| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is insG [H]
Identifier: 158318062
GI number: 158318062
Start: 7677440
End: 7678702
Strand: Reverse
Name: insG [H]
Synonym: Franean1_6322
Alternate gene names: 158318062
Gene position: 7678702-7677440 (Counterclockwise)
Preceding gene: 158318071
Following gene: 158318061
Centisome position: 85.49
GC content: 64.37
Gene sequence:
>1263_bases GTGGCGCGTCTCCCGGGGGCTCTTGAACTGCCCGCAGTTACCAGCGACCGACTGACAGATCGCATTTCTCTCGGCGTTCT CGCGCGTATCGTTCCTCGAGACCTGGTCGACGAGGTGCTCGCGGAGACGAGACGGCTGGAACAGCGGAAGAGGCTGCTAC CAGCGAGAGTCGTCGTGTATTTCACGATGGCCATGTGCCTGTTCTTCGACGACGACTACGACGAAGTGATGCGCAGGCTC GTGGGCACGCTGCGCTGGCTCGGCTCCTGGAAAGGAGACTGGAAGGTCCCCAGCACCGGAGCGATCTCCCAGGCCCGGAC ACGTCTCGGCCCGGAACCGTTGAAGCTGCTGTTCGAACGGGTCGCCGTGCCAGTCGCCGGCCTGGGCACGAAAGGCGCCT GGCTCGGCTCCCGCCGACTTGTCGCCGTGGACGGCGTCCACCTCGACACCGCGGACACCCCCGAGAACGCCGACGCGTTC GGCCGTTTCAGCCACGGACCGAAGACCGCCGCCTTTCCCCAGGTACACGTCGTCGCGCTCGCCGAATGCGGTACCCATGC GGTCTTCGCCGCCGCCATCGGCGCCTACACCAGCGACGAACGGTCGCTCGCTGCCACGCTGTTCGACGCCTGCGAGCCGG GCATGCTCCTCACCGCCGACCGCAACTTCTACGGCTACGGCCTGTGGCAACAGGCCCTCGCGACCGGTGCGGACCTGCTC TGGCGAGTCAACGCGAACCTCACGCTCCCCGTCATCCGAGCCCTGCCCGACGGCTCCTACCTCTCTCTCCTGATCGACCC CAAGATCCCCGTCGCCAGACGTGGCCAGCTCATCGCCGACGCCCGTGCCGGCCACGCCCCACCCACAGAGTCAGCCCTAC CAGTCCGAGTCATCGAGTACTCCGTACCAGACCACGAAGAAAACGGCACGAGCGAACTCATCTGTCTGATCACCAACATC CTCGACCCCACCGACGTGGCCGCCATCGAACTCGCGACCGCCTACCACGAACGATGGGAAATAGAAAGCACCTTCGATGA AATCAAAACGCACCAGCGAGGCGAGAAACGGGTCCTACGCTCCAAAAATCCCGAACTCGTCAAACAAGAGATCTGGGCCC TCCTGCTCACGCACTACGCCATACGAAGCCTCATGATCGAGGCCGCCGACGAGGCCGATATCGACCCCGACAGACTCTCC TTCATGAGAACACTACGGATCACACGCCGCCAGGTCACCGACCAGGCGGATTTTTCCCCCTGA
Upstream 100 bases:
>100_bases CGGACTATCATAGAATCGGCGCATTTCCCACGATGCGGAGCGCAGCTTCTACAACATGCGCCGACAGTTCGTTGATCCCG GACGTCGCTAGAATGCCGGT
Downstream 100 bases:
>100_bases CCGCCACACCCGCGCGTGGGAGCAGACCCGCACCGAGATCCTCGAACGGATCAACCCCGCCCGCCGCCACCGCACCTACC CGCGCGCTGTCCGACGAACC
Product: transposase IS4 family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 420; Mature: 419
Protein sequence:
>420_residues MARLPGALELPAVTSDRLTDRISLGVLARIVPRDLVDEVLAETRRLEQRKRLLPARVVVYFTMAMCLFFDDDYDEVMRRL VGTLRWLGSWKGDWKVPSTGAISQARTRLGPEPLKLLFERVAVPVAGLGTKGAWLGSRRLVAVDGVHLDTADTPENADAF GRFSHGPKTAAFPQVHVVALAECGTHAVFAAAIGAYTSDERSLAATLFDACEPGMLLTADRNFYGYGLWQQALATGADLL WRVNANLTLPVIRALPDGSYLSLLIDPKIPVARRGQLIADARAGHAPPTESALPVRVIEYSVPDHEENGTSELICLITNI LDPTDVAAIELATAYHERWEIESTFDEIKTHQRGEKRVLRSKNPELVKQEIWALLLTHYAIRSLMIEAADEADIDPDRLS FMRTLRITRRQVTDQADFSP
Sequences:
