| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158318578
Identifier: 158318578
GI number: 158318578
Start: 8345936
End: 8347141
Strand: Reverse
Name: 158318578
Synonym: Franean1_6846
Alternate gene names: NA
Gene position: 8347141-8345936 (Counterclockwise)
Preceding gene: 158318579
Following gene: 158318577
Centisome position: 92.93
GC content: 66.0
Gene sequence:
>1206_bases GTGTCGTTCAGCTGGTTCATTTCGGTCGACGACCACCTCATCGAGCCGGCGCGGCTGTGGCAGGAGCGCCTGCCACAGCG CTGGCGCGACACCGGGCCCCGCATCGTGCGGGACGGGAAGTCGGAGTTCTGGGTCTACGAGGACCGCCAGATCGTCACCA CCGGCCTGAACGCCGTGGCGGGCAAGACCCGCGAGGAGTTCTCGCCGGAGCCGATCTCGTACGACGACATGCGCCCCGGC TGCTACGAGCCCGCGGCCCGGGTGGCCGACATGAACCAGGGCAACGTGCTGTCGTCGATCCTGTTCCCGTCGTTCCCGCG GTACTGCGGCCAGGTCTTCCACGAGGCCAAGGACAAGGAGCTCGGGCTGCTCTGCGTCCAGGCGTGGAACGACTTCATCC TGGAGGAGTTCGGCGCGGCCTACCCCGGCCGCTTCATCCCCATGATGATCATTCCGTTGTGGGACCCGGTGGCAGCGGCG GCCGAGATCCGGCGGACGGCGGCCCGCGGCGGCCGGTCGATCGCCTTCTCGGAGAACCCGACCAAGCTCGGTCTCCCGTC GATCCACACCGACTTCTGGGAGCCGATGTTCGAGGCCTGCAACGAGACCGGCTACGTGATCTCGATGCACGTCGGGTCGT CGTCCAACCTGATCCGCACCTCGCCGGACATGCCGACGCTGGCCTTCATGGCCTACTCGGCGGCGGCGAACCAGGCCGGC ACGTTGCTGGACTGGCTGTTCAGTGGCATTTTCGACCGGTTCCCGAACCTCAAGATCGCTCTTTCCGAGGGCTCGATCGG CTGGATTCCGTACTTCCTGGAGCGGGCTGAGCAGGTCATCGACAAGCAGCGGTTCTGGGCGTCGCGGTTCGATATCGACA TGAACGCCTCCCACGAGCGCGGTGAGGCCAAGGGCGAGGCGAAGTTCAACCTCGACACCAACATTCGCCAGCTCTTCGCC GACCACGTTTTCGGCACCTTCATCGAGGACCAGGCCGGCGTCCGCCTGCTCGACATCATCGGTGAGGACAATGTGATGCT CGAGTGCGACTACCCGCACTCGGACTCCACCTGGCCGGACACCGTGAAGCTGGCCGGCGGCTGGCTCGGGCACCTTTCCG ACGAGGTCCAGCACAAGATCACGATCGGGAACGCGGCCCGCGTCTACAACTTCACGCCTGCTGACCCGGCGACCATCACG CTGTGA
Upstream 100 bases:
>100_bases TTCGTCGACCAGCCCGGCGGTTTCACTGGTGCTCCGGCTGCGCGCTGAGCTACCATATACGTGAGCGTTCGCTTTCTTGC GCCGAAGTCAGGGAGGACTT
Downstream 100 bases:
>100_bases GCTCGGTCGGCGTCTCCCGGACGGGAGTCGCCGGCTGGCGGCACCGGCAGGAATCATCACGACCGCGGCCTCGTTCCGGT CACGGGATTCAGCACCCGCG
Product: amidohydrolase 2
Products: NA
Alternate protein names: Amidase; Amidohydrolase Family Protein; Barh Protein; TIM-Barrel Fold Metal-Dependent Hydrolase; Metal-Dependent Amidohydrolase; Amidohydrolase 2 Protein; Hydrolase; Aminocarboxymuconate-Semialdehyde Decarboxylase; Amidohydrolase Family; Minocarboxymuconate-Semialdehyde Decarboxylase.
Number of amino acids: Translated: 401; Mature: 400
Protein sequence:
>401_residues MSFSWFISVDDHLIEPARLWQERLPQRWRDTGPRIVRDGKSEFWVYEDRQIVTTGLNAVAGKTREEFSPEPISYDDMRPG CYEPAARVADMNQGNVLSSILFPSFPRYCGQVFHEAKDKELGLLCVQAWNDFILEEFGAAYPGRFIPMMIIPLWDPVAAA AEIRRTAARGGRSIAFSENPTKLGLPSIHTDFWEPMFEACNETGYVISMHVGSSSNLIRTSPDMPTLAFMAYSAAANQAG TLLDWLFSGIFDRFPNLKIALSEGSIGWIPYFLERAEQVIDKQRFWASRFDIDMNASHERGEAKGEAKFNLDTNIRQLFA DHVFGTFIEDQAGVRLLDIIGEDNVMLECDYPHSDSTWPDTVKLAGGWLGHLSDEVQHKITIGNAARVYNFTPADPATIT L
Sequences:
>Translated_401_residues MSFSWFISVDDHLIEPARLWQERLPQRWRDTGPRIVRDGKSEFWVYEDRQIVTTGLNAVAGKTREEFSPEPISYDDMRPG CYEPAARVADMNQGNVLSSILFPSFPRYCGQVFHEAKDKELGLLCVQAWNDFILEEFGAAYPGRFIPMMIIPLWDPVAAA AEIRRTAARGGRSIAFSENPTKLGLPSIHTDFWEPMFEACNETGYVISMHVGSSSNLIRTSPDMPTLAFMAYSAAANQAG TLLDWLFSGIFDRFPNLKIALSEGSIGWIPYFLERAEQVIDKQRFWASRFDIDMNASHERGEAKGEAKFNLDTNIRQLFA DHVFGTFIEDQAGVRLLDIIGEDNVMLECDYPHSDSTWPDTVKLAGGWLGHLSDEVQHKITIGNAARVYNFTPADPATIT L >Mature_400_residues SFSWFISVDDHLIEPARLWQERLPQRWRDTGPRIVRDGKSEFWVYEDRQIVTTGLNAVAGKTREEFSPEPISYDDMRPGC YEPAARVADMNQGNVLSSILFPSFPRYCGQVFHEAKDKELGLLCVQAWNDFILEEFGAAYPGRFIPMMIIPLWDPVAAAA EIRRTAARGGRSIAFSENPTKLGLPSIHTDFWEPMFEACNETGYVISMHVGSSSNLIRTSPDMPTLAFMAYSAAANQAGT LLDWLFSGIFDRFPNLKIALSEGSIGWIPYFLERAEQVIDKQRFWASRFDIDMNASHERGEAKGEAKFNLDTNIRQLFAD HVFGTFIEDQAGVRLLDIIGEDNVMLECDYPHSDSTWPDTVKLAGGWLGHLSDEVQHKITIGNAARVYNFTPADPATITL
Specific function: Unknown
COG id: COG2159
COG function: function code R; Predicted metal-dependent hydrolase of the TIM-barrel fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45219; Mature: 45088
Theoretical pI: Translated: 4.66; Mature: 4.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFSWFISVDDHLIEPARLWQERLPQRWRDTGPRIVRDGKSEFWVYEDRQIVTTGLNAVA CCEEEEEECCHHHCCHHHHHHHHCCHHHHCCCCCEEECCCCCEEEEECCEEEECCCHHHH GKTREEFSPEPISYDDMRPGCYEPAARVADMNQGNVLSSILFPSFPRYCGQVFHEAKDKE CCCHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCC LGLLCVQAWNDFILEEFGAAYPGRFIPMMIIPLWDPVAAAAEIRRTAARGGRSIAFSENP CCEEEHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCC TKLGLPSIHTDFWEPMFEACNETGYVISMHVGSSSNLIRTSPDMPTLAFMAYSAAANQAG CCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEECCCCCHHHHHHHHHHCCCCH TLLDWLFSGIFDRFPNLKIALSEGSIGWIPYFLERAEQVIDKQRFWASRFDIDMNASHER HHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC GEAKGEAKFNLDTNIRQLFADHVFGTFIEDQAGVRLLDIIGEDNVMLECDYPHSDSTWPD CCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCCC TVKLAGGWLGHLSDEVQHKITIGNAARVYNFTPADPATITL CEECCCCHHHHHHHHHHEEEEECCCEEEEEECCCCCCEEEC >Mature Secondary Structure SFSWFISVDDHLIEPARLWQERLPQRWRDTGPRIVRDGKSEFWVYEDRQIVTTGLNAVA CEEEEEECCHHHCCHHHHHHHHCCHHHHCCCCCEEECCCCCEEEEECCEEEECCCHHHH GKTREEFSPEPISYDDMRPGCYEPAARVADMNQGNVLSSILFPSFPRYCGQVFHEAKDKE CCCHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCC LGLLCVQAWNDFILEEFGAAYPGRFIPMMIIPLWDPVAAAAEIRRTAARGGRSIAFSENP CCEEEHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCC TKLGLPSIHTDFWEPMFEACNETGYVISMHVGSSSNLIRTSPDMPTLAFMAYSAAANQAG CCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEECCCCCHHHHHHHHHHCCCCH TLLDWLFSGIFDRFPNLKIALSEGSIGWIPYFLERAEQVIDKQRFWASRFDIDMNASHER HHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC GEAKGEAKFNLDTNIRQLFADHVFGTFIEDQAGVRLLDIIGEDNVMLECDYPHSDSTWPD CCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCCC TVKLAGGWLGHLSDEVQHKITIGNAARVYNFTPADPATITL CEECCCCHHHHHHHHHHEEEEECCCEEEEEECCCCCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA