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The map label for this gene is ydcR [C]

Identifier: 158318442

GI number: 158318442

Start: 8151295

End: 8152545

Strand: Direct

Name: ydcR [C]

Synonym: Franean1_6710

Alternate gene names: 158318442

Gene position: 8151295-8152545 (Clockwise)

Preceding gene: 158318441

Following gene: 158318443

Centisome position: 90.75

GC content: 70.18

Gene sequence:

>1251_bases
GTGTCGCGGAGCGTGACTCTCGATCGGTGGCGGGATCGGTACGCCCAGCGTGCCCAGGGGATGATCGCGAGCGAGGTTCG
GGCGTTGTTCGCGGTGGCATCCCGTCCCGAGATCGTGTCGCTCGCCGGGGGGATGCCTCCGGTCGACGTCCTTCCGTTGG
AGGCGGTCGCGGCGACGGTGTCGGAGCTGGTGTTGAGCCGGGGTGCGGTGGCGCTTCAGTACGGCTCGGCGCAGGGTGAT
CCGGGATTGCGGGCGCGGATCTGTGACGTGATGGCGATGGAGGGCATCACCGACACCCACCCGGACAACGTGGTGGTGAC
CGCCGGGTCGCAGCAGGCGCTGGACCTGCTCACCCGCGTGTTCATCGACCCGGGCGACGTGGTCGTCACCGAGGGGCCGA
CCTACGTCACGGCGATCAACACGTTCGCGGCCTACCAGGCGCGGATCGTGCACGTGCCGATGGACGGCGACGGCCTGTCG
CCGTCCGCGCTCGCGGAGACGTTGAGCCGCCTGGCCGCCGAGGGTGCCCGGGTGAAGCTGCTCTACACGGTGCCGACGTT
TCAGAATCCCGGCGGGATCACGCTGACCCCGCCACGGCGGGCCGAGGTGATCGAGCTGTGCCGCCGGGCGGGGGTACTCG
TGGTCGAGGACAACCCGTACGGGCTGCTGTCGTTCACAGGTGAGCCGGTGCGGGCGATGCGCGCCGACGCCCCGGATGAC
GTGGTGTATCTGGGTTCGTTCTCGAAGACGTTGGCGCCGGGGCTGCGGGTCGGGTGGGCGCTGGCACCGCCTGCGGTGAC
CGCCCGGCTGGTGTTGGCGGCGGAGTCGGCGATCCTGTCGCAGTCGATGTTCACGCAGCTGGCCGTTGAGCGGTATCTGG
CGACCCAGCCGTGGGCGGAGCAGGTGAAGGCGTTCCGGGAGATGTACCGGGAGCGCCGCGACGCCATGCTCGACGCCCTG
GACGAGGTGATGCCGCCCGGTGCGAGCTGGACCCGCCCTGACGGGGGGTTTTTCGTCTGGTTGACGCTGCCGGACGGGGT
AAACACGAAGGCGATGTTGCCGCGGGCGATCGCTGCCCGGGTCGCCTACGTTCCCGGGATCGGGTTCTACGCCGACGGCT
CGGGTGGTACCAGCATGCGGTTGTCGTACTGCTACCCGCCGCCGGAGCGTATCCGCGAGGGGGTCGGCCGGTTGGGCGCG
GTCGTGCGGGATGAGCTGGCCCTGCGTGACACCTTCGGTTCCCGTCCCTGA

Upstream 100 bases:

>100_bases
CAGGTGCAGTCGGCGAGTCGGCGGAGAACGTGTTGGGCCGATTGCGGCCGGCGCCGCGACCCTCACTGCCCGGTGTGCGG
CGGGGTGGGTACGGCAGGTA

Downstream 100 bases:

>100_bases
TGTGCCCGACGCTGTGAAGGATCCGACGATGACTGATCTGGGCCGTGTGCTGATCCTCGCCGGCGGGCTGTCCCCCGAAC
GGGAGGTCTCCCTGCATTCG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: AspB-1 [H]

Number of amino acids: Translated: 416; Mature: 415

Protein sequence:

>416_residues
MSRSVTLDRWRDRYAQRAQGMIASEVRALFAVASRPEIVSLAGGMPPVDVLPLEAVAATVSELVLSRGAVALQYGSAQGD
PGLRARICDVMAMEGITDTHPDNVVVTAGSQQALDLLTRVFIDPGDVVVTEGPTYVTAINTFAAYQARIVHVPMDGDGLS
PSALAETLSRLAAEGARVKLLYTVPTFQNPGGITLTPPRRAEVIELCRRAGVLVVEDNPYGLLSFTGEPVRAMRADAPDD
VVYLGSFSKTLAPGLRVGWALAPPAVTARLVLAAESAILSQSMFTQLAVERYLATQPWAEQVKAFREMYRERRDAMLDAL
DEVMPPGASWTRPDGGFFVWLTLPDGVNTKAMLPRAIAARVAYVPGIGFYADGSGGTSMRLSYCYPPPERIREGVGRLGA
VVRDELALRDTFGSRP

Sequences:

