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The map label for this gene is yciR [C]

Identifier: 158317999

GI number: 158317999

Start: 7601591

End: 7602847

Strand: Direct

Name: yciR [C]

Synonym: Franean1_6259

Alternate gene names: 158317999

Gene position: 7601591-7602847 (Clockwise)

Preceding gene: 158317998

Following gene: 158318000

Centisome position: 84.63

GC content: 74.62

Gene sequence:

>1257_bases
GTGATCACCGACGACGTGGCCGCCGCGGTCCTCGACTCGTTACCGTCACGCATCGCCGTACTGGGACCAGATGGAATGGT
GGTGCGGCTCAACGACGCGTGGCGGCGCAGCGCCGCGGCCGGGCTGGCGGTCGTCCCCGTCCGCCCCGGGGCGAGCTGGC
TGGCCGCCTGCGAGGCAGCCGGGCGGAGCACGGAACCGCTGCGGACACTGGCCGGGCTGACCCGCCGGATGCTGGACAAC
CGCCGCGACCAGGTCCGCGTCGAGATCCCGCTGGCCACCCCGCGCGGCGAGCGCTGGCTGGACGTCCGGATCAGGGCGCT
CAGCCGCGGCGACGGGCTGGTCGTCGTGGTGGACGACGTCACCGATCGCCACGACCGGGAGGCCGTGCTGCGCCACCGGG
CGACCCACGACCCGGTGACGGGGCTCCCGAACCGCTCGGCTCTCCGTGATCTGATCGCCGAGGCGCTGGCCGCGCCGCCG
ACCGTCGGTTCCGGCCAGATGGCACCCCCCGGGGTAACCAGGAACAGCGGCCGGCGAACATCATCCGAACGGGCGGGCGT
CGCCGGCTTCGAGGCGTGGACGGTACCCGTTCGGACCGGTCGGCCAGACCCGGCGGAGCCGCCGACGGCCGATCGCACCG
CGGGGGTCGAGGGAAATGAAGCCGAAGCGACCCCTCTCGGGGCCGGGGCCGCGGGGGTGGAGGCCGAGGGCACCGGGGGC
ACCGGGGGCACGGCCGAGGGCACCGGAGTTGCGGTCCTTTTCCTCGATCTCGACGCCTTCGGGCGCGTCAACCAGCGGTT
CGGCTACGCGGTCGGCGACGGGACGCTGCGCGCGGTCGCGCTCCGGTTCGCCGAGGTGCTCGGGCCCGGCGCGGTGCTGG
GTCGCTGGGGCGGGGACGAGTTCGTCGTCGTGACGACCGAGGTGACCGGCCATGCGGCGGTGGCACTGGCCGACCGGCTG
ACCTCCTGCCTCGTCGACCCACTGGTCGTGGACGACCACCGGGTCCGGGTAACGGCCAGCGTCGGGATCGCGTTCGGTGG
AGGGCTCCGATCGGGTCATGGCGAGGTCGCGCCGCTCGGCGCCGACCACGCCGCGGGCCTCGGCACCCCACCGGCCCCGG
TTCACCGGCCGCTGGACGGCGATGCGCTGGTGAGGATGGCCGGCGAGGAGATCGTGAAGGCGCGCTCCCGGGCCCGCGAG
ACCCGTCGCGGCCGCAGCCGCCGCCAGAATCGCTCGAAATCAGGCGACTCTTCTTAA

Upstream 100 bases:

>100_bases
CGGTCGGGCCGTCGGCGGTGATCCCGCGCGCGGCTGCCGGAGGAAATGGAGAACCTGGCGCAGCCGCGGCTTCGACGTCC
CGAGAGGGGAATCAGAATCG

Downstream 100 bases:

>100_bases
GAAGTTACAGAGAGCACACTGTCGACTTCGACTTGTATCGTGCCCGCCATGTGGATCACTATCGATGTCGCGGGCGTCGC
GGACACGTCCCCTCGGGCGC

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 418; Mature: 418

Protein sequence:

>418_residues
MITDDVAAAVLDSLPSRIAVLGPDGMVVRLNDAWRRSAAAGLAVVPVRPGASWLAACEAAGRSTEPLRTLAGLTRRMLDN
RRDQVRVEIPLATPRGERWLDVRIRALSRGDGLVVVVDDVTDRHDREAVLRHRATHDPVTGLPNRSALRDLIAEALAAPP
TVGSGQMAPPGVTRNSGRRTSSERAGVAGFEAWTVPVRTGRPDPAEPPTADRTAGVEGNEAEATPLGAGAAGVEAEGTGG
TGGTAEGTGVAVLFLDLDAFGRVNQRFGYAVGDGTLRAVALRFAEVLGPGAVLGRWGGDEFVVVTTEVTGHAAVALADRL
TSCLVDPLVVDDHRVRVTASVGIAFGGGLRSGHGEVAPLGADHAAGLGTPPAPVHRPLDGDALVRMAGEEIVKARSRARE
TRRGRSRRQNRSKSGDSS

Sequences:

>Translated_418_residues
MITDDVAAAVLDSLPSRIAVLGPDGMVVRLNDAWRRSAAAGLAVVPVRPGASWLAACEAAGRSTEPLRTLAGLTRRMLDN
RRDQVRVEIPLATPRGERWLDVRIRALSRGDGLVVVVDDVTDRHDREAVLRHRATHDPVTGLPNRSALRDLIAEALAAPP
TVGSGQMAPPGVTRNSGRRTSSERAGVAGFEAWTVPVRTGRPDPAEPPTADRTAGVEGNEAEATPLGAGAAGVEAEGTGG
TGGTAEGTGVAVLFLDLDAFGRVNQRFGYAVGDGTLRAVALRFAEVLGPGAVLGRWGGDEFVVVTTEVTGHAAVALADRL
TSCLVDPLVVDDHRVRVTASVGIAFGGGLRSGHGEVAPLGADHAAGLGTPPAPVHRPLDGDALVRMAGEEIVKARSRARE
TRRGRSRRQNRSKSGDSS
>Mature_418_residues
MITDDVAAAVLDSLPSRIAVLGPDGMVVRLNDAWRRSAAAGLAVVPVRPGASWLAACEAAGRSTEPLRTLAGLTRRMLDN
RRDQVRVEIPLATPRGERWLDVRIRALSRGDGLVVVVDDVTDRHDREAVLRHRATHDPVTGLPNRSALRDLIAEALAAPP
TVGSGQMAPPGVTRNSGRRTSSERAGVAGFEAWTVPVRTGRPDPAEPPTADRTAGVEGNEAEATPLGAGAAGVEAEGTGG
TGGTAEGTGVAVLFLDLDAFGRVNQRFGYAVGDGTLRAVALRFAEVLGPGAVLGRWGGDEFVVVTTEVTGHAAVALADRL
TSCLVDPLVVDDHRVRVTASVGIAFGGGLRSGHGEVAPLGADHAAGLGTPPAPVHRPLDGDALVRMAGEEIVKARSRARE
TRRGRSRRQNRSKSGDSS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=102, Percent_Identity=38.2352941176471, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 43511; Mature: 43511

Theoretical pI: Translated: 8.30; Mature: 8.30

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITDDVAAAVLDSLPSRIAVLGPDGMVVRLNDAWRRSAAAGLAVVPVRPGASWLAACEAA
CCCHHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHHCCEEEEEECCCHHHHHHHHHC
GRSTEPLRTLAGLTRRMLDNRRDQVRVEIPLATPRGERWLDVRIRALSRGDGLVVVVDDV
CCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEECCC
TDRHDREAVLRHRATHDPVTGLPNRSALRDLIAEALAAPPTVGSGQMAPPGVTRNSGRRT
CCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
SSERAGVAGFEAWTVPVRTGRPDPAEPPTADRTAGVEGNEAEATPLGAGAAGVEAEGTGG
CCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TGGTAEGTGVAVLFLDLDAFGRVNQRFGYAVGDGTLRAVALRFAEVLGPGAVLGRWGGDE
CCCCCCCCCEEEEEEECCHHCCHHHHCCEEECCCHHHHHHHHHHHHHCCCCEEECCCCCE
FVVVTTEVTGHAAVALADRLTSCLVDPLVVDDHRVRVTASVGIAFGGGLRSGHGEVAPLG
EEEEEEECCCCHHHHHHHHHHHHHHCCEEECCCEEEEEEEEEEEECCCCCCCCCCCCCCC
ADHAAGLGTPPAPVHRPLDGDALVRMAGEEIVKARSRARETRRGRSRRQNRSKSGDSS
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MITDDVAAAVLDSLPSRIAVLGPDGMVVRLNDAWRRSAAAGLAVVPVRPGASWLAACEAA
CCCHHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHHCCEEEEEECCCHHHHHHHHHC
GRSTEPLRTLAGLTRRMLDNRRDQVRVEIPLATPRGERWLDVRIRALSRGDGLVVVVDDV
CCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEECCC
TDRHDREAVLRHRATHDPVTGLPNRSALRDLIAEALAAPPTVGSGQMAPPGVTRNSGRRT
CCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
SSERAGVAGFEAWTVPVRTGRPDPAEPPTADRTAGVEGNEAEATPLGAGAAGVEAEGTGG
CCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TGGTAEGTGVAVLFLDLDAFGRVNQRFGYAVGDGTLRAVALRFAEVLGPGAVLGRWGGDE
CCCCCCCCCEEEEEEECCHHCCHHHHCCEEECCCHHHHHHHHHHHHHCCCCEEECCCCCE
FVVVTTEVTGHAAVALADRLTSCLVDPLVVDDHRVRVTASVGIAFGGGLRSGHGEVAPLG
EEEEEEECCCCHHHHHHHHHHHHHHCCEEECCCEEEEEEEEEEEECCCCCCCCCCCCCCC
ADHAAGLGTPPAPVHRPLDGDALVRMAGEEIVKARSRARETRRGRSRRQNRSKSGDSS
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]