Click here to switch to the map view.

The map label for this gene is nuoC [H]

Identifier: 158317834

GI number: 158317834

Start: 7416894

End: 7417583

Strand: Reverse

Name: nuoC [H]

Synonym: Franean1_6092

Alternate gene names: 158317834

Gene position: 7417583-7416894 (Counterclockwise)

Preceding gene: 158317835

Following gene: 158317833

Centisome position: 82.58

GC content: 73.91

Gene sequence:

>690_bases
ATGACTGACCTGGTACCGGGCTCCGCCGGCGTTCCGGGCGGCCCGGGCGGCCGCCGCCGGGACGCCTTCGGCGCGCGCGG
CAGCGGCGACACGTCGGGTTTCGGCGGCCTCGTGCCGCCGGTGGCGGCCCTGGCGTCGACGTCCCGACCGTTCGGGGACG
AGGCCGCCGACACCGTCTACGACACCCTCGAGCGGGTCTTCCCCGAGCTCGGCGACGCCGTCGAGCGGGTCGTCTTCGCG
TACGGCGAGCTGACGATCCACGTACGCCGCGAGCGGCTGCTGGACGTCGCGTGGACGCTGCGCGACGACCCGGGGCTGCG
CTTCGAGCTGCTGTCGTCGCTGTCCGGGGTGGACTACCCCGACGACCTGACCGGCCGCCGCCTGCACTCCGTGGTGCACC
TGACGTCACTGACCCACCGGCGCCGGCTGCGCGTCGAGGTCTCCGTCGCGGACGGCGACGCGGTGCTGCCGAGCCTGACC
CCGGTCTGGCCGACCGCGGACTGGCACGAGCGCGAGGCCTACGACCTGTTCGGCATCGTCTACGAGGGCCACCACGAGCT
CACGCGGATCATGATGCCGGACGACTGGGTGGGCCACCCGCAGCGCAAGGACTACCCGCTCGGCGGCATCCCCGTCGAGT
ACAAGGGCGCGCAGATCCCGCCGCCCGAGACCCGCCGGAGCTACTCGTGA

Upstream 100 bases:

>100_bases
CCGTCCGTCTTCGGCCGCGGCAAGCGGGTGCCCGTCGACGCCAAGCCGACCGACGAGTCCCGGGCCGGCGGTCCCGGACC
GAGCACGGAGACCCTGACCG

Downstream 100 bases:

>100_bases
CCGGGCACTGTCCGGCCGGCACCCGGGCGCGGGCCACCACGGGGTCACGCGTGACCGCCAGGCATCCCCGAGCCGACTTC
CGAGGTTCGCTATGAGCACG

Product: NADH dehydrogenase subunit C

Products: NA

Alternate protein names: NADH dehydrogenase I subunit C; NDH-1 subunit C [H]

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MTDLVPGSAGVPGGPGGRRRDAFGARGSGDTSGFGGLVPPVAALASTSRPFGDEAADTVYDTLERVFPELGDAVERVVFA
YGELTIHVRRERLLDVAWTLRDDPGLRFELLSSLSGVDYPDDLTGRRLHSVVHLTSLTHRRRLRVEVSVADGDAVLPSLT
PVWPTADWHEREAYDLFGIVYEGHHELTRIMMPDDWVGHPQRKDYPLGGIPVEYKGAQIPPPETRRSYS

Sequences:

>Translated_229_residues
MTDLVPGSAGVPGGPGGRRRDAFGARGSGDTSGFGGLVPPVAALASTSRPFGDEAADTVYDTLERVFPELGDAVERVVFA
YGELTIHVRRERLLDVAWTLRDDPGLRFELLSSLSGVDYPDDLTGRRLHSVVHLTSLTHRRRLRVEVSVADGDAVLPSLT
PVWPTADWHEREAYDLFGIVYEGHHELTRIMMPDDWVGHPQRKDYPLGGIPVEYKGAQIPPPETRRSYS
>Mature_228_residues
TDLVPGSAGVPGGPGGRRRDAFGARGSGDTSGFGGLVPPVAALASTSRPFGDEAADTVYDTLERVFPELGDAVERVVFAY
GELTIHVRRERLLDVAWTLRDDPGLRFELLSSLSGVDYPDDLTGRRLHSVVHLTSLTHRRRLRVEVSVADGDAVLPSLTP
VWPTADWHEREAYDLFGIVYEGHHELTRIMMPDDWVGHPQRKDYPLGGIPVEYKGAQIPPPETRRSYS

Specific function: NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translo

COG id: COG0852

COG function: function code C; NADH:ubiquinone oxidoreductase 27 kD subunit

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the complex I 30 kDa subunit family [H]

Homologues:

Organism=Homo sapiens, GI4758788, Length=164, Percent_Identity=33.5365853658537, Blast_Score=81, Evalue=9e-16,
Organism=Escherichia coli, GI145693162, Length=127, Percent_Identity=38.5826771653543, Blast_Score=96, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI32563621, Length=141, Percent_Identity=36.1702127659575, Blast_Score=80, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI71990788, Length=137, Percent_Identity=36.4963503649635, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24656494, Length=141, Percent_Identity=34.0425531914894, Blast_Score=77, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010218
- InterPro:   IPR001268
- ProDom:   PD001581 [H]

Pfam domain/function: PF00329 Complex1_30kDa [H]

EC number: =1.6.99.5 [H]

Molecular weight: Translated: 25197; Mature: 25065

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDLVPGSAGVPGGPGGRRRDAFGARGSGDTSGFGGLVPPVAALASTSRPFGDEAADTVY
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHH
DTLERVFPELGDAVERVVFAYGELTIHVRRERLLDVAWTLRDDPGLRFELLSSLSGVDYP
HHHHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHEECCCCCHHHHHHHHHCCCCCC
DDLTGRRLHSVVHLTSLTHRRRLRVEVSVADGDAVLPSLTPVWPTADWHEREAYDLFGIV
CCCCHHHHHHHHHHHHHHHCEEEEEEEEECCCCEECCCCCCCCCCCCCCCCHHHHHEEEE
YEGHHELTRIMMPDDWVGHPQRKDYPLGGIPVEYKGAQIPPPETRRSYS
ECCCHHEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TDLVPGSAGVPGGPGGRRRDAFGARGSGDTSGFGGLVPPVAALASTSRPFGDEAADTVY
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHH
DTLERVFPELGDAVERVVFAYGELTIHVRRERLLDVAWTLRDDPGLRFELLSSLSGVDYP
HHHHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHEECCCCCHHHHHHHHHCCCCCC
DDLTGRRLHSVVHLTSLTHRRRLRVEVSVADGDAVLPSLTPVWPTADWHEREAYDLFGIV
CCCCHHHHHHHHHHHHHHHCEEEEEEEEECCCCEECCCCCCCCCCCCCCCCHHHHHEEEE
YEGHHELTRIMMPDDWVGHPQRKDYPLGGIPVEYKGAQIPPPETRRSYS
ECCCHHEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA