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The map label for this gene is xerD [H]

Identifier: 158318020

GI number: 158318020

Start: 7627254

End: 7628261

Strand: Direct

Name: xerD [H]

Synonym: Franean1_6280

Alternate gene names: 158318020

Gene position: 7627254-7628261 (Clockwise)

Preceding gene: 158318019

Following gene: 158318021

Centisome position: 84.92

GC content: 74.11

Gene sequence:

>1008_bases
ATGATCGACCCTGCCGGAACCCTCGCCCCGGTTCCGTCCGTTGACCTCGACATCGTCGGTGCCCGGGACGCGAGCGTCTC
CGCGACCACCGCCCGCATGATCGACGACGCGACCGCAGCGAACACCAAGCGCGCGTACGCCAGACAGTGGTCGACCTTCA
CGGCCTGGTGTTCCCAGGAGGGCCGGACCATGCTCCCGTGCTCGGATGCCACGCTCGCCGAGTACGCGGCGCAGCTCGTC
ACCGCCGGGGCCGGGCCGGCCACCGTGGAACAGGCCATTGCCACCATCCGCCGGGTCCACCGCGACCAGGCCGCCACCCC
GCCCGACACCCGCGCCGCACGGCTAGTGCTGCGCACAGCCCGCCGGGAACGCGCCGACGCCGGGCAGGCCACCCGACAGG
CACCGCCAGCCGCGCTGGATCAGCTCCGCGCCATGCTCGCCGCCTGCGACACCAGCACCCGCGGAGTCCGTGACCGGGCC
CTGCTGCTGCTCGGCTTCGCGATGATGGGCCGCCGTTCGGAGCTCGCCGCGCTCGACCTGGCCGACATCCGCGAGGTCGA
CGAGGGCCTGATCGTCGTCGTCCGCCGGTCGAAGACCGACCAAGACGGCCGCGGCGCCGAGGTCGCCGTTCCCTACGGCA
GCCGGCCGGACTCGTGCCCTGTGCGCGCGGTCCGGGCCTGGCGCGGCTGGCTCGCCTCCATCGGCATCACCGAGGGCCGA
CTGTTCCGTTCCGTAACGAGGCACGGCCACATCGGCGAGGCCATGTCCGGCGACGGGATCCGCCGAGCCGTCCGCGCCGC
CGCCGTCCGGGCCGGCCTCCCGAACGCGGACGTCTTCTCGGCTCACTCGCTGCGGGCTGGAGGGGCGACAGCCGCGGCGA
AGGCCGGCGCCCCGGTCGCCGCGATCGCCCGGCAAGGCCGCTGGTCACCCACCTCGCCCGTGGTGCACTCGTACATCCGG
GCAGCCGACCGATGGCGGGACAACCCGATGGCCAGTGTGGGCCTGTGA

Upstream 100 bases:

>100_bases
CTGTAACGGTCTGTCGTGGTCGGTCACGGTCATATTCCTGTATCGCGATAATATGCCTTATCGCGATACAGGATCCTTGA
TCGACAGGCGGTAAGCAAGC

Downstream 100 bases:

>100_bases
AGGACGCGGACCTGTATCGAACGCTTGTCCGAACGGCCTCCACGGGTACCGTGGCGCCCTACTCGGGGGTACACATGCGG
ACACACCTCACACCTGGCAC

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MIDPAGTLAPVPSVDLDIVGARDASVSATTARMIDDATAANTKRAYARQWSTFTAWCSQEGRTMLPCSDATLAEYAAQLV
TAGAGPATVEQAIATIRRVHRDQAATPPDTRAARLVLRTARRERADAGQATRQAPPAALDQLRAMLAACDTSTRGVRDRA
LLLLGFAMMGRRSELAALDLADIREVDEGLIVVVRRSKTDQDGRGAEVAVPYGSRPDSCPVRAVRAWRGWLASIGITEGR
LFRSVTRHGHIGEAMSGDGIRRAVRAAAVRAGLPNADVFSAHSLRAGGATAAAKAGAPVAAIARQGRWSPTSPVVHSYIR
AADRWRDNPMASVGL

Sequences:

>Translated_335_residues
MIDPAGTLAPVPSVDLDIVGARDASVSATTARMIDDATAANTKRAYARQWSTFTAWCSQEGRTMLPCSDATLAEYAAQLV
TAGAGPATVEQAIATIRRVHRDQAATPPDTRAARLVLRTARRERADAGQATRQAPPAALDQLRAMLAACDTSTRGVRDRA
LLLLGFAMMGRRSELAALDLADIREVDEGLIVVVRRSKTDQDGRGAEVAVPYGSRPDSCPVRAVRAWRGWLASIGITEGR
LFRSVTRHGHIGEAMSGDGIRRAVRAAAVRAGLPNADVFSAHSLRAGGATAAAKAGAPVAAIARQGRWSPTSPVVHSYIR
AADRWRDNPMASVGL
>Mature_335_residues
MIDPAGTLAPVPSVDLDIVGARDASVSATTARMIDDATAANTKRAYARQWSTFTAWCSQEGRTMLPCSDATLAEYAAQLV
TAGAGPATVEQAIATIRRVHRDQAATPPDTRAARLVLRTARRERADAGQATRQAPPAALDQLRAMLAACDTSTRGVRDRA
LLLLGFAMMGRRSELAALDLADIREVDEGLIVVVRRSKTDQDGRGAEVAVPYGSRPDSCPVRAVRAWRGWLASIGITEGR
LFRSVTRHGHIGEAMSGDGIRRAVRAAAVRAGLPNADVFSAHSLRAGGATAAAKAGAPVAAIARQGRWSPTSPVVHSYIR
AADRWRDNPMASVGL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 35476; Mature: 35476

Theoretical pI: Translated: 11.06; Mature: 11.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDPAGTLAPVPSVDLDIVGARDASVSATTARMIDDATAANTKRAYARQWSTFTAWCSQE
CCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GRTMLPCSDATLAEYAAQLVTAGAGPATVEQAIATIRRVHRDQAATPPDTRAARLVLRTA
CCEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
RRERADAGQATRQAPPAALDQLRAMLAACDTSTRGVRDRALLLLGFAMMGRRSELAALDL
HHHHHHHCHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHH
ADIREVDEGLIVVVRRSKTDQDGRGAEVAVPYGSRPDSCPVRAVRAWRGWLASIGITEGR
HHHHHHCCCEEEEEECCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHH
LFRSVTRHGHIGEAMSGDGIRRAVRAAAVRAGLPNADVFSAHSLRAGGATAAAKAGAPVA
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCHHHHHCCCCHH
AIARQGRWSPTSPVVHSYIRAADRWRDNPMASVGL
HHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHCCC
>Mature Secondary Structure
MIDPAGTLAPVPSVDLDIVGARDASVSATTARMIDDATAANTKRAYARQWSTFTAWCSQE
CCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GRTMLPCSDATLAEYAAQLVTAGAGPATVEQAIATIRRVHRDQAATPPDTRAARLVLRTA
CCEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
RRERADAGQATRQAPPAALDQLRAMLAACDTSTRGVRDRALLLLGFAMMGRRSELAALDL
HHHHHHHCHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHH
ADIREVDEGLIVVVRRSKTDQDGRGAEVAVPYGSRPDSCPVRAVRAWRGWLASIGITEGR
HHHHHHCCCEEEEEECCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHH
LFRSVTRHGHIGEAMSGDGIRRAVRAAAVRAGLPNADVFSAHSLRAGGATAAAKAGAPVA
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCHHHHHCCCCHH
AIARQGRWSPTSPVVHSYIRAADRWRDNPMASVGL
HHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11073919 [H]