| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158317861
Identifier: 158317861
GI number: 158317861
Start: 7447108
End: 7448136
Strand: Reverse
Name: 158317861
Synonym: Franean1_6119
Alternate gene names: NA
Gene position: 7448136-7447108 (Counterclockwise)
Preceding gene: 158317862
Following gene: 158317860
Centisome position: 82.92
GC content: 76.09
Gene sequence:
>1029_bases ATGGGTGTCGTGGACGTCGTCACGGACGGCCCGCTGCTGCTGGCGGCGCCCGTCGCGGCCGCGGCGGGGCTGCTGTCCTT CCTGTCGCCGTGCGTGCTGCCGCTGGTTCCCGGCTACCTGTCCTTCATCACCGGGTTGTCCGGCGAGGATCTCCAGCGCC GTCCGGCGCAGACAGCCTCCGCCGGGTCCGCGGCGTTCGCCGGGTCCACGGGGTTCGCCGCGACCACGGAGCCGGGCGAG CCCGCCGCCGCGCCGATGGCTGCCACCGGAGCGCCCGCGGCTGTCGGAGCGCCCGCCGCCGCAGGCGTGTCAGGCGCGGG TGGCCCCGCGCGGGGGTCCGGTGCGTTGCCGGCCGTCGGCGTACCGCCGTCCGGCGGTGCTGCGGCGGCCGCCGGCGGGC AGCCGTCCGCGCTGGTCCGGCGGCTGGGGGAGCTGCGCAGGGTCGGCCGGGTGACCGCTGGAACCGGGCTGTTCGTGCTC GGTTTCAGCGTCGTGTTCGTGACGTACGGGGTGGCGTTCGGCGGCCTCGGCCAGTGGCTGAACCTGCACCAGGTCGGGCT CAGCCAGGTGCTCGGTGTGGTCACGATCGTGATGGGGCTCGGCTTCGCCGGAGTGTTCTCCCAGATGTCCTGGGCCAACC GGGAGTGGCGCTTCCACCGCCTGCCCAACCCCGGGCTGCTCGGCGCCCCCGCGCTGGGCGTGATGTTCGGTCTCGGCTGG ACGCCGTGCATCGGCCCGACCCTGGCCGCCGTGCTGGGGCTCGCCGCGCAGAGCGCGACGGCCGGGCGCGGCGCGTTCCT CTCCGCCATGTACTGCCTGGGGCTCGGGCTGCCCTTCCTGGCCGTCGGCCTGGCCTTCCGCCGCGCCGCCGGTGCCCTGC GGGTGGTCCGCCGCCACGCCCGACTCCTCGCGCTGACCGGCGGCGCCCTGCTGGTGACGGTGGGCGTTCTGCAGCTCACC GGAGCCTGGGCCGACCTTGTCGCCGAGCTGCGCCCCTACGCGCCCGGATTCTCGGAGACGCCCCTGTGA
Upstream 100 bases:
>100_bases CGACGCGGACGGCCGCATCGCCGCCCGCTTCACCGGTGGCGTGCTGCCGGCGGAGCTGACCACCGTGCTCGAGCGGCTCC GGACGGAGGTCTAGTTCCGG
Downstream 100 bases:
>100_bases GCACACGTCCCACCGCGCCGTCAGGGCATGTCGACGGGCTGCGCCCGGACGATCCGACGGTCCTCGAGGCCCCGGAGGCG TTCGACCCACCGGCTCCGCG
Product: cytochrome C biogenesis transmembrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 342; Mature: 341
Protein sequence:
>342_residues MGVVDVVTDGPLLLAAPVAAAAGLLSFLSPCVLPLVPGYLSFITGLSGEDLQRRPAQTASAGSAAFAGSTGFAATTEPGE PAAAPMAATGAPAAVGAPAAAGVSGAGGPARGSGALPAVGVPPSGGAAAAAGGQPSALVRRLGELRRVGRVTAGTGLFVL GFSVVFVTYGVAFGGLGQWLNLHQVGLSQVLGVVTIVMGLGFAGVFSQMSWANREWRFHRLPNPGLLGAPALGVMFGLGW TPCIGPTLAAVLGLAAQSATAGRGAFLSAMYCLGLGLPFLAVGLAFRRAAGALRVVRRHARLLALTGGALLVTVGVLQLT GAWADLVAELRPYAPGFSETPL
Sequences:
>Translated_342_residues MGVVDVVTDGPLLLAAPVAAAAGLLSFLSPCVLPLVPGYLSFITGLSGEDLQRRPAQTASAGSAAFAGSTGFAATTEPGE PAAAPMAATGAPAAVGAPAAAGVSGAGGPARGSGALPAVGVPPSGGAAAAAGGQPSALVRRLGELRRVGRVTAGTGLFVL GFSVVFVTYGVAFGGLGQWLNLHQVGLSQVLGVVTIVMGLGFAGVFSQMSWANREWRFHRLPNPGLLGAPALGVMFGLGW TPCIGPTLAAVLGLAAQSATAGRGAFLSAMYCLGLGLPFLAVGLAFRRAAGALRVVRRHARLLALTGGALLVTVGVLQLT GAWADLVAELRPYAPGFSETPL >Mature_341_residues GVVDVVTDGPLLLAAPVAAAAGLLSFLSPCVLPLVPGYLSFITGLSGEDLQRRPAQTASAGSAAFAGSTGFAATTEPGEP AAAPMAATGAPAAVGAPAAAGVSGAGGPARGSGALPAVGVPPSGGAAAAAGGQPSALVRRLGELRRVGRVTAGTGLFVLG FSVVFVTYGVAFGGLGQWLNLHQVGLSQVLGVVTIVMGLGFAGVFSQMSWANREWRFHRLPNPGLLGAPALGVMFGLGWT PCIGPTLAAVLGLAAQSATAGRGAFLSAMYCLGLGLPFLAVGLAFRRAAGALRVVRRHARLLALTGGALLVTVGVLQLTG AWADLVAELRPYAPGFSETPL
Specific function: Could be involved in cytochrome c synthesis [H]
COG id: COG0785
COG function: function code O; Cytochrome c biogenesis protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DsbD family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003834 [H]
Pfam domain/function: PF02683 DsbD [H]
EC number: NA
Molecular weight: Translated: 33794; Mature: 33663
Theoretical pI: Translated: 10.95; Mature: 10.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGVVDVVTDGPLLLAAPVAAAAGLLSFLSPCVLPLVPGYLSFITGLSGEDLQRRPAQTAS CCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHCC AGSAAFAGSTGFAATTEPGEPAAAPMAATGAPAAVGAPAAAGVSGAGGPARGSGALPAVG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC VPPSGGAAAAAGGQPSALVRRLGELRRVGRVTAGTGLFVLGFSVVFVTYGVAFGGLGQWL CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH NLHQVGLSQVLGVVTIVMGLGFAGVFSQMSWANREWRFHRLPNPGLLGAPALGVMFGLGW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHCCC TPCIGPTLAAVLGLAAQSATAGRGAFLSAMYCLGLGLPFLAVGLAFRRAAGALRVVRRHA CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH RLLALTGGALLVTVGVLQLTGAWADLVAELRPYAPGFSETPL HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure GVVDVVTDGPLLLAAPVAAAAGLLSFLSPCVLPLVPGYLSFITGLSGEDLQRRPAQTAS CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHCC AGSAAFAGSTGFAATTEPGEPAAAPMAATGAPAAVGAPAAAGVSGAGGPARGSGALPAVG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC VPPSGGAAAAAGGQPSALVRRLGELRRVGRVTAGTGLFVLGFSVVFVTYGVAFGGLGQWL CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH NLHQVGLSQVLGVVTIVMGLGFAGVFSQMSWANREWRFHRLPNPGLLGAPALGVMFGLGW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHCCC TPCIGPTLAAVLGLAAQSATAGRGAFLSAMYCLGLGLPFLAVGLAFRRAAGALRVVRRHA CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH RLLALTGGALLVTVGVLQLTGAWADLVAELRPYAPGFSETPL HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]