| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is htpX [H]
Identifier: 158317985
GI number: 158317985
Start: 7581681
End: 7583330
Strand: Reverse
Name: htpX [H]
Synonym: Franean1_6245
Alternate gene names: 158317985
Gene position: 7583330-7581681 (Counterclockwise)
Preceding gene: 158317988
Following gene: 158317979
Centisome position: 84.43
GC content: 72.97
Gene sequence:
>1650_bases ATGACGGGTTACGTCTGGCGGCGTTCGTCGGCCGCCTTGTCGGTGCTGGGCGGTGTACTGATCCTGGCCTGCTGGCTGCT GACCGTCTTCACACCGGTGCCGGTCCTTGTGCCGGTGGCCGTCGTGACCGGCCTCGCCGTCCTGCAGTACCTGGTGGGGC CGCGGGTCGTGGAGTGGCTGGCCCCAGCCCGAGAGCTGGAGCGTGGCGCCGACGGATATCTCAGCGACGAGCCGGTTGCC GCGATCGTCGCCCGGCAGTGCCGGAACGCCGGCATTCCGCTGGTCCGGCTCGGCATCGTCGAGGACGGTGACCCCAACGC GTTCACCTTCGGCCGGACCAGGCGGGACGCGCGTATCTGGATTTCCCGCGGGCTGCTCGACCGGCTCAACGACCGCGAGG TCGAGGCGGTGGTCGCACACGAAATCGGGCACATCAGGAATCGGGACTTCGCCGTGATGACGGCGCTGTGCGTGGTGCCG GCCCTCATGTACTACGCGGCGGCCGGCGCGCGCAGCAGCGACCAGTCCGGGGACAACGACCCGGTCAGGCTGATCGGGTC CGCCGCCTACCTGCTCTCCGAGCTGGCGCTGCTCAGCTTCTCGCGCGCTCGCGAGCTGGGGGCCGACCACGCTTCCTGCG TGATGACCGGGGACGGCGACGCGCTGTGCTCCGCCCTCGTCAAGATTGTGTACGGGATGGGGGAGCGGGATCAGGATCTC GCCGCCCGCGTCCACGCGCTGCGGGAGAACGACGAGAAGGGAGCGGCCCGTCGGCTGGCTCGCCGGGAGAGCAGGGTCCG GGCAGTCGGTGCCCTCGGTATCGCCAGCAGCGGCTCGGCGCCGTCCGTCGGCCTGATCGGCCCGGAGCTGCCCCCCGAGC GTCTCGTGCGGGCGTTGCGCTGGGAGGTCACCAGCCCCTGGGCGCGCTGGCTGGAGATCTGCTCCACCCATCCCCTCGTC TCGACCCGGATCGCCGCGCTGGAGGCGAGCGGCCTGCCCGGTGCGCCCCGGCAGTGGCGGGGAGCCCGGGCCGCGGCGCG CGGGAGCGCCGGCGAGCGGGTCCGGGCCCGCGGCCAGTTCCTGGTGGAGCTGCCCGTGTACTTCGGTGGCTGGATCTGCC TGGGTGCCGCGCTGATCCTCGCCCGCCGTGGGCCCGACCACTACGACCTGGGCTTCCTCGCCGGACTGGTGACGGCCGCC GGTGCGCTGCTGCTGATCCGCGCGGGCCTGCGGGCACCGCTGGGCACTCCGGAGCCGGTCGGACGGCTCACCGACCTGCT CGACCGGCTCGACGCCGGGCCACTCGGCGCGATACCGGTCAGCCTGCGCGGGACGATCGTGGGCCGGGGCGGGTTCGTGA CCTCGCCCGACCTCGTCCTCGCGGACGCCAGCGGGACGGTGCCCGTCGTGTACCGCCACCCGGCGCCGGGAGGAGGGATC CTGTTCGCGCTGACCCGGGCCCAGTCCTTCGTCGGAGACGAGGTGGTGGTGACCGGGTGGTATCTGCGCGCGCCCCATCC GTACGTCGAACTGCGCACCGTCAGCGGCGCCGAGGCCGGGACCGTCCGGTGCTGGCTTTTCGCCGCACGCTATCTGCTGT CCGCCGCGGTGCTCCTCGCCGGAGCCCTGCTGTTCGTGTACGCCCCCTGA
Upstream 100 bases:
>100_bases GCAGCATGCGACGAGGCTATCCTCCGGCAGCCGGGAACGGTTTTGGATAACTTGGTCCGGGTTGTATGGCTGCTTGTCTG GCCGATTCGGGGGGCGGGGC
Downstream 100 bases:
>100_bases GCCCGATCCTCAACCCGGCCTTGGTGGGGGTGAGGATGATGCGCCGCGACAGCGGATGTCTCGACGGACGTCAGCGGGAC AGTCCGGTCGCGCGCAGCGG
Product: peptidase M48 Ste24p
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 549; Mature: 548
Protein sequence:
