| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is 158318470
Identifier: 158318470
GI number: 158318470
Start: 8196716
End: 8197453
Strand: Direct
Name: 158318470
Synonym: Franean1_6738
Alternate gene names: NA
Gene position: 8196716-8197453 (Clockwise)
Preceding gene: 158318469
Following gene: 158318477
Centisome position: 91.26
GC content: 73.44
Gene sequence:
>738_bases ATGAACCGGCCCCCCGCACACCAGCGCGCCGATCGCGAGACGCCCGCCGGCGAGCAGACACCGCCACCCCAGCAGCCTGC CGAGGACAGGGAACCCCTCGGCGCCGTCAGGGCGGTCGAGCTCCACACCGGTGACCTCTACCGCCACACCAGCCCCCCTT TGGGTGCCGAGGATGACGCCGAGCCGATCCCCGGCCTGTGGATCGTCACCAAGACGTTCGACCTGGCCGCCCTCGACCGC GACGACGAGGACACCCTCCTCCACGCGCACCCCGCCGGCCGGCCCGGCAACGCCAGCGCGCAGTGCGACACCAGCCCCGA GGACGAGGTTGACCTGCTCGCCCGTCTCCTCGACGAGACCACCGACTGCACTGAGAAGTCCTACGCCCTCACCCGGCTGT ACCGGCTGCCCGAAGCCACCGTGCGCGTGCAGGTCCGACGCACCTTCCTAGGCCCGCATCCCGCGGCGACCGTCGACCTG CTCACCTCCGACGGCTGGAGCACACTGATCGACGACCCGGCCAGCCCCTGGCGACCGACCCCACACGGCCTCCACGAGGT CCGCGCCGTGCTCGACCCCCTGGCCACCGGCCTTCTCCTGCGCGCGCACCGTGCCCTGACCGCGTCCTGGCCCGCACCCC ACCCGCAGCCGCGCCCCGCCCGCACTTCGGCGACGGACGAGGCGACACCATCGCCAACGCCCGCATCGCCGCAGGTGGGT GACGAGCGACGCCGGTGA
Upstream 100 bases:
>100_bases CCCGCCCGGCGGGCGCACCCCCCCGGCCCCACCTGTTCCGCCCACATCCTCGGACGGCCCCGAGCCCTACCCCCCGCGAC CCACCCGTGAAGGAGCATCG
Downstream 100 bases:
>100_bases CCGGGCGGCGGCCCCGCCCGGCCCGCCCTGCGGGCGGGGCCGCCGCCGGCCGGGGTCGGTTGGGTGGGACGCCGGTGGCT ACCTGCGCGGCCGAAACGCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 245; Mature: 245
Protein sequence:
>245_residues MNRPPAHQRADRETPAGEQTPPPQQPAEDREPLGAVRAVELHTGDLYRHTSPPLGAEDDAEPIPGLWIVTKTFDLAALDR DDEDTLLHAHPAGRPGNASAQCDTSPEDEVDLLARLLDETTDCTEKSYALTRLYRLPEATVRVQVRRTFLGPHPAATVDL LTSDGWSTLIDDPASPWRPTPHGLHEVRAVLDPLATGLLLRAHRALTASWPAPHPQPRPARTSATDEATPSPTPASPQVG DERRR
Sequences:
>Translated_245_residues MNRPPAHQRADRETPAGEQTPPPQQPAEDREPLGAVRAVELHTGDLYRHTSPPLGAEDDAEPIPGLWIVTKTFDLAALDR DDEDTLLHAHPAGRPGNASAQCDTSPEDEVDLLARLLDETTDCTEKSYALTRLYRLPEATVRVQVRRTFLGPHPAATVDL LTSDGWSTLIDDPASPWRPTPHGLHEVRAVLDPLATGLLLRAHRALTASWPAPHPQPRPARTSATDEATPSPTPASPQVG DERRR >Mature_245_residues MNRPPAHQRADRETPAGEQTPPPQQPAEDREPLGAVRAVELHTGDLYRHTSPPLGAEDDAEPIPGLWIVTKTFDLAALDR DDEDTLLHAHPAGRPGNASAQCDTSPEDEVDLLARLLDETTDCTEKSYALTRLYRLPEATVRVQVRRTFLGPHPAATVDL LTSDGWSTLIDDPASPWRPTPHGLHEVRAVLDPLATGLLLRAHRALTASWPAPHPQPRPARTSATDEATPSPTPASPQVG DERRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26750; Mature: 26750
Theoretical pI: Translated: 5.02; Mature: 5.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRPPAHQRADRETPAGEQTPPPQQPAEDREPLGAVRAVELHTGDLYRHTSPPLGAEDDA CCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHCCCCCCCCCCCCC EPIPGLWIVTKTFDLAALDRDDEDTLLHAHPAGRPGNASAQCDTSPEDEVDLLARLLDET CCCCCEEEEEECCEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH TDCTEKSYALTRLYRLPEATVRVQVRRTFLGPHPAATVDLLTSDGWSTLIDDPASPWRPT HHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCEEEEEECCCCHHHHCCCCCCCCCC PHGLHEVRAVLDPLATGLLLRAHRALTASWPAPHPQPRPARTSATDEATPSPTPASPQVG CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC DERRR CCCCC >Mature Secondary Structure MNRPPAHQRADRETPAGEQTPPPQQPAEDREPLGAVRAVELHTGDLYRHTSPPLGAEDDA CCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHCCCCCCCCCCCCC EPIPGLWIVTKTFDLAALDRDDEDTLLHAHPAGRPGNASAQCDTSPEDEVDLLARLLDET CCCCCEEEEEECCEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH TDCTEKSYALTRLYRLPEATVRVQVRRTFLGPHPAATVDLLTSDGWSTLIDDPASPWRPT HHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCEEEEEECCCCHHHHCCCCCCCCCC PHGLHEVRAVLDPLATGLLLRAHRALTASWPAPHPQPRPARTSATDEATPSPTPASPQVG CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC DERRR CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA