Percent_Identity=29.1828793774319, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17531453, Length=258, Percent_Identity=28.6821705426357, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17562906, Length=264, Percent_Identity=28.4090909090909, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI71994600, Length=250, Percent_Identity=29.2, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17565030, Length=267, Percent_Identity=29.5880149812734, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17544670, Length=260, Percent_Identity=26.9230769230769, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17563726, Length=259, Percent_Identity=27.4131274131274, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17560220, Length=272, Percent_Identity=26.1029411764706, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17562908, Length=260, Percent_Identity=27.3076923076923, Blast_Score=84, Evalue=8e-17, Organism=Caenorhabditis elegans, GI17536025, Length=255, Percent_Identity=29.8039215686275, Blast_Score=84, Evalue=8e-17, Organism=Caenorhabditis elegans, GI72000259, Length=259, Percent_Identity=27.4131274131274, Blast_Score=84, Evalue=8e-17, Organism=Caenorhabditis elegans, GI71994604, Length=251, Percent_Identity=28.2868525896414, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI193204405, Length=261, Percent_Identity=26.8199233716475, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17561272, Length=260, Percent_Identity=30.3846153846154, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI193203117, Length=195, Percent_Identity=25.6410256410256, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI193203115, Length=195, Percent_Identity=25.6410256410256, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17568967, Length=189, Percent_Identity=29.6296296296296, Blast_Score=66, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=212, Percent_Identity=31.6037735849057, Blast_Score=92, Evalue=1e-19, Organism=Saccharomyces cerevisiae, GI6324126, Length=262, Percent_Identity=27.0992366412214, Blast_Score=81, Evalue=2e-16, Organism=Saccharomyces cerevisiae, GI6323882, Length=222, Percent_Identity=29.2792792792793, Blast_Score=80, Evalue=3e-16, Organism=Drosophila melanogaster, GI21357041, Length=255, Percent_Identity=32.5490196078431, Blast_Score=110, Evalue=1e-24, Organism=Drosophila melanogaster, GI23397609, Length=248, Percent_Identity=34.6774193548387, Blast_Score=108, Evalue=4e-24, Organism=Drosophila melanogaster, GI28571526, Length=257, Percent_Identity=30.3501945525292, Blast_Score=103, Evalue=1e-22, Organism=Drosophila melanogaster, GI21355319, Length=257, Percent_Identity=31.1284046692607, Blast_Score=100, Evalue=1e-21, Organism=Drosophila melanogaster, GI116007236, Length=198, Percent_Identity=36.3636363636364, Blast_Score=91, Evalue=9e-19, Organism=Drosophila melanogaster, GI24644339, Length=251, Percent_Identity=28.2868525896414, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI24663911, Length=236, Percent_Identity=31.3559322033898, Blast_Score=88, Evalue=5e-18, Organism=Drosophila melanogaster, GI21358495, Length=197, Percent_Identity=29.4416243654822, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI116007238, Length=182, Percent_Identity=36.2637362637363, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI24643142, Length=247, Percent_Identity=28.3400809716599, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI24639444, Length=249, Percent_Identity=31.3253012048193, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI116007234, Length=205, Percent_Identity=34.6341463414634, Blast_Score=81, Evalue=7e-16, Organism=Drosophila melanogaster, GI161076933, Length=182, Percent_Identity=30.2197802197802, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI24584748, Length=182, Percent_Identity=30.2197802197802, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI24584744, Length=188, Percent_Identity=29.7872340425532, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI28574402, Length=188, Percent_Identity=29.7872340425532, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI28571387, Length=201, Percent_Identity=31.3432835820896, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI18859837, Length=189, Percent_Identity=33.8624338624339, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI116007232, Length=185, Percent_Identity=35.1351351351351, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI281364494, Length=199, Percent_Identity=29.6482412060301, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI17737361, Length=255, Percent_Identity=27.843137254902, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24644337, Length=250, Percent_Identity=28, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24649181, Length=192, Percent_Identity=28.6458333333333, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI24641388, Length=204, Percent_Identity=29.9019607843137, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24648944, Length=204, Percent_Identity=29.4117647058824, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24584752, Length=206, Percent_Identity=31.5533980582524, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI281364892, Length=186, Percent_Identity=26.8817204301075, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI24640442, Length=193, Percent_Identity=23.8341968911917, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24580925, Length=205, Percent_Identity=28.780487804878, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI21355631, Length=213, Percent_Identity=29.5774647887324, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI221331218, Length=193, Percent_Identity=28.4974093264249, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24665243, Length=193, Percent_Identity=28.4974093264249, Blast_Score=65, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.69 [H]
Molecular weight: Translated: 27101; Mature: 26970
Theoretical pI: Translated: 4.93; Mature: 4.93
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 0.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAVPDQFGLFDLFALKDRVAVVTGASSGLGAGIARALATAGARVAVVARRRDRLLALAE CCCCCCCCCHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHH ELGGLAVGADLLDPEQVDAVVPQVAAELGGPEILVNAAGARLTEERAESEPIDAINRTLA HHCCEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHCCCCHHHHHHHHH LNLVAPLRLSQAVFPHMKAAGRGSVVNISSISGIVGVPGIPQASYAASKAGLSGLTSELA HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH VQWARHEIRVNTIAPGFFRSEITDSLYDTESGQNWLRRNTPLPGDGRVEDFLGAVLWLVS HHHHHHEEEEEEECCCHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHH DAGRYVTGQTIAVDGGWTAR CCCCEEECCEEEECCCCCCC >Mature Secondary Structure TAVPDQFGLFDLFALKDRVAVVTGASSGLGAGIARALATAGARVAVVARRRDRLLALAE CCCCCCCCHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHH ELGGLAVGADLLDPEQVDAVVPQVAAELGGPEILVNAAGARLTEERAESEPIDAINRTLA HHCCEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHCCCCHHHHHHHHH LNLVAPLRLSQAVFPHMKAAGRGSVVNISSISGIVGVPGIPQASYAASKAGLSGLTSELA HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH VQWARHEIRVNTIAPGFFRSEITDSLYDTESGQNWLRRNTPLPGDGRVEDFLGAVLWLVS HHHHHHEEEEEEECCCHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHH DAGRYVTGQTIAVDGGWTAR CCCCEEECCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7751271 [H]