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The map label for this gene is glnR [H]

Identifier: 158317918

GI number: 158317918

Start: 7505977

End: 7506720

Strand: Direct

Name: glnR [H]

Synonym: Franean1_6176

Alternate gene names: 158317918

Gene position: 7505977-7506720 (Clockwise)

Preceding gene: 158317909

Following gene: 158317919

Centisome position: 83.57

GC content: 71.51

Gene sequence:

>744_bases
TTGAGCGTCGTCCTTTTGCTCACCAACGCCCCCGGTCCGTCAGCCGAGTCCTTCCCGTCACTCGGCCTGCTCACGCACAC
GGTCCGGGTGGCACCCCTGGAGGCAAGCGCACTGCTCGACGCACCGCCGGTCGATGTGATCGTCGTCGACGGCCGCCGTG
AGCTCGTGATCGCGCGAGGCCTGTGCCGGCTGCTGCGCACCACCGGGCTCACCACCCCGCTGCTCGCCCTTGTCACCGAG
GGTGGGCTCGCCGCCGTGTCGGCGGACTGGGGCGTCGACGACGTGGTCCTCGACACCGCGGGTCCAGCCGAGGTCGAGGC
GCGGCTGCGCCTGGCCATCGGGCGGGTCGCCGCCGCCGGCGGTACGGCCGAGGCCGGGGTCATCCGGTCCGGCGACCTGT
CGGTCGACGAGACCACCTACTCCGCCAAGCTGCGTGGACGTCCGCTCGAGCTCACGTTCAAGGAGTTCGAGCTGCTCAAG
TACCTCGCGCAGCACCCGGGGCGGGTCTTCACCCGCGCGCAGCTCCTGCAGGAGGTCTGGGGCTACGACTACTACGGCGG
CACCCGCACGGTTGACGTGCACGTCCGCCGGCTGCGGGCGAAGCTCGGGCCCGAGCACGAGGCGATGATCGGAACCGTCC
GCCACGTGGGCTACAAGTTCGTGGCGCCGCCGATCTCGCCGCTGCCCGAGTCCGGTGCCAACCGTATGGACCGGGACGAC
ATCCGCACCCCCGAGCGCGTCTGA

Upstream 100 bases:

>100_bases
CTCGTTTCATGCCCATGACGGTCGTGGAACGTGGGACACCGGAGACAAGGATCGCTGGGTCGACGCTGCCCCAACACACA
CCGCACCTGGAGGAGCCGTC

Downstream 100 bases:

>100_bases
CCTCACCACTGGCGCTACCCGCTCCACAGGCGCCATTTGCTCCGCAGGCACGGGGCTCGCGCCAGCACCACCGCGCGCGT
TCCGAAAGGGCCCGACGGTC

Product: winged helix family two component response transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MSVVLLLTNAPGPSAESFPSLGLLTHTVRVAPLEASALLDAPPVDVIVVDGRRELVIARGLCRLLRTTGLTTPLLALVTE
GGLAAVSADWGVDDVVLDTAGPAEVEARLRLAIGRVAAAGGTAEAGVIRSGDLSVDETTYSAKLRGRPLELTFKEFELLK
YLAQHPGRVFTRAQLLQEVWGYDYYGGTRTVDVHVRRLRAKLGPEHEAMIGTVRHVGYKFVAPPISPLPESGANRMDRDD
IRTPERV

Sequences:

>Translated_247_residues
MSVVLLLTNAPGPSAESFPSLGLLTHTVRVAPLEASALLDAPPVDVIVVDGRRELVIARGLCRLLRTTGLTTPLLALVTE
GGLAAVSADWGVDDVVLDTAGPAEVEARLRLAIGRVAAAGGTAEAGVIRSGDLSVDETTYSAKLRGRPLELTFKEFELLK
YLAQHPGRVFTRAQLLQEVWGYDYYGGTRTVDVHVRRLRAKLGPEHEAMIGTVRHVGYKFVAPPISPLPESGANRMDRDD
IRTPERV
>Mature_246_residues
SVVLLLTNAPGPSAESFPSLGLLTHTVRVAPLEASALLDAPPVDVIVVDGRRELVIARGLCRLLRTTGLTTPLLALVTEG
GLAAVSADWGVDDVVLDTAGPAEVEARLRLAIGRVAAAGGTAEAGVIRSGDLSVDETTYSAKLRGRPLELTFKEFELLKY
LAQHPGRVFTRAQLLQEVWGYDYYGGTRTVDVHVRRLRAKLGPEHEAMIGTVRHVGYKFVAPPISPLPESGANRMDRDDI
RTPERV

Specific function: Activates the transcription of the glnA gene [H]

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786599, Length=131, Percent_Identity=41.2213740458015, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1786784, Length=182, Percent_Identity=31.8681318681319, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI87082012, Length=135, Percent_Identity=35.5555555555556, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1790860, Length=180, Percent_Identity=34.4444444444444, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788394, Length=135, Percent_Identity=36.2962962962963, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1789809, Length=169, Percent_Identity=30.1775147928994, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1789402, Length=182, Percent_Identity=30.7692307692308, Blast_Score=68, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001867
- InterPro:   IPR016032
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 26577; Mature: 26446

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVVLLLTNAPGPSAESFPSLGLLTHTVRVAPLEASALLDAPPVDVIVVDGRRELVIARG
CEEEEEEECCCCCCCCCCCCCCHHHHEEEEECCCHHHHCCCCCCEEEEECCCCHHHHHHH
LCRLLRTTGLTTPLLALVTEGGLAAVSADWGVDDVVLDTAGPAEVEARLRLAIGRVAAAG
HHHHHHHCCCCHHHHHHHHCCCEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCC
GTAEAGVIRSGDLSVDETTYSAKLRGRPLELTFKEFELLKYLAQHPGRVFTRAQLLQEVW
CCCCCCEEECCCCCCCCCEEEEEECCCCEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
GYDYYGGTRTVDVHVRRLRAKLGPEHEAMIGTVRHVGYKFVAPPISPLPESGANRMDRDD
CCCCCCCCEEEHHHHHHHHHHHCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCHHH
IRTPERV
CCCCCCC
>Mature Secondary Structure 
SVVLLLTNAPGPSAESFPSLGLLTHTVRVAPLEASALLDAPPVDVIVVDGRRELVIARG
EEEEEEECCCCCCCCCCCCCCHHHHEEEEECCCHHHHCCCCCCEEEEECCCCHHHHHHH
LCRLLRTTGLTTPLLALVTEGGLAAVSADWGVDDVVLDTAGPAEVEARLRLAIGRVAAAG
HHHHHHHCCCCHHHHHHHHCCCEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCC
GTAEAGVIRSGDLSVDETTYSAKLRGRPLELTFKEFELLKYLAQHPGRVFTRAQLLQEVW
CCCCCCEEECCCCCCCCCEEEEEECCCCEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
GYDYYGGTRTVDVHVRRLRAKLGPEHEAMIGTVRHVGYKFVAPPISPLPESGANRMDRDD
CCCCCCCCEEEHHHHHHHHHHHCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCHHH
IRTPERV
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7688332; 12000953 [H]