| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158317914
Identifier: 158317914
GI number: 158317914
Start: 7502331
End: 7503098
Strand: Reverse
Name: 158317914
Synonym: Franean1_6172
Alternate gene names: NA
Gene position: 7503098-7502331 (Counterclockwise)
Preceding gene: 158317915
Following gene: 158317913
Centisome position: 83.53
GC content: 71.09
Gene sequence:
>768_bases ATGAGCCCCGGTGGCCGGCGCGGCCTGCGCATCTTCCTGATCACAATGGTCGTGGCTCTGATCGTCGTCGGGGTACTGGA CCGGGTCGCCGCACGCGTGGTCGCCGACCAGATCGCGACCAGGGCCCAGAACGCCGAGAACCTGGCGCAACGGCCAGATG TGTCCCTCGGCGGCTTCCCCTTCCTCACCCAGGTCGTCGCCGGCCGGTATCGCGACGTCCAGCTCGAGGTCCGCGGCTAC GAGCAGGACGGCGCACGGATCGATCGCGTCCACGCCGACCTGACAGGGGTGCGGCTCCCGCTCTCCGACGTCCTGCGCGG CGCGGTCGAGCGGGTGCCCGTCGACCGGGTCGACGCCGAGGTCGACCTGACCTTCAACGACCTGAACGCATACCTGGCCA GTCAGAACTCGCAGTTGAAGATCAGCCCGGCCGGGCAGGGGATCCAGGTCGGCGGAACGGTCGATCTCCTCGGCACGGCC TACCCCGTCTCCGGTACGGCCGATATCGGCGTCGCGCCGGACGCTGTCACCTTCACCCCGCGCGACCTGGCCCCCGACCT GGCGGCGGTGATCCCGCCTGGCCTGCTCGACACCGTCCGCTCACTGCTCACGGTGCGGGTGCCGGTGACCGGGCTGCCGT TCAACATGAAGCTGCGGTCCGCCACAGTGGGCGCCGACCGGCTGACGTTCGCCGCTGGTGGGGAGAACGTGCTGCTCGAC GCCACCGTCGCCCCGACGGTCGCCCCCGCGGGCACACCCGGCCTCTGA
Upstream 100 bases:
>100_bases TCGCTCCGGGAGGCGCCCTGGCCGGGGTGCTGCTCGGCGCGCTGCTCCCGATCGCGCTGGCGGCGCCCATGGTGTACCTC GTCGGCAGGCAGCTTCCCGG
Downstream 100 bases:
>100_bases CCCGCGGCCCGGCGCGTACGCGCGCCTCGCGCGGAGGTGGGAAGGTTTCGTCGTCCTGAGGCGCTGCACCCGCCATGACC GGCGTGTGGGTCCTGCTGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 255; Mature: 254
Protein sequence:
>255_residues MSPGGRRGLRIFLITMVVALIVVGVLDRVAARVVADQIATRAQNAENLAQRPDVSLGGFPFLTQVVAGRYRDVQLEVRGY EQDGARIDRVHADLTGVRLPLSDVLRGAVERVPVDRVDAEVDLTFNDLNAYLASQNSQLKISPAGQGIQVGGTVDLLGTA YPVSGTADIGVAPDAVTFTPRDLAPDLAAVIPPGLLDTVRSLLTVRVPVTGLPFNMKLRSATVGADRLTFAAGGENVLLD ATVAPTVAPAGTPGL
Sequences:
>Translated_255_residues MSPGGRRGLRIFLITMVVALIVVGVLDRVAARVVADQIATRAQNAENLAQRPDVSLGGFPFLTQVVAGRYRDVQLEVRGY EQDGARIDRVHADLTGVRLPLSDVLRGAVERVPVDRVDAEVDLTFNDLNAYLASQNSQLKISPAGQGIQVGGTVDLLGTA YPVSGTADIGVAPDAVTFTPRDLAPDLAAVIPPGLLDTVRSLLTVRVPVTGLPFNMKLRSATVGADRLTFAAGGENVLLD ATVAPTVAPAGTPGL >Mature_254_residues SPGGRRGLRIFLITMVVALIVVGVLDRVAARVVADQIATRAQNAENLAQRPDVSLGGFPFLTQVVAGRYRDVQLEVRGYE QDGARIDRVHADLTGVRLPLSDVLRGAVERVPVDRVDAEVDLTFNDLNAYLASQNSQLKISPAGQGIQVGGTVDLLGTAY PVSGTADIGVAPDAVTFTPRDLAPDLAAVIPPGLLDTVRSLLTVRVPVTGLPFNMKLRSATVGADRLTFAAGGENVLLDA TVAPTVAPAGTPGL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26692; Mature: 26561
Theoretical pI: Translated: 5.03; Mature: 5.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPGGRRGLRIFLITMVVALIVVGVLDRVAARVVADQIATRAQNAENLAQRPDVSLGGFP CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCHH FLTQVVAGRYRDVQLEVRGYEQDGARIDRVHADLTGVRLPLSDVLRGAVERVPVDRVDAE HHHHHHCCCCEEEEEEEECCCCCCCEEHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCE VDLTFNDLNAYLASQNSQLKISPAGQGIQVGGTVDLLGTAYPVSGTADIGVAPDAVTFTP EEEEHHHHHHHHHCCCCEEEEECCCCCEEECCEEEECCCCCCCCCCCCCCCCCCCEEECC RDLAPDLAAVIPPGLLDTVRSLLTVRVPVTGLPFNMKLRSATVGADRLTFAAGGENVLLD HHHCCHHHHHCCCHHHHHHHHHHEEECCCCCCCCCEEECCEECCCCCEEEEECCCEEEEE ATVAPTVAPAGTPGL EECCCCCCCCCCCCC >Mature Secondary Structure SPGGRRGLRIFLITMVVALIVVGVLDRVAARVVADQIATRAQNAENLAQRPDVSLGGFP CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCHH FLTQVVAGRYRDVQLEVRGYEQDGARIDRVHADLTGVRLPLSDVLRGAVERVPVDRVDAE HHHHHHCCCCEEEEEEEECCCCCCCEEHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCE VDLTFNDLNAYLASQNSQLKISPAGQGIQVGGTVDLLGTAYPVSGTADIGVAPDAVTFTP EEEEHHHHHHHHHCCCCEEEEECCCCCEEECCEEEECCCCCCCCCCCCCCCCCCCEEECC RDLAPDLAAVIPPGLLDTVRSLLTVRVPVTGLPFNMKLRSATVGADRLTFAAGGENVLLD HHHCCHHHHHCCCHHHHHHHHHHEEECCCCCCCCCEEECCEECCCCCEEEEECCCEEEEE ATVAPTVAPAGTPGL EECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA