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The map label for this gene is yciR [C]

Identifier: 158318156

GI number: 158318156

Start: 7797518

End: 7799932

Strand: Reverse

Name: yciR [C]

Synonym: Franean1_6421

Alternate gene names: 158318156

Gene position: 7799932-7797518 (Counterclockwise)

Preceding gene: 158318162

Following gene: 158318155

Centisome position: 86.84

GC content: 74.99

Gene sequence:

>2415_bases
ATGCGGAAGCGGTACTCCACGGCGGGACTGAGGTATCCGGTGACGATCGAGACCGAGACGGCGGACCTGGTGGACCGGTG
GTTCGCCGAGATCACTGCGGTCGATCTCCTTCCGCTCGCCGCCGCGGACGCCCGCGCCTGGCTGGCACGCCTGGCGGCGG
CGCTGGTCCGGGCGGTGAGTGCCGAGCCGTTCCGGCCCGAGATCGGCTATGACGTGGGCGTGCGGCTGGTCCACGGCCAC
GTGACGTCCGGTGAGGCCCTCGGACGGACCGTCCGGCTGTTCGGCCGGCACCTGGCCCACCACACCGGCGGCTGGGCCCG
CCCGGCCGACGGCCCCGAGACCAGCCCGGCGGGCACAGCTCACCCGGGCGCCGCGACGGCGACCGCCGCGATGGGGCTCG
CCGGCGGCGCGTCCGCGGCGACGGGGCCTGCCGCCACGGCCACCGCCGCGAAGGGGCTCGCCGGGCGGGTGCCCACGGGT
ACGGCGACCGCCGCGATGGGGAACAGCGGCGCGGCCGCTCCCGGGGCCGGGCCGTCGGGTGAGGGCGCTCTGCTGCGCAG
GCCGCCGCGGGCCGACACGCTGCCGGGCCGGGTGCCCGCCGCGTCGACGGAGCGGGTCGTGGACCTGCTGGGCGAGCTCG
TCCGCGGCCACACCGAGACCCTCCGGGAGCGCACGCGGGACGGCCAGGCCGCAGCGCGTCGCGTCGACCTCGGCGCCCGG
GCCCGCGCCGAGCGCGAGCGGCGGATCTCCCAGACCAGGCTGCACGCCGTGCTCAGCGGCACCGCCCTCGGCATGCTCGT
CGCCGACCGGACGGGGCGCATCGTGGAGGCCAGCGACGCCGCGCTGGAGATCCTCGGCCTCAGCGGGCACACCGCCCCGC
TGGCCTGGCCGCTGCCCGAGATCGTCCATCCGGCAGACCGGGAGGCGGTGCGCTGGCTGTGGCGCGAGGCCCGGCGCGGG
CGGTCCCGCGGAGAATGCCGCATCCTGCGGCCCGACGGGACGCCGACCTGGGTGGCGCTGACGCTCTCGACCACCTGGCC
CGGAGTGGCCGGTGACTGGTTCGGCGTCGCGATGCTCGAGGACATCACCGAACGCCGCCGCCTGCAGGAGGAGCTCCGCT
TCCACGCCCGGCACGACCCGTTGACCGGGCTCGCGAACCGGGCCGAGTTCCTCGACCGGTTGCAGGCGGTGTTCCGGGAG
GCGCCGCCGTCCGCGCGGGTCGGCCTGTGCTACCTGGACCTCGACCGGTTCAAAATGATCAACGAGGGTTTCGGCTACGA
GGTGGGCGACCAGCTCCTCGCCGAGGTCGCCCGCCGGCTGGGCGGGATGGCCGTGGCGGAGCGCACCGTGGCCCGGATGG
GCGGCGACGAGTTCATGATTCTCGTCCCGGACTGCGGTGGGCTCGACGAGATGACCGGCATCGCCCGGCGGGTCCTGGAC
ACGCTGCGCGAGCCCGCCCGCGTCGACGGCCGCGACCTGCCCGCGACGTGCAGCATCGGTGTGGTCGAGATGGCGGTCGC
CGACACCAGCCCGTCCGACCTCGTCGCGGCGGCCGACGCCGCGCTGACCTGGGCGAAGAACGGCGGCAAGAACCGGTGGA
CGGCCTTCGACCCCGACCGCGGCACCCGGGAGGCCGCGCGTGGCCTGATGTCCCGATCGATGCGCCCGGGCCTGGACAGA
GGCGAGTTCTCGCTGGCCTACCAGCCGATCATCGACCTCCGGCACGGCACGGTCGCCGGGGCCGAGGCATTGCTCCGCTG
GGACCACCCCCGCCTCGGGCCAACCCGTCCGGGTGAGTTCATCGCCCTCGCGGAGGACTCCGGCTTCATCGTCCAGCTCG
GGCTGTGGGTGCTCGAACGGGCCTGCGAGACCGCGCGTGACTGGCCGGCGCACATGTTCATCAGCGTGAACCTCTCCGCC
CGCCAGCTCCGCGAGCCGGGCCTGGTCGGCGCGGTCAAGAAGGTGCTGGACCGGACGGGCCTGCCGCCGCGGCGGCTCCA
GCTCGAGCTGACCGAGACGGTGCTCATGGACTCCGGTGGCGACCAGGTCACCGCGCTGCACGCGCTCAACGACCTGGGCG
TCCGCATCGTCATCGACGACTTCGGCACCGGGTGGTCGAACTTCGTCTACCTGTCGACCATGCCGGTGCGCGGGCTGAAG
CTCGCCGGGCTCTTCGTCGAGAAGCTCGGCCGGGGCACCGAGCCCGGCCGGGACGACCACCTCGTGGAGGCGATCGTGGA
GTTCGCTCGCAGGCTGCGGCTGTCGGTCACCGCCGAGGGGGTCGAGGAGCCGGAGCAGGCGGCGGCGCTGCGCTCGTTCG
GCGCGGACCTGGGCCAGGGCCACCTGTTCGGAGAGCCGGTCCCCGCCGACGAGTTCGCCGCGACCATGCTCCGCCGCGCC
TTCGCCGCCAGCTGA

Upstream 100 bases:

>100_bases
CGTGCAGACTGGAGTACGGTTTGCGGCGGTTGGGAGAATCCGACCGTTTTGTCCGAATGATAACGCGAGGTAAGCGAGCA
GTTCCGGTGAATGACCGGCA

Downstream 100 bases:

>100_bases
CCGAACCCCCGCCCGGCCCGCGCGGGGACCACCGACCCTGCCCGCGCTGGGGGCACACGCGCTGATTGGCCCACGTCGGG
CCACGCGGTCGATGCTGCTG

Product: PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 804; Mature: 804

Protein sequence:

>804_residues
MRKRYSTAGLRYPVTIETETADLVDRWFAEITAVDLLPLAAADARAWLARLAAALVRAVSAEPFRPEIGYDVGVRLVHGH
VTSGEALGRTVRLFGRHLAHHTGGWARPADGPETSPAGTAHPGAATATAAMGLAGGASAATGPAATATAAKGLAGRVPTG
TATAAMGNSGAAAPGAGPSGEGALLRRPPRADTLPGRVPAASTERVVDLLGELVRGHTETLRERTRDGQAAARRVDLGAR
ARAERERRISQTRLHAVLSGTALGMLVADRTGRIVEASDAALEILGLSGHTAPLAWPLPEIVHPADREAVRWLWREARRG
RSRGECRILRPDGTPTWVALTLSTTWPGVAGDWFGVAMLEDITERRRLQEELRFHARHDPLTGLANRAEFLDRLQAVFRE
APPSARVGLCYLDLDRFKMINEGFGYEVGDQLLAEVARRLGGMAVAERTVARMGGDEFMILVPDCGGLDEMTGIARRVLD
TLREPARVDGRDLPATCSIGVVEMAVADTSPSDLVAAADAALTWAKNGGKNRWTAFDPDRGTREAARGLMSRSMRPGLDR
GEFSLAYQPIIDLRHGTVAGAEALLRWDHPRLGPTRPGEFIALAEDSGFIVQLGLWVLERACETARDWPAHMFISVNLSA
RQLREPGLVGAVKKVLDRTGLPPRRLQLELTETVLMDSGGDQVTALHALNDLGVRIVIDDFGTGWSNFVYLSTMPVRGLK
LAGLFVEKLGRGTEPGRDDHLVEAIVEFARRLRLSVTAEGVEEPEQAAALRSFGADLGQGHLFGEPVPADEFAATMLRRA
FAAS

Sequences:

>Translated_804_residues
MRKRYSTAGLRYPVTIETETADLVDRWFAEITAVDLLPLAAADARAWLARLAAALVRAVSAEPFRPEIGYDVGVRLVHGH
VTSGEALGRTVRLFGRHLAHHTGGWARPADGPETSPAGTAHPGAATATAAMGLAGGASAATGPAATATAAKGLAGRVPTG
TATAAMGNSGAAAPGAGPSGEGALLRRPPRADTLPGRVPAASTERVVDLLGELVRGHTETLRERTRDGQAAARRVDLGAR
ARAERERRISQTRLHAVLSGTALGMLVADRTGRIVEASDAALEILGLSGHTAPLAWPLPEIVHPADREAVRWLWREARRG
RSRGECRILRPDGTPTWVALTLSTTWPGVAGDWFGVAMLEDITERRRLQEELRFHARHDPLTGLANRAEFLDRLQAVFRE
APPSARVGLCYLDLDRFKMINEGFGYEVGDQLLAEVARRLGGMAVAERTVARMGGDEFMILVPDCGGLDEMTGIARRVLD
TLREPARVDGRDLPATCSIGVVEMAVADTSPSDLVAAADAALTWAKNGGKNRWTAFDPDRGTREAARGLMSRSMRPGLDR
GEFSLAYQPIIDLRHGTVAGAEALLRWDHPRLGPTRPGEFIALAEDSGFIVQLGLWVLERACETARDWPAHMFISVNLSA
RQLREPGLVGAVKKVLDRTGLPPRRLQLELTETVLMDSGGDQVTALHALNDLGVRIVIDDFGTGWSNFVYLSTMPVRGLK
LAGLFVEKLGRGTEPGRDDHLVEAIVEFARRLRLSVTAEGVEEPEQAAALRSFGADLGQGHLFGEPVPADEFAATMLRRA
FAAS
>Mature_804_residues
MRKRYSTAGLRYPVTIETETADLVDRWFAEITAVDLLPLAAADARAWLARLAAALVRAVSAEPFRPEIGYDVGVRLVHGH
VTSGEALGRTVRLFGRHLAHHTGGWARPADGPETSPAGTAHPGAATATAAMGLAGGASAATGPAATATAAKGLAGRVPTG
TATAAMGNSGAAAPGAGPSGEGALLRRPPRADTLPGRVPAASTERVVDLLGELVRGHTETLRERTRDGQAAARRVDLGAR
ARAERERRISQTRLHAVLSGTALGMLVADRTGRIVEASDAALEILGLSGHTAPLAWPLPEIVHPADREAVRWLWREARRG
RSRGECRILRPDGTPTWVALTLSTTWPGVAGDWFGVAMLEDITERRRLQEELRFHARHDPLTGLANRAEFLDRLQAVFRE
APPSARVGLCYLDLDRFKMINEGFGYEVGDQLLAEVARRLGGMAVAERTVARMGGDEFMILVPDCGGLDEMTGIARRVLD
TLREPARVDGRDLPATCSIGVVEMAVADTSPSDLVAAADAALTWAKNGGKNRWTAFDPDRGTREAARGLMSRSMRPGLDR
GEFSLAYQPIIDLRHGTVAGAEALLRWDHPRLGPTRPGEFIALAEDSGFIVQLGLWVLERACETARDWPAHMFISVNLSA
RQLREPGLVGAVKKVLDRTGLPPRRLQLELTETVLMDSGGDQVTALHALNDLGVRIVIDDFGTGWSNFVYLSTMPVRGLK
LAGLFVEKLGRGTEPGRDDHLVEAIVEFARRLRLSVTAEGVEEPEQAAALRSFGADLGQGHLFGEPVPADEFAATMLRRA
FAAS

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=435, Percent_Identity=35.1724137931034, Blast_Score=253, Evalue=4e-68,
Organism=Escherichia coli, GI87081921, Length=444, Percent_Identity=30.1801801801802, Blast_Score=202, Evalue=7e-53,
Organism=Escherichia coli, GI226510982, Length=442, Percent_Identity=29.185520361991, Blast_Score=163, Evalue=5e-41,
Organism=Escherichia coli, GI1790496, Length=251, Percent_Identity=33.8645418326693, Blast_Score=135, Evalue=1e-32,
Organism=Escherichia coli, GI1788502, Length=258, Percent_Identity=35.2713178294574, Blast_Score=133, Evalue=5e-32,
Organism=Escherichia coli, GI1788381, Length=468, Percent_Identity=26.7094017094017, Blast_Score=130, Evalue=4e-31,
Organism=Escherichia coli, GI1787055, Length=260, Percent_Identity=32.6923076923077, Blast_Score=129, Evalue=6e-31,
Organism=Escherichia coli, GI1786507, Length=247, Percent_Identity=31.5789473684211, Blast_Score=128, Evalue=2e-30,
Organism=Escherichia coli, GI87081845, Length=269, Percent_Identity=30.8550185873606, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI87081980, Length=254, Percent_Identity=32.6771653543307, Blast_Score=122, Evalue=7e-29,
Organism=Escherichia coli, GI87081743, Length=242, Percent_Identity=30.1652892561983, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI1788849, Length=429, Percent_Identity=27.039627039627, Blast_Score=108, Evalue=2e-24,
Organism=Escherichia coli, GI87082096, Length=461, Percent_Identity=24.7288503253796, Blast_Score=100, Evalue=7e-22,
Organism=Escherichia coli, GI87081881, Length=344, Percent_Identity=29.9418604651163, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI1788956, Length=153, Percent_Identity=33.3333333333333, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87081977, Length=150, Percent_Identity=30.6666666666667, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI87082007, Length=181, Percent_Identity=31.4917127071823, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1786584, Length=199, Percent_Identity=27.1356783919598, Blast_Score=72, Evalue=2e-13,
Organism=Escherichia coli, GI1787262, Length=166, Percent_Identity=30.7228915662651, Blast_Score=69, Evalue=2e-12,
Organism=Escherichia coli, GI1787802, Length=172, Percent_Identity=28.4883720930233, Blast_Score=67, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 86302; Mature: 86302

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKRYSTAGLRYPVTIETETADLVDRWFAEITAVDLLPLAAADARAWLARLAAALVRAVS
CCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
AEPFRPEIGYDVGVRLVHGHVTSGEALGRTVRLFGRHLAHHTGGWARPADGPETSPAGTA
CCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
HPGAATATAAMGLAGGASAATGPAATATAAKGLAGRVPTGTATAAMGNSGAAAPGAGPSG
CCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCC
EGALLRRPPRADTLPGRVPAASTERVVDLLGELVRGHTETLRERTRDGQAAARRVDLGAR
CCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHCCCHH
ARAERERRISQTRLHAVLSGTALGMLVADRTGRIVEASDAALEILGLSGHTAPLAWPLPE
HHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEECCCCEEEEEECCCCCCCCCCCCHH
IVHPADREAVRWLWREARRGRSRGECRILRPDGTPTWVALTLSTTWPGVAGDWFGVAMLE
HCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEEEEEECCCCCCCCCHHHHHHHH
DITERRRLQEELRFHARHDPLTGLANRAEFLDRLQAVFREAPPSARVGLCYLDLDRFKMI
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHH
NEGFGYEVGDQLLAEVARRLGGMAVAERTVARMGGDEFMILVPDCGGLDEMTGIARRVLD
HCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHH
TLREPARVDGRDLPATCSIGVVEMAVADTSPSDLVAAADAALTWAKNGGKNRWTAFDPDR
HHCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHEECCCCCCCCCCCCCCCC
GTREAARGLMSRSMRPGLDRGEFSLAYQPIIDLRHGTVAGAEALLRWDHPRLGPTRPGEF
CHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCE
IALAEDSGFIVQLGLWVLERACETARDWPAHMFISVNLSARQLREPGLVGAVKKVLDRTG
EEEECCCCCEEHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHCCCCHHHHHHHHHHHCC
LPPRRLQLELTETVLMDSGGDQVTALHALNDLGVRIVIDDFGTGWSNFVYLSTMPVRGLK
CCHHHEEEEEHHHHEECCCCCCEEEEEHHHHCCEEEEEECCCCCCCCEEEEEECCCCCHH
LAGLFVEKLGRGTEPGRDDHLVEAIVEFARRLRLSVTAEGVEEPEQAAALRSFGADLGQG
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHCCCCCCC
HLFGEPVPADEFAATMLRRAFAAS
CCCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRKRYSTAGLRYPVTIETETADLVDRWFAEITAVDLLPLAAADARAWLARLAAALVRAVS
CCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
AEPFRPEIGYDVGVRLVHGHVTSGEALGRTVRLFGRHLAHHTGGWARPADGPETSPAGTA
CCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
HPGAATATAAMGLAGGASAATGPAATATAAKGLAGRVPTGTATAAMGNSGAAAPGAGPSG
CCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCC
EGALLRRPPRADTLPGRVPAASTERVVDLLGELVRGHTETLRERTRDGQAAARRVDLGAR
CCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHCCCHH
ARAERERRISQTRLHAVLSGTALGMLVADRTGRIVEASDAALEILGLSGHTAPLAWPLPE
HHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEECCCCEEEEEECCCCCCCCCCCCHH
IVHPADREAVRWLWREARRGRSRGECRILRPDGTPTWVALTLSTTWPGVAGDWFGVAMLE
HCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEEEEEECCCCCCCCCHHHHHHHH
DITERRRLQEELRFHARHDPLTGLANRAEFLDRLQAVFREAPPSARVGLCYLDLDRFKMI
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHH
NEGFGYEVGDQLLAEVARRLGGMAVAERTVARMGGDEFMILVPDCGGLDEMTGIARRVLD
HCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHH
TLREPARVDGRDLPATCSIGVVEMAVADTSPSDLVAAADAALTWAKNGGKNRWTAFDPDR
HHCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHEECCCCCCCCCCCCCCCC
GTREAARGLMSRSMRPGLDRGEFSLAYQPIIDLRHGTVAGAEALLRWDHPRLGPTRPGEF
CHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCE
IALAEDSGFIVQLGLWVLERACETARDWPAHMFISVNLSARQLREPGLVGAVKKVLDRTG
EEEECCCCCEEHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHCCCCHHHHHHHHHHHCC
LPPRRLQLELTETVLMDSGGDQVTALHALNDLGVRIVIDDFGTGWSNFVYLSTMPVRGLK
CCHHHEEEEEHHHHEECCCCCCEEEEEHHHHCCEEEEEECCCCCCCCEEEEEECCCCCHH
LAGLFVEKLGRGTEPGRDDHLVEAIVEFARRLRLSVTAEGVEEPEQAAALRSFGADLGQG
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHCCCCCCC
HLFGEPVPADEFAATMLRRAFAAS
CCCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]