>Translated_416_residues
MSRSVTLDRWRDRYAQRAQGMIASEVRALFAVASRPEIVSLAGGMPPVDVLPLEAVAATVSELVLSRGAVALQYGSAQGD
PGLRARICDVMAMEGITDTHPDNVVVTAGSQQALDLLTRVFIDPGDVVVTEGPTYVTAINTFAAYQARIVHVPMDGDGLS
PSALAETLSRLAAEGARVKLLYTVPTFQNPGGITLTPPRRAEVIELCRRAGVLVVEDNPYGLLSFTGEPVRAMRADAPDD
VVYLGSFSKTLAPGLRVGWALAPPAVTARLVLAAESAILSQSMFTQLAVERYLATQPWAEQVKAFREMYRERRDAMLDAL
DEVMPPGASWTRPDGGFFVWLTLPDGVNTKAMLPRAIAARVAYVPGIGFYADGSGGTSMRLSYCYPPPERIREGVGRLGA
VVRDELALRDTFGSRP
>Mature_415_residues
SRSVTLDRWRDRYAQRAQGMIASEVRALFAVASRPEIVSLAGGMPPVDVLPLEAVAATVSELVLSRGAVALQYGSAQGDP
GLRARICDVMAMEGITDTHPDNVVVTAGSQQALDLLTRVFIDPGDVVVTEGPTYVTAINTFAAYQARIVHVPMDGDGLSP
SALAETLSRLAAEGARVKLLYTVPTFQNPGGITLTPPRRAEVIELCRRAGVLVVEDNPYGLLSFTGEPVRAMRADAPDDV
VYLGSFSKTLAPGLRVGWALAPPAVTARLVLAAESAILSQSMFTQLAVERYLATQPWAEQVKAFREMYRERRDAMLDALD
EVMPPGASWTRPDGGFFVWLTLPDGVNTKAMLPRAIAARVAYVPGIGFYADGSGGTSMRLSYCYPPPERIREGVGRLGAV
VRDELALRDTFGSRP

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=414, Percent_Identity=29.4685990338164, Blast_Score=173, Evalue=3e-43,
Organism=Homo sapiens, GI33469970, Length=414, Percent_Identity=29.4685990338164, Blast_Score=173, Evalue=3e-43,
Organism=Escherichia coli, GI1787710, Length=379, Percent_Identity=29.5514511873351, Blast_Score=161, Evalue=8e-41,
Organism=Escherichia coli, GI1790797, Length=381, Percent_Identity=27.0341207349081, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1788722, Length=340, Percent_Identity=25, Blast_Score=65, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6321236, Length=486, Percent_Identity=23.0452674897119, Blast_Score=129, Evalue=1e-30,
Organism=Saccharomyces cerevisiae, GI6321000, Length=433, Percent_Identity=24.4803695150115, Blast_Score=94, Evalue=5e-20,
Organism=Saccharomyces cerevisiae, GI6321929, Length=473, Percent_Identity=20.2959830866808, Blast_Score=86, Evalue=1e-17,
Organism=Drosophila melanogaster, GI21356535, Length=395, Percent_Identity=26.3291139240506, Blast_Score=147, Evalue=1e-35,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: NA

Molecular weight: Translated: 44749; Mature: 44618

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRSVTLDRWRDRYAQRAQGMIASEVRALFAVASRPEIVSLAGGMPPVDVLPLEAVAATV
CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHH
SELVLSRGAVALQYGSAQGDPGLRARICDVMAMEGITDTHPDNVVVTAGSQQALDLLTRV
HHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHH
FIDPGDVVVTEGPTYVTAINTFAAYQARIVHVPMDGDGLSPSALAETLSRLAAEGARVKL
HCCCCCEEEECCCEEEEEHHHHHEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE
LYTVPTFQNPGGITLTPPRRAEVIELCRRAGVLVVEDNPYGLLSFTGEPVRAMRADAPDD
EEEECCCCCCCCEEECCCCHHHHHHHHHHCCEEEEECCCCEEEEECCCCHHHHCCCCCCC
VVYLGSFSKTLAPGLRVGWALAPPAVTARLVLAAESAILSQSMFTQLAVERYLATQPWAE
EEEECCCHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
QVKAFREMYRERRDAMLDALDEVMPPGASWTRPDGGFFVWLTLPDGVNTKAMLPRAIAAR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHH
VAYVPGIGFYADGSGGTSMRLSYCYPPPERIREGVGRLGAVVRDELALRDTFGSRP
HHHCCCCCEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SRSVTLDRWRDRYAQRAQGMIASEVRALFAVASRPEIVSLAGGMPPVDVLPLEAVAATV
CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHH
SELVLSRGAVALQYGSAQGDPGLRARICDVMAMEGITDTHPDNVVVTAGSQQALDLLTRV
HHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHH
FIDPGDVVVTEGPTYVTAINTFAAYQARIVHVPMDGDGLSPSALAETLSRLAAEGARVKL
HCCCCCEEEECCCEEEEEHHHHHEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE
LYTVPTFQNPGGITLTPPRRAEVIELCRRAGVLVVEDNPYGLLSFTGEPVRAMRADAPDD
EEEECCCCCCCCEEECCCCHHHHHHHHHHCCEEEEECCCCEEEEECCCCHHHHCCCCCCC
VVYLGSFSKTLAPGLRVGWALAPPAVTARLVLAAESAILSQSMFTQLAVERYLATQPWAE
EEEECCCHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
QVKAFREMYRERRDAMLDALDEVMPPGASWTRPDGGFFVWLTLPDGVNTKAMLPRAIAAR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHH
VAYVPGIGFYADGSGGTSMRLSYCYPPPERIREGVGRLGAVVRDELALRDTFGSRP
HHHCCCCCEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8899719; 11427726 [H]