>549_residues MTGYVWRRSSAALSVLGGVLILACWLLTVFTPVPVLVPVAVVTGLAVLQYLVGPRVVEWLAPARELERGADGYLSDEPVA AIVARQCRNAGIPLVRLGIVEDGDPNAFTFGRTRRDARIWISRGLLDRLNDREVEAVVAHEIGHIRNRDFAVMTALCVVP ALMYYAAAGARSSDQSGDNDPVRLIGSAAYLLSELALLSFSRARELGADHASCVMTGDGDALCSALVKIVYGMGERDQDL AARVHALRENDEKGAARRLARRESRVRAVGALGIASSGSAPSVGLIGPELPPERLVRALRWEVTSPWARWLEICSTHPLV STRIAALEASGLPGAPRQWRGARAAARGSAGERVRARGQFLVELPVYFGGWICLGAALILARRGPDHYDLGFLAGLVTAA GALLLIRAGLRAPLGTPEPVGRLTDLLDRLDAGPLGAIPVSLRGTIVGRGGFVTSPDLVLADASGTVPVVYRHPAPGGGI LFALTRAQSFVGDEVVVTGWYLRAPHPYVELRTVSGAEAGTVRCWLFAARYLLSAAVLLAGALLFVYAP
Sequences:
>Translated_549_residues MTGYVWRRSSAALSVLGGVLILACWLLTVFTPVPVLVPVAVVTGLAVLQYLVGPRVVEWLAPARELERGADGYLSDEPVA AIVARQCRNAGIPLVRLGIVEDGDPNAFTFGRTRRDARIWISRGLLDRLNDREVEAVVAHEIGHIRNRDFAVMTALCVVP ALMYYAAAGARSSDQSGDNDPVRLIGSAAYLLSELALLSFSRARELGADHASCVMTGDGDALCSALVKIVYGMGERDQDL AARVHALRENDEKGAARRLARRESRVRAVGALGIASSGSAPSVGLIGPELPPERLVRALRWEVTSPWARWLEICSTHPLV STRIAALEASGLPGAPRQWRGARAAARGSAGERVRARGQFLVELPVYFGGWICLGAALILARRGPDHYDLGFLAGLVTAA GALLLIRAGLRAPLGTPEPVGRLTDLLDRLDAGPLGAIPVSLRGTIVGRGGFVTSPDLVLADASGTVPVVYRHPAPGGGI LFALTRAQSFVGDEVVVTGWYLRAPHPYVELRTVSGAEAGTVRCWLFAARYLLSAAVLLAGALLFVYAP >Mature_548_residues TGYVWRRSSAALSVLGGVLILACWLLTVFTPVPVLVPVAVVTGLAVLQYLVGPRVVEWLAPARELERGADGYLSDEPVAA IVARQCRNAGIPLVRLGIVEDGDPNAFTFGRTRRDARIWISRGLLDRLNDREVEAVVAHEIGHIRNRDFAVMTALCVVPA LMYYAAAGARSSDQSGDNDPVRLIGSAAYLLSELALLSFSRARELGADHASCVMTGDGDALCSALVKIVYGMGERDQDLA ARVHALRENDEKGAARRLARRESRVRAVGALGIASSGSAPSVGLIGPELPPERLVRALRWEVTSPWARWLEICSTHPLVS TRIAALEASGLPGAPRQWRGARAAARGSAGERVRARGQFLVELPVYFGGWICLGAALILARRGPDHYDLGFLAGLVTAAG ALLLIRAGLRAPLGTPEPVGRLTDLLDRLDAGPLGAIPVSLRGTIVGRGGFVTSPDLVLADASGTVPVVYRHPAPGGGIL FALTRAQSFVGDEVVVTGWYLRAPHPYVELRTVSGAEAGTVRCWLFAARYLLSAAVLLAGALLFVYAP
Specific function: Unknown Function. Overexpression Of A Truncated Form Of The Htpx Protein Leads To An Increase In The Degradation Of Abnormal Proteins. [C]
COG id: COG0501
COG function: function code O; Zn-dependent protease with chaperone function
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M48B family [H]
Homologues:
Organism=Escherichia coli, GI1788133, Length=153, Percent_Identity=32.0261437908497, Blast_Score=69, Evalue=5e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022919 - InterPro: IPR001915 [H]
Pfam domain/function: PF01435 Peptidase_M48 [H]
EC number: 3.4.24.- [C]
Molecular weight: Translated: 58375; Mature: 58244
Theoretical pI: Translated: 9.02; Mature: 9.02
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGYVWRRSSAALSVLGGVLILACWLLTVFTPVPVLVPVAVVTGLAVLQYLVGPRVVEWL CCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH APARELERGADGYLSDEPVAAIVARQCRNAGIPLVRLGIVEDGDPNAFTFGRTRRDARIW HHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEECCCCCCCHHHH ISRGLLDRLNDREVEAVVAHEIGHIRNRDFAVMTALCVVPALMYYAAAGARSSDQSGDND HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC PVRLIGSAAYLLSELALLSFSRARELGADHASCVMTGDGDALCSALVKIVYGMGERDQDL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCHHH AARVHALRENDEKGAARRLARRESRVRAVGALGIASSGSAPSVGLIGPELPPERLVRALR HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCHHHHHHHHH WEVTSPWARWLEICSTHPLVSTRIAALEASGLPGAPRQWRGARAAARGSAGERVRARGQF HCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHCCCHHHHCCCCCHHHHHCCCE LVELPVYFGGWICLGAALILARRGPDHYDLGFLAGLVTAAGALLLIRAGLRAPLGTPEPV EEEEHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH GRLTDLLDRLDAGPLGAIPVSLRGTIVGRGGFVTSPDLVLADASGTVPVVYRHPAPGGGI HHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCCCCE LFALTRAQSFVGDEVVVTGWYLRAPHPYVELRTVSGAEAGTVRCWLFAARYLLSAAVLLA EEEEHHHHHHCCCCEEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH GALLFVYAP HHHHHEECC >Mature Secondary Structure TGYVWRRSSAALSVLGGVLILACWLLTVFTPVPVLVPVAVVTGLAVLQYLVGPRVVEWL CCCEEECCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH APARELERGADGYLSDEPVAAIVARQCRNAGIPLVRLGIVEDGDPNAFTFGRTRRDARIW HHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEECCCCCCCHHHH ISRGLLDRLNDREVEAVVAHEIGHIRNRDFAVMTALCVVPALMYYAAAGARSSDQSGDND HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC PVRLIGSAAYLLSELALLSFSRARELGADHASCVMTGDGDALCSALVKIVYGMGERDQDL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCHHH AARVHALRENDEKGAARRLARRESRVRAVGALGIASSGSAPSVGLIGPELPPERLVRALR HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCHHHHHHHHH WEVTSPWARWLEICSTHPLVSTRIAALEASGLPGAPRQWRGARAAARGSAGERVRARGQF HCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHCCCHHHHCCCCCHHHHHCCCE LVELPVYFGGWICLGAALILARRGPDHYDLGFLAGLVTAAGALLLIRAGLRAPLGTPEPV EEEEHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH GRLTDLLDRLDAGPLGAIPVSLRGTIVGRGGFVTSPDLVLADASGTVPVVYRHPAPGGGI HHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCCCCE LFALTRAQSFVGDEVVVTGWYLRAPHPYVELRTVSGAEAGTVRCWLFAARYLLSAAVLLA EEEEHHHHHHCCCCEEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH GALLFVYAP HHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: Zn [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9371463 [H]