| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is 158318249
Identifier: 158318249
GI number: 158318249
Start: 7922690
End: 7923508
Strand: Direct
Name: 158318249
Synonym: Franean1_6514
Alternate gene names: NA
Gene position: 7922690-7923508 (Clockwise)
Preceding gene: 158318248
Following gene: 158318250
Centisome position: 88.21
GC content: 72.28
Gene sequence:
>819_bases ATGACCGGCGTCTACACCGTGGCGCGCAGCTACCGCGCCGAGCTGATCAAACTGCGCCGGCCGAGCACGGCGCTGGCCAT GGCCGTCCTCGGGTTCCTCACCGTCCTGTCGACGGTGCTGGTCATGGCCCTCGCCGACGAGAAGCCGACCCCACCGGGCC CCGGCGCCGGGCCGGGCTTCGATCTCTCCCTCACCCAGCTCGCCTCGTCCCAGGGCCTGATTCTGGGCTTCCGCGGCGGC ACGACCTTCATCGGACTGCTCATCTTCGTGGTCTTCGCGATCAGCATGACCACCGAGTACGGCCAGGGGACGCTGCGCAC CCTGTTCCTGAAGGAGCCCCGCCGGCTGGGCTGGCTGGCCGGACGGCTCGGCGTCATGCTCTCCGCCGTCGCGGTGTCGC TGGTCGCCGCCCTCGGCCTGAGCGTCGCCGCCGCGACGGTCATGGCCGCCATCCGGGACGTCGACACAAGCGCGTGGTGG ACGTCGGCCGCCCTCGGTGAGGTGGCGGGCGCCTACGCGAACGCGCTGCTCGCGGCCGTCTTCTTCGCCCTCGTCGGCAC GATGCTGGGAATCCTGCTGCGCTCGACGAGCGCCGCGCTGCTCATCGGCATCGCGTGGATGTTCCCGATCGAGCACATCG TCCAGGAGTCGTGGAGCGGTGCCACCAGGGTCCTGCCCGGGCTCGTCTTCGACGCGGTCGGCCGGGGCGGCCTGCCCGAC GCCTCCTACGGGCCGGCGCTACTCACCGCCGTCGCGTACGCGCTGGTGGCGGCCGCGATCGGAGCGGTGAGCCTGCGCCG CCGGGACGTCACGGCCTGA
Upstream 100 bases:
>100_bases GCCTCGAGGACCGCTACCAGGGCCTGGTCGAAAGCACCCGAGAGACCACCCGAAGCACCGGCACCAGCAGCACGAGCACC AGCACCAGAGGGGAAGCCCG
Downstream 100 bases:
>100_bases CGGGATCCGCCGTGCGCTCCCGTCCGACAGGGGGATTCGTCCATCTCGCCCAGGCGGGTGGCCGGATCTCCCCGTCGCGG CGTTGACTGTGTGCATGGCC
Product: putative ABC transporter integral membrane protein
Products: NA
Alternate protein names: ABC Transporter Integral Membrane Protein
Number of amino acids: Translated: 272; Mature: 271
Protein sequence:
>272_residues MTGVYTVARSYRAELIKLRRPSTALAMAVLGFLTVLSTVLVMALADEKPTPPGPGAGPGFDLSLTQLASSQGLILGFRGG TTFIGLLIFVVFAISMTTEYGQGTLRTLFLKEPRRLGWLAGRLGVMLSAVAVSLVAALGLSVAAATVMAAIRDVDTSAWW TSAALGEVAGAYANALLAAVFFALVGTMLGILLRSTSAALLIGIAWMFPIEHIVQESWSGATRVLPGLVFDAVGRGGLPD ASYGPALLTAVAYALVAAAIGAVSLRRRDVTA
Sequences:
>Translated_272_residues MTGVYTVARSYRAELIKLRRPSTALAMAVLGFLTVLSTVLVMALADEKPTPPGPGAGPGFDLSLTQLASSQGLILGFRGG TTFIGLLIFVVFAISMTTEYGQGTLRTLFLKEPRRLGWLAGRLGVMLSAVAVSLVAALGLSVAAATVMAAIRDVDTSAWW TSAALGEVAGAYANALLAAVFFALVGTMLGILLRSTSAALLIGIAWMFPIEHIVQESWSGATRVLPGLVFDAVGRGGLPD ASYGPALLTAVAYALVAAAIGAVSLRRRDVTA >Mature_271_residues TGVYTVARSYRAELIKLRRPSTALAMAVLGFLTVLSTVLVMALADEKPTPPGPGAGPGFDLSLTQLASSQGLILGFRGGT TFIGLLIFVVFAISMTTEYGQGTLRTLFLKEPRRLGWLAGRLGVMLSAVAVSLVAALGLSVAAATVMAAIRDVDTSAWWT SAALGEVAGAYANALLAAVFFALVGTMLGILLRSTSAALLIGIAWMFPIEHIVQESWSGATRVLPGLVFDAVGRGGLPDA SYGPALLTAVAYALVAAAIGAVSLRRRDVTA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28141; Mature: 28009
Theoretical pI: Translated: 10.20; Mature: 10.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGVYTVARSYRAELIKLRRPSTALAMAVLGFLTVLSTVLVMALADEKPTPPGPGAGPGF CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC DLSLTQLASSQGLILGFRGGTTFIGLLIFVVFAISMTTEYGQGTLRTLFLKEPRRLGWLA CHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHH GRLGVMLSAVAVSLVAALGLSVAAATVMAAIRDVDTSAWWTSAALGEVAGAYANALLAAV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH FFALVGTMLGILLRSTSAALLIGIAWMFPIEHIVQESWSGATRVLPGLVFDAVGRGGLPD HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCC ASYGPALLTAVAYALVAAAIGAVSLRRRDVTA CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TGVYTVARSYRAELIKLRRPSTALAMAVLGFLTVLSTVLVMALADEKPTPPGPGAGPGF CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC DLSLTQLASSQGLILGFRGGTTFIGLLIFVVFAISMTTEYGQGTLRTLFLKEPRRLGWLA CHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHH GRLGVMLSAVAVSLVAALGLSVAAATVMAAIRDVDTSAWWTSAALGEVAGAYANALLAAV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH FFALVGTMLGILLRSTSAALLIGIAWMFPIEHIVQESWSGATRVLPGLVFDAVGRGGLPD HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCC ASYGPALLTAVAYALVAAAIGAVSLRRRDVTA CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA