| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is gsiB [H]
Identifier: 158318105
GI number: 158318105
Start: 7729228
End: 7730148
Strand: Reverse
Name: gsiB [H]
Synonym: Franean1_6369
Alternate gene names: 158318105
Gene position: 7730148-7729228 (Counterclockwise)
Preceding gene: 158318106
Following gene: 158318104
Centisome position: 86.06
GC content: 67.21
Gene sequence:
>921_bases ATGGCCGGCTGCATCTGGGGCGGCCTGCCCGTGCGTTTCTCGAACCTGCGCATCCTGGTCGCGGAGTCCGGCGGCTCCTG GCTCCCGCACTTCATCCAGCGGCTGGACTTCAACGTCGGCCACTCGCCGCTGACCAGCGCGGGCTGGCCCGACCCGGACC TGTCGCCGCTCGACCTGGTCCAACGGACGTTCACCTTCAGCACCCAGGAGCTCGACGTCGCCCGGGATCTGGAGAAGGAG CTGGGCATCACCGCCTGGATGATGGAGGACGACTACCCCCACATCGAGTCGGTCTGGCCCGACACGGCCGCCCAGTTCAC GCGGGCCACCGCCGGCTTCGACCCCGACTTCACCGAGCGGCTGGCGTGGCGGACCGGTTCGGAGCTCTTCCGCTTCCCGA TGCCGACGCCGCAGACCGAGACCGAAGCGGCAGACCCTCGCAACGCCTACGCGGTCAGCGCCGTACTGGGTAACGCCTTA TATGGGACCTTATTAAACGACGACAATTCCGGTGCGGTCCAGTACTCCATGGCCGAGTCGCTCGACATCCCCGACAACGG GACCACCTTCGAGCTGAAACTACGGTCTGGCCTGGTTTCCTCTGACGGCACTCCGCTGAATTCTGAGGCGGTGAAATTCA ACTGGAACCGCATCAAGGATCCGGCTACCGGGGCGTCAACCCGGGCGGAGGCCGGCCTGGTCTCCGCGACCGACGTCGTG GATGATCTCACGCTCAAGATAACGCTGTCCAAGCCCGTGCTGAGGTTCGCCGGCGCCATCACCGCGTCGCCCATGAACTG GATCGCCTCGCCGGCGGCGCTGCGCCTGGGCCAGACGGAGTTCGACAAGAAGCCGGTCGGCGCGCCCCGACGGCGATCGC CCCGCTGCCGGGCCCTGAGCTCAGCCCGACATCACCGGTGA
Upstream 100 bases:
>100_bases CCACACCGAGGGGCATTCCGCGTTCCCGAAGCGGGTCGGGAACGACTCCTATCCCTACGGTCTGCACCTGACTCTCTACC AGGCGGGAGTCATGGAGTTC
Downstream 100 bases:
>100_bases CGAGGAAGCGGTAGAAATGAGAACCGTAGGAATTGTGACGGGAGCCGGCCGTGGCATCGGCCTGGCGTGTGCCGAGCGCA TGGTCGACACGGTCGACTTA
Product: dipeptide ABC transporter periplasmic component-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 306; Mature: 305
Protein sequence:
>306_residues MAGCIWGGLPVRFSNLRILVAESGGSWLPHFIQRLDFNVGHSPLTSAGWPDPDLSPLDLVQRTFTFSTQELDVARDLEKE LGITAWMMEDDYPHIESVWPDTAAQFTRATAGFDPDFTERLAWRTGSELFRFPMPTPQTETEAADPRNAYAVSAVLGNAL YGTLLNDDNSGAVQYSMAESLDIPDNGTTFELKLRSGLVSSDGTPLNSEAVKFNWNRIKDPATGASTRAEAGLVSATDVV DDLTLKITLSKPVLRFAGAITASPMNWIASPAALRLGQTEFDKKPVGAPRRRSPRCRALSSARHHR
Sequences:
>Translated_306_residues MAGCIWGGLPVRFSNLRILVAESGGSWLPHFIQRLDFNVGHSPLTSAGWPDPDLSPLDLVQRTFTFSTQELDVARDLEKE LGITAWMMEDDYPHIESVWPDTAAQFTRATAGFDPDFTERLAWRTGSELFRFPMPTPQTETEAADPRNAYAVSAVLGNAL YGTLLNDDNSGAVQYSMAESLDIPDNGTTFELKLRSGLVSSDGTPLNSEAVKFNWNRIKDPATGASTRAEAGLVSATDVV DDLTLKITLSKPVLRFAGAITASPMNWIASPAALRLGQTEFDKKPVGAPRRRSPRCRALSSARHHR >Mature_305_residues AGCIWGGLPVRFSNLRILVAESGGSWLPHFIQRLDFNVGHSPLTSAGWPDPDLSPLDLVQRTFTFSTQELDVARDLEKEL GITAWMMEDDYPHIESVWPDTAAQFTRATAGFDPDFTERLAWRTGSELFRFPMPTPQTETEAADPRNAYAVSAVLGNALY GTLLNDDNSGAVQYSMAESLDIPDNGTTFELKLRSGLVSSDGTPLNSEAVKFNWNRIKDPATGASTRAEAGLVSATDVVD DLTLKITLSKPVLRFAGAITASPMNWIASPAALRLGQTEFDKKPVGAPRRRSPRCRALSSARHHR
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import [H]
COG id: COG0747
COG function: function code E; ABC-type dipeptide transport system, periplasmic component
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 5 family [H]
Homologues:
Organism=Escherichia coli, GI1787052, Length=144, Percent_Identity=34.7222222222222, Blast_Score=76, Evalue=2e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 33492; Mature: 33361
Theoretical pI: Translated: 5.19; Mature: 5.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGCIWGGLPVRFSNLRILVAESGGSWLPHFIQRLDFNVGHSPLTSAGWPDPDLSPLDLV CCCCEECCCCEEEECEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH QRTFTFSTQELDVARDLEKELGITAWMMEDDYPHIESVWPDTAAQFTRATAGFDPDFTER HHHHCCCHHHHHHHHHHHHHHCEEEEEECCCCCCHHHCCCHHHHHHHHHHCCCCCCHHHH LAWRTGSELFRFPMPTPQTETEAADPRNAYAVSAVLGNALYGTLLNDDNSGAVQYSMAES HHHCCCCHHEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEEECCCCCCEEEEEHHHC LDIPDNGTTFELKLRSGLVSSDGTPLNSEAVKFNWNRIKDPATGASTRAEAGLVSATDVV CCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEHHHCCCCCCCCCCHHHCCCCCHHHHH DDLTLKITLSKPVLRFAGAITASPMNWIASPAALRLGQTEFDKKPVGAPRRRSPRCRALS CCEEEEEEECCHHHHHHCCCCCCCHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHH SARHHR HHHCCC >Mature Secondary Structure AGCIWGGLPVRFSNLRILVAESGGSWLPHFIQRLDFNVGHSPLTSAGWPDPDLSPLDLV CCCEECCCCEEEECEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH QRTFTFSTQELDVARDLEKELGITAWMMEDDYPHIESVWPDTAAQFTRATAGFDPDFTER HHHHCCCHHHHHHHHHHHHHHCEEEEEECCCCCCHHHCCCHHHHHHHHHHCCCCCCHHHH LAWRTGSELFRFPMPTPQTETEAADPRNAYAVSAVLGNALYGTLLNDDNSGAVQYSMAES HHHCCCCHHEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEEECCCCCCEEEEEHHHC LDIPDNGTTFELKLRSGLVSSDGTPLNSEAVKFNWNRIKDPATGASTRAEAGLVSATDVV CCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEHHHCCCCCCCCCCHHHCCCCCHHHHH DDLTLKITLSKPVLRFAGAITASPMNWIASPAALRLGQTEFDKKPVGAPRRRSPRCRALS CCEEEEEEECCHHHHHHCCCCCCCHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHH SARHHR HHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA