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The map label for this gene is ybiO [C]

Identifier: 158318417

GI number: 158318417

Start: 8117674

End: 8118555

Strand: Reverse

Name: ybiO [C]

Synonym: Franean1_6682

Alternate gene names: 158318417

Gene position: 8118555-8117674 (Counterclockwise)

Preceding gene: 158318418

Following gene: 158318414

Centisome position: 90.39

GC content: 69.16

Gene sequence:

>882_bases
ATGATCACGGCGGCCGCTCCGCTGACGGACATCTCCGAGTGGGCCCGTGGTCGCGGGCTCGAGATCGTCATGATCGTGAT
TGCGGCCGTCCTGCTGACCCGGTTCGCGACCTGGGTGGGTGACCGCGTCGAGCGGCGCATCGACCAGCAGTCGAGCCAGA
GCGACGGGGTGGTGCGCTCCGAGGCGACGAAGCATCGCCACGCGGTCGTCCAGGTGCTGACCTGGGTGTCACTGGCTCTG
GTCTACTGCGTGGCGGTCGTGTTGGTGCTCCAGCGCCTCGGGGTGCCGGTCACCGGCATCGTCGCCCCGGCGACCGTGGT
CGGTGTGGCGCTCGGCTTCGGCGCGCAGCGCGTCGTCCAGGATGTGCTCGCCGGGTTCTTCCTGGTCACCGAGCGGCAGT
ACGGCTTCGGGGACCTCGTCCGCCTGGTAGTCCAGGGGGCGCCGAGCGCGGTCACTGGCACGGTGGAGGAGGTCACGCTG
CGCATCACCAGCGTGCGGACGTCCAACGGCGAGGTGGTGATCACGCCGAACGGGCAGATCGTCCAGGTGGTGAACCTGTC
CCGGGACTGGGCGCGGGCTGTCGTGGACGTCCCGATACCCACAAGTGTTGATGTTACTACGGTAAGTGATGTGTTGGCCC
GGGTGGGTGCCGAGGCGTACGCCGACGACGCGCTGCACGACCTGCTGCTGGACGCGCCGACCGTGATGGGGGTGGAGAGC
ATCGACCTCGACCAGTTCAAGATCCGGGTCGTTGCCCGGACCCTGCCGGGCAAGCAGTTCGAGGTCGGTCGGGCGCTGCG
GGCCAAGATCACGGTCGCGCTGCTGCGTGCCGGGATCCACGTGCCGGCCGACCTCGACACGGCCCCGCCGACGTCCTCAT
GA

Upstream 100 bases:

>100_bases
GCGCGGTGCCGCCGGCCGCGTGTGTGGCCTGCGGGAAGCCGACGCGGGCCGAGCCACGCCGACGTCATGATCGCGCCGGC
GTCATGACTGTGGCGGCGGC

Downstream 100 bases:

>100_bases
GGTTCCTCGACCGGATACCGGCGCAGCGCTCGACGCTGCTGCTCGTGTTCGCGCTCGTCGCCGTGTTCGCGCTGTACATC
CTGGTACGGCCCGAGTCGCT

Product: mechanosensitive ion channel MscS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MITAAAPLTDISEWARGRGLEIVMIVIAAVLLTRFATWVGDRVERRIDQQSSQSDGVVRSEATKHRHAVVQVLTWVSLAL
VYCVAVVLVLQRLGVPVTGIVAPATVVGVALGFGAQRVVQDVLAGFFLVTERQYGFGDLVRLVVQGAPSAVTGTVEEVTL
RITSVRTSNGEVVITPNGQIVQVVNLSRDWARAVVDVPIPTSVDVTTVSDVLARVGAEAYADDALHDLLLDAPTVMGVES
IDLDQFKIRVVARTLPGKQFEVGRALRAKITVALLRAGIHVPADLDTAPPTSS

Sequences:

>Translated_293_residues
MITAAAPLTDISEWARGRGLEIVMIVIAAVLLTRFATWVGDRVERRIDQQSSQSDGVVRSEATKHRHAVVQVLTWVSLAL
VYCVAVVLVLQRLGVPVTGIVAPATVVGVALGFGAQRVVQDVLAGFFLVTERQYGFGDLVRLVVQGAPSAVTGTVEEVTL
RITSVRTSNGEVVITPNGQIVQVVNLSRDWARAVVDVPIPTSVDVTTVSDVLARVGAEAYADDALHDLLLDAPTVMGVES
IDLDQFKIRVVARTLPGKQFEVGRALRAKITVALLRAGIHVPADLDTAPPTSS
>Mature_293_residues
MITAAAPLTDISEWARGRGLEIVMIVIAAVLLTRFATWVGDRVERRIDQQSSQSDGVVRSEATKHRHAVVQVLTWVSLAL
VYCVAVVLVLQRLGVPVTGIVAPATVVGVALGFGAQRVVQDVLAGFFLVTERQYGFGDLVRLVVQGAPSAVTGTVEEVTL
RITSVRTSNGEVVITPNGQIVQVVNLSRDWARAVVDVPIPTSVDVTTVSDVLARVGAEAYADDALHDLLLDAPTVMGVES
IDLDQFKIRVVARTLPGKQFEVGRALRAKITVALLRAGIHVPADLDTAPPTSS

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081787, Length=283, Percent_Identity=25.7950530035336, Blast_Score=79, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR006685 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 31238; Mature: 31238

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITAAAPLTDISEWARGRGLEIVMIVIAAVLLTRFATWVGDRVERRIDQQSSQSDGVVRS
CCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
EATKHRHAVVQVLTWVSLALVYCVAVVLVLQRLGVPVTGIVAPATVVGVALGFGAQRVVQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHH
DVLAGFFLVTERQYGFGDLVRLVVQGAPSAVTGTVEEVTLRITSVRTSNGEVVITPNGQI
HHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHCCHHHHEEEEEEEEECCCEEEECCCCCE
VQVVNLSRDWARAVVDVPIPTSVDVTTVSDVLARVGAEAYADDALHDLLLDAPTVMGVES
EEEEECCHHHHHHEEECCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHCCCCC
IDLDQFKIRVVARTLPGKQFEVGRALRAKITVALLRAGIHVPADLDTAPPTSS
CCHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MITAAAPLTDISEWARGRGLEIVMIVIAAVLLTRFATWVGDRVERRIDQQSSQSDGVVRS
CCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
EATKHRHAVVQVLTWVSLALVYCVAVVLVLQRLGVPVTGIVAPATVVGVALGFGAQRVVQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHH
DVLAGFFLVTERQYGFGDLVRLVVQGAPSAVTGTVEEVTLRITSVRTSNGEVVITPNGQI
HHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHCCHHHHEEEEEEEEECCCEEEECCCCCE
VQVVNLSRDWARAVVDVPIPTSVDVTTVSDVLARVGAEAYADDALHDLLLDAPTVMGVES
EEEEECCHHHHHHEEECCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHCCCCC
IDLDQFKIRVVARTLPGKQFEVGRALRAKITVALLRAGIHVPADLDTAPPTSS
CCHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12948626; 8366043 [H]