| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is yhbW [C]
Identifier: 158317979
GI number: 158317979
Start: 7576226
End: 7577434
Strand: Reverse
Name: yhbW [C]
Synonym: Franean1_6239
Alternate gene names: 158317979
Gene position: 7577434-7576226 (Counterclockwise)
Preceding gene: 158317985
Following gene: 158317978
Centisome position: 84.36
GC content: 67.91
Gene sequence:
>1209_bases ATGGTGGTCACTGTACCAACCATGCCGTTTGCTATAACAAACGAGGCCGCCGTGAAACTGGATCTGCTGTACGAGGTGGA CGTCCCGAAGCCGTGGTCGAAGCCCCACCCCCACGGGCAGCGCGAGGCCGAGCAGGCCGCCTACCGCGAGGCCATCGCCC AGATCCGCCTTGCCGACGAGATGGGTTTCCACACCTCCTGGCACGTGGAGCACCACTTCCGTGAGGGGCGGTCCCACTGC TCGGCGCCCGAGGTCCTCATCGGGGCGCTCTCGCAGGTCACCGAACGGATCCGGCTCGGCTTCGGGGTGACACTGCTGCC GCACGCGTTCACGTCACCTGTGCGGGTGGCCGAGAAGGTCGCCACGGCCGACGTCCTGAGTAATGGGCGCGTCGAATGGG GGACGGGCCGCTCGACCCCCATGGAACAGACCGCTTTCGGTGTCGACATCCCGCAGAGCAAGGATCAGGTGCGTGAGGCG ATCCAGGCCATTGTCGAGGCCTGGGAATCCGAATACTTCTCGTTCGAGGGAAAACACTGGCGATTCCCCGCGGCGGGCGA CGTCCCCGTCCGCATGGTCACCCCCAAGCCGGTGCAGGATCCGCACCCACCCTGCTGGATGGCGGCGTCGAGCACGGGCA GCGCCCAGGCCGCCGGCGCCATGGGCCTCGGCCTGCTCTCACTGTCGATCATGCGGCCGCTGGAGCAGATGGCGGAGACC ATCCAGCTCTACCGGCGGGCCGCCGCCGCCGCGCGGCCGATCACCCGCGTGGCCAACAACCGCGTGGCGGCATACACGCT GGTCCACTGCGCGGACACGATGGCCCAGGCCGAGGCGAACGGGATCTGGGACGCCACCTGGTGGTGGTACAGGAACCTGG CCGAGTTCACGCTGGAGTGGGAGTTCCCGCACGCCTCCGAGCAGGAGCGGGAGAAGATGTTCCCGATCCTCGAGCAGCGG CGGAACGCGCCGCCGGATCCGAGGCAGTTCAGCGACGCCGACATGATCATCGTTGGTGATCCCGACGAGTGCCTGCGCAA GATGCTCCGCTACGCCGAGCTCGGGGTCGACCGGCTGCTCTGCTACGTGCAGTTCGGCCGGCTGTCCCACGAGGCCGTGA TGCGCACCATCGAGCTCCTCGGCACCCACGTCATCCCCGAGCTCGAACGTCGCGAGGTCCAGGTCTCGACCTCGGTGACC GCCACCTGA
Upstream 100 bases:
>100_bases GTAACGACCTGGGAGCGGGGGTGTCAACCGGCTGGGTTAGGGCTGGAGTTCGGGTCGATCTGTCTCCGGCGACCCCGTTG ACATCGACGGAGCGGCGCTT
Downstream 100 bases:
>100_bases TCCCGCCGATCCCGATCGCAGGCAGCGGCAGAGACGGAGACAGGAACGATGACACGGTTGGATGAATCGGCGATCCCCGA CTACCCCGGGCTGCTGCGCC
Product: luciferase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 402; Mature: 402
Protein sequence:
>402_residues MVVTVPTMPFAITNEAAVKLDLLYEVDVPKPWSKPHPHGQREAEQAAYREAIAQIRLADEMGFHTSWHVEHHFREGRSHC SAPEVLIGALSQVTERIRLGFGVTLLPHAFTSPVRVAEKVATADVLSNGRVEWGTGRSTPMEQTAFGVDIPQSKDQVREA IQAIVEAWESEYFSFEGKHWRFPAAGDVPVRMVTPKPVQDPHPPCWMAASSTGSAQAAGAMGLGLLSLSIMRPLEQMAET IQLYRRAAAAARPITRVANNRVAAYTLVHCADTMAQAEANGIWDATWWWYRNLAEFTLEWEFPHASEQEREKMFPILEQR RNAPPDPRQFSDADMIIVGDPDECLRKMLRYAELGVDRLLCYVQFGRLSHEAVMRTIELLGTHVIPELERREVQVSTSVT AT
Sequences:
>Translated_402_residues MVVTVPTMPFAITNEAAVKLDLLYEVDVPKPWSKPHPHGQREAEQAAYREAIAQIRLADEMGFHTSWHVEHHFREGRSHC SAPEVLIGALSQVTERIRLGFGVTLLPHAFTSPVRVAEKVATADVLSNGRVEWGTGRSTPMEQTAFGVDIPQSKDQVREA IQAIVEAWESEYFSFEGKHWRFPAAGDVPVRMVTPKPVQDPHPPCWMAASSTGSAQAAGAMGLGLLSLSIMRPLEQMAET IQLYRRAAAAARPITRVANNRVAAYTLVHCADTMAQAEANGIWDATWWWYRNLAEFTLEWEFPHASEQEREKMFPILEQR RNAPPDPRQFSDADMIIVGDPDECLRKMLRYAELGVDRLLCYVQFGRLSHEAVMRTIELLGTHVIPELERREVQVSTSVT AT >Mature_402_residues MVVTVPTMPFAITNEAAVKLDLLYEVDVPKPWSKPHPHGQREAEQAAYREAIAQIRLADEMGFHTSWHVEHHFREGRSHC SAPEVLIGALSQVTERIRLGFGVTLLPHAFTSPVRVAEKVATADVLSNGRVEWGTGRSTPMEQTAFGVDIPQSKDQVREA IQAIVEAWESEYFSFEGKHWRFPAAGDVPVRMVTPKPVQDPHPPCWMAASSTGSAQAAGAMGLGLLSLSIMRPLEQMAET IQLYRRAAAAARPITRVANNRVAAYTLVHCADTMAQAEANGIWDATWWWYRNLAEFTLEWEFPHASEQEREKMFPILEQR RNAPPDPRQFSDADMIIVGDPDECLRKMLRYAELGVDRLLCYVQFGRLSHEAVMRTIELLGTHVIPELERREVQVSTSVT AT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial luciferase oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI1789551, Length=237, Percent_Identity=29.1139240506329, Blast_Score=74, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011251 - InterPro: IPR016048 [H]
Pfam domain/function: PF00296 Bac_luciferase [H]
EC number: NA
Molecular weight: Translated: 45130; Mature: 45130
Theoretical pI: Translated: 6.03; Mature: 6.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVVTVPTMPFAITNEAAVKLDLLYEVDVPKPWSKPHPHGQREAEQAAYREAIAQIRLADE CEEEECCCCEEECCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH MGFHTSWHVEHHFREGRSHCSAPEVLIGALSQVTERIRLGFGVTLLPHAFTSPVRVAEKV CCCCCEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEECCHHHCCHHHHHHHH ATADVLSNGRVEWGTGRSTPMEQTAFGVDIPQSKDQVREAIQAIVEAWESEYFSFEGKHW HHHHHHHCCCEEECCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEE RFPAAGDVPVRMVTPKPVQDPHPPCWMAASSTGSAQAAGAMGLGLLSLSIMRPLEQMAET ECCCCCCCCEEEECCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH IQLYRRAAAAARPITRVANNRVAAYTLVHCADTMAQAEANGIWDATWWWYRNLAEFTLEW HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEEEEE EFPHASEQEREKMFPILEQRRNAPPDPRQFSDADMIIVGDPDECLRKMLRYAELGVDRLL CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCHHHHH CYVQFGRLSHEAVMRTIELLGTHVIPELERREVQVSTSVTAT HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCC >Mature Secondary Structure MVVTVPTMPFAITNEAAVKLDLLYEVDVPKPWSKPHPHGQREAEQAAYREAIAQIRLADE CEEEECCCCEEECCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH MGFHTSWHVEHHFREGRSHCSAPEVLIGALSQVTERIRLGFGVTLLPHAFTSPVRVAEKV CCCCCEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEECCHHHCCHHHHHHHH ATADVLSNGRVEWGTGRSTPMEQTAFGVDIPQSKDQVREAIQAIVEAWESEYFSFEGKHW HHHHHHHCCCEEECCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEE RFPAAGDVPVRMVTPKPVQDPHPPCWMAASSTGSAQAAGAMGLGLLSLSIMRPLEQMAET ECCCCCCCCEEEECCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH IQLYRRAAAAARPITRVANNRVAAYTLVHCADTMAQAEANGIWDATWWWYRNLAEFTLEW HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEEEEE EFPHASEQEREKMFPILEQRRNAPPDPRQFSDADMIIVGDPDECLRKMLRYAELGVDRLL CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCHHHHH CYVQFGRLSHEAVMRTIELLGTHVIPELERREVQVSTSVTAT HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9163424; 8796346 [H]