| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is echA8 [H]
Identifier: 158317998
GI number: 158317998
Start: 7600429
End: 7601226
Strand: Direct
Name: echA8 [H]
Synonym: Franean1_6258
Alternate gene names: 158317998
Gene position: 7600429-7601226 (Clockwise)
Preceding gene: 158317997
Following gene: 158317999
Centisome position: 84.62
GC content: 71.43
Gene sequence:
>798_bases ATGACCGATGACCTGGGAGCGGCGGGCCTGCGTTTCGAGCGCGACGGAGCCATCGGCTGGTGTGTGATCGACCGGCCGGC CGCCCGGAACGCCCTGACACCAGCGATGTACTTCGGCATCAAGCGGGCCGTGCAACTGGTCAACACCTCGCCCGACCTGG CCGCACTGATCATCACCGGCACCGGTGACGTGTTCGCCCCCGGCGGCGACCTCGGCAGCAGGTCCGAGCCCGGCGACAAC CTGCCGCCCGACCTGCGCGGCGAGGACGTCCTGCCGTTCCTCACCATCCGGGACAGCCGGGCGCCGGTGGTGGCCGCCGT CAACGGCATCTGCCAGGCCGGTGGCCTGCTGATCGCCATGATGGCGGACATCGCGGTCGCCAGCGACCAGGCGACGTTCC GGGTCCCCGAGCTGCTGCGGGGCATCCCCGACGCCACCTATGCGGCCGTTCTGCCCGCCCACGTCGGCATCGCGGTGGCC CGTGACCTGCTGTTGTCGGCGCGCCGCTTCGACGCCGCCGAGGCCCAGCGGCTGGGCGTGATCAGCCGAGTCGTGCCGCA CGACCAGCTCCGCGAGGCCGCCGTCCAGGCCGCCGGGGAGATTCTGCAGACCGCCCCGGCGGCCCGCATGCATGTCAAGC GCATGCTGAACGAGCGCTATGGGCTCATCGACTACCAGACCATGTTCTGGGCGATGCAGCAGTCGCCCGAGCCACGTGAG GGCATGCGCGCGTTCATGGAGAAGCGGGCGCCTGAATGGGTCCCCGAGCAGTTCGCCGGCGACGGCGGGCGGCGCTGA
Upstream 100 bases:
>100_bases CGCGAACAGTGGCGCCGAATCGCCGCCGCCGTGTGATCGCACCGCCGGGCGACGCCCTGGCATGCCATCATCGCGAGCGG CGGCACGAGGGAGGAGCAGC
Downstream 100 bases:
>100_bases CCTCACACCCGTTCCGCCAGCTGAGAGGTTTGCGGCCCGGGACTTCCAGTGCGCGATACCTGGGCTGCCCCAGATGCCGG GCAGCCCAGGATGCCGCGCG
Product: enoyl-CoA hydratase/isomerase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 265; Mature: 264
Protein sequence:
>265_residues MTDDLGAAGLRFERDGAIGWCVIDRPAARNALTPAMYFGIKRAVQLVNTSPDLAALIITGTGDVFAPGGDLGSRSEPGDN LPPDLRGEDVLPFLTIRDSRAPVVAAVNGICQAGGLLIAMMADIAVASDQATFRVPELLRGIPDATYAAVLPAHVGIAVA RDLLLSARRFDAAEAQRLGVISRVVPHDQLREAAVQAAGEILQTAPAARMHVKRMLNERYGLIDYQTMFWAMQQSPEPRE GMRAFMEKRAPEWVPEQFAGDGGRR
Sequences:
>Translated_265_residues MTDDLGAAGLRFERDGAIGWCVIDRPAARNALTPAMYFGIKRAVQLVNTSPDLAALIITGTGDVFAPGGDLGSRSEPGDN LPPDLRGEDVLPFLTIRDSRAPVVAAVNGICQAGGLLIAMMADIAVASDQATFRVPELLRGIPDATYAAVLPAHVGIAVA RDLLLSARRFDAAEAQRLGVISRVVPHDQLREAAVQAAGEILQTAPAARMHVKRMLNERYGLIDYQTMFWAMQQSPEPRE GMRAFMEKRAPEWVPEQFAGDGGRR >Mature_264_residues TDDLGAAGLRFERDGAIGWCVIDRPAARNALTPAMYFGIKRAVQLVNTSPDLAALIITGTGDVFAPGGDLGSRSEPGDNL PPDLRGEDVLPFLTIRDSRAPVVAAVNGICQAGGLLIAMMADIAVASDQATFRVPELLRGIPDATYAAVLPAHVGIAVAR DLLLSARRFDAAEAQRLGVISRVVPHDQLREAAVQAAGEILQTAPAARMHVKRMLNERYGLIDYQTMFWAMQQSPEPREG MRAFMEKRAPEWVPEQFAGDGGRR
Specific function: Could possibly oxidize fatty acids using specific components [H]
COG id: COG1024
COG function: function code I; Enoyl-CoA hydratase/carnithine racemase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the enoyl-CoA hydratase/isomerase family [H]
Homologues:
Organism=Homo sapiens, GI194097323, Length=268, Percent_Identity=29.1044776119403, Blast_Score=108, Evalue=6e-24, Organism=Homo sapiens, GI31542718, Length=245, Percent_Identity=30.2040816326531, Blast_Score=92, Evalue=5e-19, Organism=Homo sapiens, GI68989263, Length=168, Percent_Identity=32.1428571428571, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI4502327, Length=254, Percent_Identity=27.5590551181102, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI70995211, Length=209, Percent_Identity=29.1866028708134, Blast_Score=65, Evalue=5e-11, Organism=Escherichia coli, GI1787659, Length=253, Percent_Identity=30.4347826086957, Blast_Score=108, Evalue=4e-25, Organism=Escherichia coli, GI221142681, Length=256, Percent_Identity=32.03125, Blast_Score=101, Evalue=6e-23, Organism=Escherichia coli, GI1788597, Length=261, Percent_Identity=32.183908045977, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI87082183, Length=241, Percent_Identity=26.5560165975104, Blast_Score=66, Evalue=2e-12, Organism=Caenorhabditis