| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158318469
Identifier: 158318469
GI number: 158318469
Start: 8194654
End: 8196183
Strand: Direct
Name: 158318469
Synonym: Franean1_6737
Alternate gene names: NA
Gene position: 8194654-8196183 (Clockwise)
Preceding gene: 158318467
Following gene: 158318470
Centisome position: 91.23
GC content: 68.95
Gene sequence:
>1530_bases TTGCGGTTGTGGGCCCGTGTTCGAGGGCCGGGTGGGGCCTGTCCAGGCTGCGGGGTGGTCTCGGAGCGGGTGCATGGCCG GTATCGGCGGCGGTTGGTCGATGCTGCCATCGGGGGTACCCACGTCGAGATCGATCTGCTGGTCCGGCGGTTCCGTTGCC TGGACTCGGGATGTTCGAGGGTGACGTTCGCGGAGCAGGTCGTGGGTCTGACGAGTCCACATGCCCGGTTCACCCCACTC GCCACCGGGATGATCGAGGCGATCGGGTTGGCGCTGGCGGGCAGGGCCGGTTCGCGTCTCGCCGGGCGGGTGGGGCTGTG TGCTGGCCGGAACACGGTGCTGCGTCGGGTGCGGGCGTTACCCGATCCGCAGGTGGGTGTCGTGGCGACCCTCGGTGTGG ACGATTTCGCGGTGCGTCGGGGCCGGGTCTACGGAACGGTCCTGGTCGATCTGGACCGTCACCGGCCGGTGGACCTGCTC GCGGATCGGGAGGCAGCGACGTTCGCCGGCTGGCTGGCCGAGCATCCCGGTGCGCAGGTGATCTGCCGGGATCGGGCCGG TGCCTACGCCGACGGTGCCCGTACCGGTGCACCGGACGCGGTGGAAGTGGCTGACAGGTGGCATCTGTGGCACAACCTCG CCGGGCACGTCGAGGCGACTGTCGCCCGCCATCGTTCCTGCCTGAAAGAACCCTCCCTGCCGGCCGTCGAGGCCGTCGCG AGCCAGCCGAGCGACGTCGACGAGGCGGTAACCGAGGCGCGGGACGAGCACTTCGAGAGCCGGGCGTTCGTGCGCAACGC CCGCGAGCGGTATGCCGCCGTCCAGGACCTCAAAGCGCAGGGCCTGGGCATCAAGCCGATCATGCGGGAGCTGGGGCTGG CGAAGGAAACGGTCCGCAAGTACTACCGCGCGGCCACCATCGAGGACGTCCTGGCCAAGACCCGCGACGGACGCGGCTCG GTCCTACGGCGGTGGGAGCCCTACCTCAACGAGCGGGTGAATGCTGGGATCACCAATGGCAGCCAGCTGTTTCGGGAGAT CCGCGAGCAGGGCTACCCCGGAAGCCAGGCCACCGTCCTGGCTTACCTCCGCCTGCTGCGCACCGCCGGCAGCACCGCAC CCGCAGCGTCGCCGGCGCCGAAGGTCCGCACCGTGACCCGGTGGGTCCTCACCGATCCCGAACACCTCGACGAGGAGGAA ACCCTCGCGTTGAAGAAGGTTCTCACCCGCTGCCAGCACCTGCAGACCCTCGCGGGCCATGTCACCGCGTTCGCGCAGAT GCTCACCGGACGCCACGGCGACCGGCTCAACACCTGGATCGCCGCCGTCGACGCCGACGACCTCCCTGAACTGCACCGTT TCACCCGCGGCCTGCTCCGCGACCACGACGCCGTCCTCAACGGACTGACCCTGCCGCACAGCTCCGGACAAGTTGAAGGC ACCGTGAACCGCATCAAAATGATCAAACGTCAGATGTACGGCAGAGCGAACTTCGACCTCCTCCGCAAACGCGTCCTGCT CGCGACCTGA
Upstream 100 bases:
>100_bases CCTGCTGTGATCATGTGCCGGGTGCCTCTCTGACCTTGGGGTCCTGCTTCCGCATCTGGCGGGTCTGATCGTCGACCGCG TCGACCGGACTGGTGATCGC
Downstream 100 bases:
>100_bases CCGCCGCCCGGGTCCACTTCGATCACAAGATCAGGGCCAGATCCACTTGAATCCCGTAGAGCCACCGTGTCCTGATCCAG CTACGCGACGCCGACGGCCA
Product: transposase IS204/IS1001/IS1096/IS1165 family protein
Products: NA
Alternate protein names: IS6 Family Transposase; ISL3 Family Transposase; LOW QUALITY PROTEIN Transposase; IS Transposase; Insertion Element; Transposase For Insertion Sequence Element; Transposase Of ISMdi2 ISL3 Family; ISL3 Family ISFsp1-Like Transposase; Transposase Of
Number of amino acids: Translated: 509; Mature: 509
Protein sequence:
>509_residues MRLWARVRGPGGACPGCGVVSERVHGRYRRRLVDAAIGGTHVEIDLLVRRFRCLDSGCSRVTFAEQVVGLTSPHARFTPL ATGMIEAIGLALAGRAGSRLAGRVGLCAGRNTVLRRVRALPDPQVGVVATLGVDDFAVRRGRVYGTVLVDLDRHRPVDLL ADREAATFAGWLAEHPGAQVICRDRAGAYADGARTGAPDAVEVADRWHLWHNLAGHVEATVARHRSCLKEPSLPAVEAVA SQPSDVDEAVTEARDEHFESRAFVRNARERYAAVQDLKAQGLGIKPIMRELGLAKETVRKYYRAATIEDVLAKTRDGRGS VLRRWEPYLNERVNAGITNGSQLFREIREQGYPGSQATVLAYLRLLRTAGSTAPAASPAPKVRTVTRWVLTDPEHLDEEE TLALKKVLTRCQHLQTLAGHVTAFAQMLTGRHGDRLNTWIAAVDADDLPELHRFTRGLLRDHDAVLNGLTLPHSSGQVEG TVNRIKMIKRQMYGRANFDLLRKRVLLAT
Sequences:
>Translated_509_residues MRLWARVRGPGGACPGCGVVSERVHGRYRRRLVDAAIGGTHVEIDLLVRRFRCLDSGCSRVTFAEQVVGLTSPHARFTPL ATGMIEAIGLALAGRAGSRLAGRVGLCAGRNTVLRRVRALPDPQVGVVATLGVDDFAVRRGRVYGTVLVDLDRHRPVDLL ADREAATFAGWLAEHPGAQVICRDRAGAYADGARTGAPDAVEVADRWHLWHNLAGHVEATVARHRSCLKEPSLPAVEAVA SQPSDVDEAVTEARDEHFESRAFVRNARERYAAVQDLKAQGLGIKPIMRELGLAKETVRKYYRAATIEDVLAKTRDGRGS VLRRWEPYLNERVNAGITNGSQLFREIREQGYPGSQATVLAYLRLLRTAGSTAPAASPAPKVRTVTRWVLTDPEHLDEEE TLALKKVLTRCQHLQTLAGHVTAFAQMLTGRHGDRLNTWIAAVDADDLPELHRFTRGLLRDHDAVLNGLTLPHSSGQVEG TVNRIKMIKRQMYGRANFDLLRKRVLLAT >Mature_509_residues MRLWARVRGPGGACPGCGVVSERVHGRYRRRLVDAAIGGTHVEIDLLVRRFRCLDSGCSRVTFAEQVVGLTSPHARFTPL ATGMIEAIGLALAGRAGSRLAGRVGLCAGRNTVLRRVRALPDPQVGVVATLGVDDFAVRRGRVYGTVLVDLDRHRPVDLL ADREAATFAGWLAEHPGAQVICRDRAGAYADGARTGAPDAVEVADRWHLWHNLAGHVEATVARHRSCLKEPSLPAVEAVA SQPSDVDEAVTEARDEHFESRAFVRNARERYAAVQDLKAQGLGIKPIMRELGLAKETVRKYYRAATIEDVLAKTRDGRGS VLRRWEPYLNERVNAGITNGSQLFREIREQGYPGSQATVLAYLRLLRTAGSTAPAASPAPKVRTVTRWVLTDPEHLDEEE TLALKKVLTRCQHLQTLAGHVTAFAQMLTGRHGDRLNTWIAAVDADDLPELHRFTRGLLRDHDAVLNGLTLPHSSGQVEG TVNRIKMIKRQMYGRANFDLLRKRVLLAT
Specific function: Unknown
COG id: COG3464
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55951; Mature: 55951
Theoretical pI: Translated: 10.19; Mature: 10.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLWARVRGPGGACPGCGVVSERVHGRYRRRLVDAAIGGTHVEIDLLVRRFRCLDSGCSR CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHCCCCH VTFAEQVVGLTSPHARFTPLATGMIEAIGLALAGRAGSRLAGRVGLCAGRNTVLRRVRAL HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHCC PDPQVGVVATLGVDDFAVRRGRVYGTVLVDLDRHRPVDLLADREAATFAGWLAEHPGAQV CCCCCCEEEEECCCHHHHHCCCEEEEEEEEECCCCCHHHHCCCCHHHHHHHHHHCCCCEE ICRDRAGAYADGARTGAPDAVEVADRWHLWHNLAGHVEATVARHRSCLKEPSLPAVEAVA EEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH SQPSDVDEAVTEARDEHFESRAFVRNARERYAAVQDLKAQGLGIKPIMRELGLAKETVRK CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHH YYRAATIEDVLAKTRDGRGSVLRRWEPYLNERVNAGITNGSQLFREIREQGYPGSQATVL HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHH AYLRLLRTAGSTAPAASPAPKVRTVTRWVLTDPEHLDEEETLALKKVLTRCQHLQTLAGH HHHHHHHHCCCCCCCCCCCCCHHHHHHHEECCHHHCCHHHHHHHHHHHHHHHHHHHHHHH VTAFAQMLTGRHGDRLNTWIAAVDADDLPELHRFTRGLLRDHDAVLNGLTLPHSSGQVEG HHHHHHHHHCCCCCCHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH TVNRIKMIKRQMYGRANFDLLRKRVLLAT HHHHHHHHHHHHCCCCCHHHHHHHHHHCC >Mature Secondary Structure MRLWARVRGPGGACPGCGVVSERVHGRYRRRLVDAAIGGTHVEIDLLVRRFRCLDSGCSR CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHCCCCH VTFAEQVVGLTSPHARFTPLATGMIEAIGLALAGRAGSRLAGRVGLCAGRNTVLRRVRAL HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHCC PDPQVGVVATLGVDDFAVRRGRVYGTVLVDLDRHRPVDLLADREAATFAGWLAEHPGAQV CCCCCCEEEEECCCHHHHHCCCEEEEEEEEECCCCCHHHHCCCCHHHHHHHHHHCCCCEE ICRDRAGAYADGARTGAPDAVEVADRWHLWHNLAGHVEATVARHRSCLKEPSLPAVEAVA EEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH SQPSDVDEAVTEARDEHFESRAFVRNARERYAAVQDLKAQGLGIKPIMRELGLAKETVRK CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHH YYRAATIEDVLAKTRDGRGSVLRRWEPYLNERVNAGITNGSQLFREIREQGYPGSQATVL HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHH AYLRLLRTAGSTAPAASPAPKVRTVTRWVLTDPEHLDEEETLALKKVLTRCQHLQTLAGH HHHHHHHHCCCCCCCCCCCCCHHHHHHHEECCHHHCCHHHHHHHHHHHHHHHHHHHHHHH VTAFAQMLTGRHGDRLNTWIAAVDADDLPELHRFTRGLLRDHDAVLNGLTLPHSSGQVEG HHHHHHHHHCCCCCCHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH TVNRIKMIKRQMYGRANFDLLRKRVLLAT HHHHHHHHHHHHCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA