Click here to switch to the map view.

The map label for this gene is smf [C]

Identifier: 158318473

GI number: 158318473

Start: 8199843

End: 8200694

Strand: Reverse

Name: smf [C]

Synonym: Franean1_6741

Alternate gene names: 158318473

Gene position: 8200694-8199843 (Counterclockwise)

Preceding gene: 158318474

Following gene: 158318472

Centisome position: 91.3

GC content: 76.64

Gene sequence:

>852_bases
ATGACTGACCCTGTGAATGCCGACCGGCGTGCCCGCGCCGCGCTGACCTGCCTACCGCCCGACCGTCACCGCACCCAACG
CATCCACCGCCACGGCCCCATCACCGTCTGGGAGAGGATCGCCGGCCGCTACCCCGACATCGACCCGGGCCGTCTCCTGG
AGCAGGCCACCGAGAGCGGCTGGCGGCTGGTCATCCCCGGCGACCCCGACTGGCCCGCCACCCTCGACGTTCCCGGCCGG
CCGCTGGGCCTGTGGGTGCACGGCGCCGGGGACCTCCCCGGGCTGCTGCGTCGGGCGGTGACCCTCACCGGCGCCCTCGC
GGGAAGCGCCTACGGGCGCACGGTCGCCGCCGACCTCGCCACCAAGCTGACCACGCAGCCCGGTGGGGAGTCGGTCACGG
TCGTCGCCCACGGCGGCGGGAACGGCACCGACGTCGCCGCCCTGACCGCCGCCGCCCGCCGGCCGGCGGCGGTCGCGGTC
CTCGACACCCCCACCGATCTGTTCGGCCAGCCCGACCTGCTTCGTACGGTCGCCGCCGGGGGGCTACTCGTCAGCGCCGC
CGCGCCCGACGCAAACCCCACTCCCGGCCATGTGCTGGCCCGCATCGAGCTGCTCGCCGCTCTCGCTCACGCCACCGTCC
TCATCGAGGCCCGCGCCAGCGACGACGACGCGCTTTCCGTCGCCTACACCGCCCACTTCCGGCGCCGCCGGCCGGTCCTG
GCTGTCCCCGGCCCGATCACCGCCCTGGCCAGCGCCGGCCCGCACGCCCTCCTCCGCGACGGCACCGCCCGCTGCGTCAC
CACCGCCGGCCACATCACCGCGCACCTCCCCGACCCGCCCGCCCCCCGCTAA

Upstream 100 bases:

>100_bases
ACGGCCGGGGACACGCACTCACCCCCGGCCTCGCTCCACGCATGCCACGCCCCCTACCAGGCACGCCCGACGACTCGAAC
CTGACCAGGAAGAGCTCGCG

Downstream 100 bases:

>100_bases
CCCCCGGCCAGCACCGCCCCCGGGCCCGCACGCCCGGGGCGGCCCCACCGAGACAAGGCCCTGTCTGATGCCTGTGATCC
TCAGCGAGCGGGAGCGGCGC

Product: putative DNA processing smf-family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MTDPVNADRRARAALTCLPPDRHRTQRIHRHGPITVWERIAGRYPDIDPGRLLEQATESGWRLVIPGDPDWPATLDVPGR
PLGLWVHGAGDLPGLLRRAVTLTGALAGSAYGRTVAADLATKLTTQPGGESVTVVAHGGGNGTDVAALTAAARRPAAVAV
LDTPTDLFGQPDLLRTVAAGGLLVSAAAPDANPTPGHVLARIELLAALAHATVLIEARASDDDALSVAYTAHFRRRRPVL
AVPGPITALASAGPHALLRDGTARCVTTAGHITAHLPDPPAPR

Sequences:

>Translated_283_residues
MTDPVNADRRARAALTCLPPDRHRTQRIHRHGPITVWERIAGRYPDIDPGRLLEQATESGWRLVIPGDPDWPATLDVPGR
PLGLWVHGAGDLPGLLRRAVTLTGALAGSAYGRTVAADLATKLTTQPGGESVTVVAHGGGNGTDVAALTAAARRPAAVAV
LDTPTDLFGQPDLLRTVAAGGLLVSAAAPDANPTPGHVLARIELLAALAHATVLIEARASDDDALSVAYTAHFRRRRPVL
AVPGPITALASAGPHALLRDGTARCVTTAGHITAHLPDPPAPR
>Mature_282_residues
TDPVNADRRARAALTCLPPDRHRTQRIHRHGPITVWERIAGRYPDIDPGRLLEQATESGWRLVIPGDPDWPATLDVPGRP
LGLWVHGAGDLPGLLRRAVTLTGALAGSAYGRTVAADLATKLTTQPGGESVTVVAHGGGNGTDVAALTAAARRPAAVAVL
DTPTDLFGQPDLLRTVAAGGLLVSAAAPDANPTPGHVLARIELLAALAHATVLIEARASDDDALSVAYTAHFRRRRPVLA
VPGPITALASAGPHALLRDGTARCVTTAGHITAHLPDPPAPR

Specific function: Unknown

COG id: COG0758

COG function: function code LU; Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003488
- InterPro:   IPR011991 [H]

Pfam domain/function: PF02481 DNA_processg_A [H]

EC number: NA

Molecular weight: Translated: 29388; Mature: 29257

Theoretical pI: Translated: 8.78; Mature: 8.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDPVNADRRARAALTCLPPDRHRTQRIHRHGPITVWERIAGRYPDIDPGRLLEQATESG
CCCCCCCCCHHCEEEEECCCCHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHCC
WRLVIPGDPDWPATLDVPGRPLGLWVHGAGDLPGLLRRAVTLTGALAGSAYGRTVAADLA
CEEEECCCCCCCEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHH
TKLTTQPGGESVTVVAHGGGNGTDVAALTAAARRPAAVAVLDTPTDLFGQPDLLRTVAAG
HHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCEEEEEEECCHHHCCCCHHHHHHHCC
GLLVSAAAPDANPTPGHVLARIELLAALAHATVLIEARASDDDALSVAYTAHFRRRRPVL
CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHEEEEEECCCCCCCEEEEEEHHHHHCCCEE
AVPGPITALASAGPHALLRDGTARCVTTAGHITAHLPDPPAPR
ECCCCHHHHHCCCCHHHHHCCCCEEEEECCEEEEECCCCCCCC
>Mature Secondary Structure 
TDPVNADRRARAALTCLPPDRHRTQRIHRHGPITVWERIAGRYPDIDPGRLLEQATESG
CCCCCCCCHHCEEEEECCCCHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHCC
WRLVIPGDPDWPATLDVPGRPLGLWVHGAGDLPGLLRRAVTLTGALAGSAYGRTVAADLA
CEEEECCCCCCCEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHH
TKLTTQPGGESVTVVAHGGGNGTDVAALTAAARRPAAVAVLDTPTDLFGQPDLLRTVAAG
HHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCEEEEEEECCHHHCCCCHHHHHHHCC
GLLVSAAAPDANPTPGHVLARIELLAALAHATVLIEARASDDDALSVAYTAHFRRRRPVL
CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHEEEEEECCCCCCCEEEEEEHHHHHCCCEE
AVPGPITALASAGPHALLRDGTARCVTTAGHITAHLPDPPAPR
ECCCCHHHHHCCCCHHHHHCCCCEEEEECCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]