elegans, GI25145438, Length=258, Percent_Identity=32.9457364341085, Blast_Score=115, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17554946, Length=238, Percent_Identity=30.672268907563, Blast_Score=115, Evalue=3e-26, Organism=Caenorhabditis elegans, GI17535521, Length=264, Percent_Identity=24.6212121212121, Blast_Score=85, Evalue=5e-17, Organism=Caenorhabditis elegans, GI17560910, Length=248, Percent_Identity=25.8064516129032, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17536985, Length=254, Percent_Identity=28.3464566929134, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17534483, Length=210, Percent_Identity=29.5238095238095, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17558304, Length=210, Percent_Identity=28.0952380952381, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17540306, Length=193, Percent_Identity=28.4974093264249, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17540714, Length=214, Percent_Identity=28.0373831775701, Blast_Score=67, Evalue=9e-12, Organism=Caenorhabditis elegans, GI25144276, Length=210, Percent_Identity=27.1428571428571, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17508953, Length=210, Percent_Identity=27.1428571428571, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17508951, Length=210, Percent_Identity=27.1428571428571, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI20129971, Length=246, Percent_Identity=31.3008130081301, Blast_Score=113, Evalue=1e-25, Organism=Drosophila melanogaster, GI24653477, Length=246, Percent_Identity=31.3008130081301, Blast_Score=113, Evalue=1e-25, Organism=Drosophila melanogaster, GI24653139, Length=261, Percent_Identity=28.3524904214559, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI19920382, Length=209, Percent_Identity=29.6650717703349, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI21357171, Length=182, Percent_Identity=31.8681318681319, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24650670, Length=203, Percent_Identity=29.5566502463054, Blast_Score=68, Evalue=7e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001753 - InterPro: IPR018376 [H]
Pfam domain/function: PF00378 ECH [H]
EC number: =4.2.1.17 [H]
Molecular weight: Translated: 28541; Mature: 28410
Theoretical pI: Translated: 5.40; Mature: 5.40
Prosite motif: PS00166 ENOYL_COA_HYDRATASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDDLGAAGLRFERDGAIGWCVIDRPAARNALTPAMYFGIKRAVQLVNTSPDLAALIITG CCCCCCCCCCEEECCCCEEEEEECCCHHCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEC TGDVFAPGGDLGSRSEPGDNLPPDLRGEDVLPFLTIRDSRAPVVAAVNGICQAGGLLIAM CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHH MADIAVASDQATFRVPELLRGIPDATYAAVLPAHVGIAVARDLLLSARRFDAAEAQRLGV HHHHHHCCCCCCEEHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH ISRVVPHDQLREAAVQAAGEILQTAPAARMHVKRMLNERYGLIDYQTMFWAMQQSPEPRE HHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHH GMRAFMEKRAPEWVPEQFAGDGGRR HHHHHHHHCCCCCCCHHHCCCCCCC >Mature Secondary Structure TDDLGAAGLRFERDGAIGWCVIDRPAARNALTPAMYFGIKRAVQLVNTSPDLAALIITG CCCCCCCCCEEECCCCEEEEEECCCHHCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEC TGDVFAPGGDLGSRSEPGDNLPPDLRGEDVLPFLTIRDSRAPVVAAVNGICQAGGLLIAM CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHH MADIAVASDQATFRVPELLRGIPDATYAAVLPAHVGIAVARDLLLSARRFDAAEAQRLGV HHHHHHCCCCCCEEHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH ISRVVPHDQLREAAVQAAGEILQTAPAARMHVKRMLNERYGLIDYQTMFWAMQQSPEPRE HHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHH GMRAFMEKRAPEWVPEQFAGDGGRR HHHHHHHHCCCCCCCHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12788972 [H]