>Translated_420_residues MARLPGALELPAVTSDRLTDRISLGVLARIVPRDLVDEVLAETRRLEQRKRLLPARVVVYFTMAMCLFFDDDYDEVMRRL VGTLRWLGSWKGDWKVPSTGAISQARTRLGPEPLKLLFERVAVPVAGLGTKGAWLGSRRLVAVDGVHLDTADTPENADAF GRFSHGPKTAAFPQVHVVALAECGTHAVFAAAIGAYTSDERSLAATLFDACEPGMLLTADRNFYGYGLWQQALATGADLL WRVNANLTLPVIRALPDGSYLSLLIDPKIPVARRGQLIADARAGHAPPTESALPVRVIEYSVPDHEENGTSELICLITNI LDPTDVAAIELATAYHERWEIESTFDEIKTHQRGEKRVLRSKNPELVKQEIWALLLTHYAIRSLMIEAADEADIDPDRLS FMRTLRITRRQVTDQADFSP >Mature_419_residues ARLPGALELPAVTSDRLTDRISLGVLARIVPRDLVDEVLAETRRLEQRKRLLPARVVVYFTMAMCLFFDDDYDEVMRRLV GTLRWLGSWKGDWKVPSTGAISQARTRLGPEPLKLLFERVAVPVAGLGTKGAWLGSRRLVAVDGVHLDTADTPENADAFG RFSHGPKTAAFPQVHVVALAECGTHAVFAAAIGAYTSDERSLAATLFDACEPGMLLTADRNFYGYGLWQQALATGADLLW RVNANLTLPVIRALPDGSYLSLLIDPKIPVARRGQLIADARAGHAPPTESALPVRVIEYSVPDHEENGTSELICLITNIL DPTDVAAIELATAYHERWEIESTFDEIKTHQRGEKRVLRSKNPELVKQEIWALLLTHYAIRSLMIEAADEADIDPDRLSF MRTLRITRRQVTDQADFSP
Specific function: Involved in the transposition of the insertion sequence IS4 [H]
COG id: COG3385
COG function: function code L; FOG: Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase 11 family [H]
Homologues:
Organism=Escherichia coli, GI1790729, Length=390, Percent_Identity=28.974358974359, Blast_Score=141, Evalue=6e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012337 - InterPro: IPR002559 [H]
Pfam domain/function: PF01609 Transposase_11 [H]
EC number: NA
Molecular weight: Translated: 46551; Mature: 46420
Theoretical pI: Translated: 5.88; Mature: 5.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARLPGALELPAVTSDRLTDRISLGVLARIVPRDLVDEVLAETRRLEQRKRLLPARVVVY CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FTMAMCLFFDDDYDEVMRRLVGTLRWLGSWKGDWKVPSTGAISQARTRLGPEPLKLLFER HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH VAVPVAGLGTKGAWLGSRRLVAVDGVHLDTADTPENADAFGRFSHGPKTAAFPQVHVVAL HHCCCCCCCCCCCCCCCCEEEEECCEEECCCCCCCCCHHHCCCCCCCCCCCCCCEEEEEE AECGTHAVFAAAIGAYTSDERSLAATLFDACEPGMLLTADRNFYGYGLWQQALATGADLL HHCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEE WRVNANLTLPVIRALPDGSYLSLLIDPKIPVARRGQLIADARAGHAPPTESALPVRVIEY EEECCCCEEHHHHHCCCCCEEEEEECCCCCHHHCCCEEEECCCCCCCCCCCCCCEEEEEE SVPDHEENGTSELICLITNILDPTDVAAIELATAYHERWEIESTFDEIKTHQRGEKRVLR CCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHH SKNPELVKQEIWALLLTHYAIRSLMIEAADEADIDPDRLSFMRTLRITRRQVTDQADFSP CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure ARLPGALELPAVTSDRLTDRISLGVLARIVPRDLVDEVLAETRRLEQRKRLLPARVVVY CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FTMAMCLFFDDDYDEVMRRLVGTLRWLGSWKGDWKVPSTGAISQARTRLGPEPLKLLFER HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH VAVPVAGLGTKGAWLGSRRLVAVDGVHLDTADTPENADAFGRFSHGPKTAAFPQVHVVAL HHCCCCCCCCCCCCCCCCEEEEECCEEECCCCCCCCCHHHCCCCCCCCCCCCCCEEEEEE AECGTHAVFAAAIGAYTSDERSLAATLFDACEPGMLLTADRNFYGYGLWQQALATGADLL HHCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEE WRVNANLTLPVIRALPDGSYLSLLIDPKIPVARRGQLIADARAGHAPPTESALPVRVIEY EEECCCCEEHHHHHCCCCCEEEEEECCCCCHHHCCCEEEECCCCCCCCCCCCCCEEEEEE SVPDHEENGTSELICLITNILDPTDVAAIELATAYHERWEIESTFDEIKTHQRGEKRVLR CCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHH SKNPELVKQEIWALLLTHYAIRSLMIEAADEADIDPDRLSFMRTLRITRRQVTDQADFSP CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 6268937; 7610040; 9278503 [H]