| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is yqjH [C]
Identifier: 158318368
GI number: 158318368
Start: 8065488
End: 8066333
Strand: Direct
Name: yqjH [C]
Synonym: Franean1_6633
Alternate gene names: 158318368
Gene position: 8065488-8066333 (Clockwise)
Preceding gene: 158318366
Following gene: 158318371
Centisome position: 89.8
GC content: 75.06
Gene sequence:
>846_bases GTGACCGAACACTCCCCGGCTGCCCCCTCGGCCCGTCCCCGGCGGGGGCCGCTCGCGCTGCTGGACCGGATACTGCTGCG CGCGGAGGTCGACAGCGTCGACCAGCTGGCCCGGCGCACCCGCCGGATCGTGCTGGCCGGCCCCGCGCTCGCCGGCCTCA CCTGGACACCGGGCCAGAACGTGACCCTGTTCCCCCAGGACCCGACCCGGCTGGACAGTTGGCGGCAGGGGCCCCGCGAC ATCAAGCGCAGCTACTCGGTCTGGGAGTACCACCCGGCCGGACGGCTGGCGTTGGCCGTGTACGACCACGGCGGTGACTC CCCCGGCGCGGTGTGGGCCCGCGGCGTCGCGCCGGGAGACGAAGCGATCATCACGAAGCCGGACGGACGCCTCGTCGCGC GGGCCGACGCGAGCTTCCACCTGTTCGTCGGTGACGACACTGCGGCGGTTCCCTTCGGCGCGATCCTGCGCGGCCTGCCT GCTTCCGCCCAGGTCCGCGGTGTGTTCGAGTGCGACGACCCAGCGGACTCACTGCCCTTGCCCCGGGCCGGGGACCTCGC CTGGAGTTACCGCCACGGCGCCCCGGCCGCCGGCTCCCCGTTGCTGCCGGCGGCGCTCGCCGACCTCGACCTGCCCGATC CGCGGGACCCCGCCACCAGCACCAGCATCGACATCGGGTCCGGGTCCGGATCCGATGGCCGCGCGGGCCGGCCCGTCGCC TACGTCGCCGGGGAGGCCCGGACCTGCCAGGCCGTCCGCCGCCACCTGGTGAGTGAGCGGGGCTGGGAGCGCCGCCAGGT CATCGTCCAGCCGTTCTGGACCCCGGGCAAACGCGGCATGGACTGA
Upstream 100 bases:
>100_bases GGAGGTTGAGGTCCAGCGAGGACGTCGATTGCATGGCATGCATCTTGCCATTGAGTAAGTTTCATTTGAGTGCTGATCGT CTGCTGCCTACGCTCGTCTC
Downstream 100 bases:
>100_bases CCCGGCCACTCACGATCCGGCGTCCACCTCGGGCGGCGGGGCGGCTCCGGGGTCTGGCAGAGGCGGCGCGAGGACCGTCC GGTGACGCGCCATCAGTTCC
Product: siderophore-interacting protein
Products: NA
Alternate protein names: Siderophore-Interacting Protein-Like Protein; Iron-Chelator Utilization Protein
Number of amino acids: Translated: 281; Mature: 280
Protein sequence:
>281_residues MTEHSPAAPSARPRRGPLALLDRILLRAEVDSVDQLARRTRRIVLAGPALAGLTWTPGQNVTLFPQDPTRLDSWRQGPRD IKRSYSVWEYHPAGRLALAVYDHGGDSPGAVWARGVAPGDEAIITKPDGRLVARADASFHLFVGDDTAAVPFGAILRGLP ASAQVRGVFECDDPADSLPLPRAGDLAWSYRHGAPAAGSPLLPAALADLDLPDPRDPATSTSIDIGSGSGSDGRAGRPVA YVAGEARTCQAVRRHLVSERGWERRQVIVQPFWTPGKRGMD
Sequences:
>Translated_281_residues MTEHSPAAPSARPRRGPLALLDRILLRAEVDSVDQLARRTRRIVLAGPALAGLTWTPGQNVTLFPQDPTRLDSWRQGPRD IKRSYSVWEYHPAGRLALAVYDHGGDSPGAVWARGVAPGDEAIITKPDGRLVARADASFHLFVGDDTAAVPFGAILRGLP ASAQVRGVFECDDPADSLPLPRAGDLAWSYRHGAPAAGSPLLPAALADLDLPDPRDPATSTSIDIGSGSGSDGRAGRPVA YVAGEARTCQAVRRHLVSERGWERRQVIVQPFWTPGKRGMD >Mature_280_residues TEHSPAAPSARPRRGPLALLDRILLRAEVDSVDQLARRTRRIVLAGPALAGLTWTPGQNVTLFPQDPTRLDSWRQGPRDI KRSYSVWEYHPAGRLALAVYDHGGDSPGAVWARGVAPGDEAIITKPDGRLVARADASFHLFVGDDTAAVPFGAILRGLPA SAQVRGVFECDDPADSLPLPRAGDLAWSYRHGAPAAGSPLLPAALADLDLPDPRDPATSTSIDIGSGSGSDGRAGRPVAY VAGEARTCQAVRRHLVSERGWERRQVIVQPFWTPGKRGMD
Specific function: Unknown
COG id: COG2375
COG function: function code P; Siderophore-interacting protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30089; Mature: 29958
Theoretical pI: Translated: 8.71; Mature: 8.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEHSPAAPSARPRRGPLALLDRILLRAEVDSVDQLARRTRRIVLAGPALAGLTWTPGQN CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCEEECCCCC VTLFPQDPTRLDSWRQGPRDIKRSYSVWEYHPAGRLALAVYDHGGDSPGAVWARGVAPGD EEECCCCCHHHHHHCCCHHHHHHCCCEEEECCCCEEEEEEEECCCCCCCCEEEECCCCCC EAIITKPDGRLVARADASFHLFVGDDTAAVPFGAILRGLPASAQVRGVFECDDPADSLPL CEEEECCCCCEEEEECCEEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEECCCCCCCCCC PRAGDLAWSYRHGAPAAGSPLLPAALADLDLPDPRDPATSTSIDIGSGSGSDGRAGRPVA CCCCCCEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEE YVAGEARTCQAVRRHLVSERGWERRQVIVQPFWTPGKRGMD EECCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCC >Mature Secondary Structure TEHSPAAPSARPRRGPLALLDRILLRAEVDSVDQLARRTRRIVLAGPALAGLTWTPGQN CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCEEECCCCC VTLFPQDPTRLDSWRQGPRDIKRSYSVWEYHPAGRLALAVYDHGGDSPGAVWARGVAPGD EEECCCCCHHHHHHCCCHHHHHHCCCEEEECCCCEEEEEEEECCCCCCCCEEEECCCCCC EAIITKPDGRLVARADASFHLFVGDDTAAVPFGAILRGLPASAQVRGVFECDDPADSLPL CEEEECCCCCEEEEECCEEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEECCCCCCCCCC PRAGDLAWSYRHGAPAAGSPLLPAALADLDLPDPRDPATSTSIDIGSGSGSDGRAGRPVA CCCCCCEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEE YVAGEARTCQAVRRHLVSERGWERRQVIVQPFWTPGKRGMD EECCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA