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The map label for this gene is yhjD [H]

Identifier: 158317708

GI number: 158317708

Start: 7269782

End: 7270954

Strand: Reverse

Name: yhjD [H]

Synonym: Franean1_5966

Alternate gene names: 158317708

Gene position: 7270954-7269782 (Counterclockwise)

Preceding gene: 158317709

Following gene: 158317705

Centisome position: 80.95

GC content: 71.95

Gene sequence:

>1173_bases
GTGACAGGACCACGGGAAGCGGTGAAGACGGGCGTGGGAACGGTGAGCGGCGCCGCGGGCGCGGTGCGGCGCCGTCGCCC
GTTCATTGACCACACGGTGCGTGCGTACGGCCGCTATACGTCGGACGGCGGTGACCGGCTCGCCGCGTCCACGACATATT
TCGCTTTCCTGTCCTTCTTCCCGATCGTGGCGCTGGTCTTCTCGATCGCCGGGTTCGTCGTGGACGCCTATCCCGACGCC
CAGGCCAAGCTCACCGAACAGATCAACGACTATCTGCCCGGCCTGGCCGACAAACTGGACGTCTCGACCATCGGCCATGC
GAAGGTCGGCGCCGGTCTGATCGGTCTCGCCGGTCTCCTCCTGGCCGGGCTGGCCTGGGTCTCGGCGCTGCGCGACAGCA
TCCGGCTCGTCTGGCACCAGAGCCTGGAGACCGGCAACTTCATCATGCAGCGCCTGCGGGACATCGCGATCCTCACCGGT
CTCGGCCTGACCCTGCTCGCCTCGCTCGTCGTCACCAGCCTGGCGACGTCCGCGACCGGGGTGTTCCTGCGCTGGGTCGG
GCTGGAGGGGAGCACGGCCGCCGCCTGGGCCACCGGGCTGCTCGCGCTCATGGTCGCGCTCGCCATCGATGCCGCCGTGT
TCGTCTACATCTTCTGGCGGTTGCCGGAACGCACCAACCGGCAGCGGGTGCTGCGCGCGGCCGCGCTGGGCGCGGTGGGC
ATCGAGCTGCTCAAGCTGCTCGGGACCTGGCTGGTCGGTCAGACCACGTCCAACCCGGTCTACGGCATCTTCGCGGTCAT
GGTCGGCCTGCTCATCTGGATCAACATCGTGATGCGCTGGATGCTGTTCGTCGCCGCCTGGGCGGTGACGGCACCGTACG
CGTCGGACGTCCATCCGTCCGGTACCGCCCCGGCGGACCCGGCGGGCCCCGACGTTGCCGGGGCGGACGGGCCCGGGCCG
GAGGGGGACCGCGTTGCCCCCGAGCCGCCGGCCGTCCGTGTCGAGCCGCCGGCCGTCCGGTCCGCGCGATCCGGGCGTGA
CGACCGGAGCACCCACGACGATCACGATGGCCACGATGGCCACGGCGGCGAGGACGGCCGCTCCTGGCGACCGCGATGGC
CCTGGCGGCGCGGCGCGGCGCGCCCGGCGGACCGGGCGCCGGTCGGGCGCTGA

Upstream 100 bases:

>100_bases
AGTTCGAGGTGACAGGTTTCGGGCTCTACGAACGCGGCGATGACTGCGCCTGGCGTCAGTTGCGTCATTTTCCCTTCGCG
GGCGGGGGTGGCAGACCGAG

Downstream 100 bases:

>100_bases
CCGGCGCGCCACGCCTCAGGGGTCAGGCGGCCTCAGAGCGAGGCGGCCTCAGAGCTGGGGGAGCTCGGGGACCGGGCGGG
CTCAGGGGCGGGGCGAGCGG

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 389

Protein sequence:

>390_residues
MTGPREAVKTGVGTVSGAAGAVRRRRPFIDHTVRAYGRYTSDGGDRLAASTTYFAFLSFFPIVALVFSIAGFVVDAYPDA
QAKLTEQINDYLPGLADKLDVSTIGHAKVGAGLIGLAGLLLAGLAWVSALRDSIRLVWHQSLETGNFIMQRLRDIAILTG
LGLTLLASLVVTSLATSATGVFLRWVGLEGSTAAAWATGLLALMVALAIDAAVFVYIFWRLPERTNRQRVLRAAALGAVG
IELLKLLGTWLVGQTTSNPVYGIFAVMVGLLIWINIVMRWMLFVAAWAVTAPYASDVHPSGTAPADPAGPDVAGADGPGP
EGDRVAPEPPAVRVEPPAVRSARSGRDDRSTHDDHDGHDGHGGEDGRSWRPRWPWRRGAARPADRAPVGR

Sequences:

>Translated_390_residues
MTGPREAVKTGVGTVSGAAGAVRRRRPFIDHTVRAYGRYTSDGGDRLAASTTYFAFLSFFPIVALVFSIAGFVVDAYPDA
QAKLTEQINDYLPGLADKLDVSTIGHAKVGAGLIGLAGLLLAGLAWVSALRDSIRLVWHQSLETGNFIMQRLRDIAILTG
LGLTLLASLVVTSLATSATGVFLRWVGLEGSTAAAWATGLLALMVALAIDAAVFVYIFWRLPERTNRQRVLRAAALGAVG
IELLKLLGTWLVGQTTSNPVYGIFAVMVGLLIWINIVMRWMLFVAAWAVTAPYASDVHPSGTAPADPAGPDVAGADGPGP
EGDRVAPEPPAVRVEPPAVRSARSGRDDRSTHDDHDGHDGHGGEDGRSWRPRWPWRRGAARPADRAPVGR
>Mature_389_residues
TGPREAVKTGVGTVSGAAGAVRRRRPFIDHTVRAYGRYTSDGGDRLAASTTYFAFLSFFPIVALVFSIAGFVVDAYPDAQ
AKLTEQINDYLPGLADKLDVSTIGHAKVGAGLIGLAGLLLAGLAWVSALRDSIRLVWHQSLETGNFIMQRLRDIAILTGL
GLTLLASLVVTSLATSATGVFLRWVGLEGSTAAAWATGLLALMVALAIDAAVFVYIFWRLPERTNRQRVLRAAALGAVGI
ELLKLLGTWLVGQTTSNPVYGIFAVMVGLLIWINIVMRWMLFVAAWAVTAPYASDVHPSGTAPADPAGPDVAGADGPGPE
GDRVAPEPPAVRVEPPAVRSARSGRDDRSTHDDHDGHDGHGGEDGRSWRPRWPWRRGAARPADRAPVGR

Specific function: Unknown

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789939, Length=310, Percent_Identity=32.5806451612903, Blast_Score=144, Evalue=1e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005274
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: NA

Molecular weight: Translated: 41511; Mature: 41380

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGPREAVKTGVGTVSGAAGAVRRRRPFIDHTVRAYGRYTSDGGDRLAASTTYFAFLSFF
CCCHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
PIVALVFSIAGFVVDAYPDAQAKLTEQINDYLPGLADKLDVSTIGHAKVGAGLIGLAGLL
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHCCHHHCCCHHHHHHHHHHHHHH
LAGLAWVSALRDSIRLVWHQSLETGNFIMQRLRDIAILTGLGLTLLASLVVTSLATSATG
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
VFLRWVGLEGSTAAAWATGLLALMVALAIDAAVFVYIFWRLPERTNRQRVLRAAALGAVG
EEHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
IELLKLLGTWLVGQTTSNPVYGIFAVMVGLLIWINIVMRWMLFVAAWAVTAPYASDVHPS
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
GTAPADPAGPDVAGADGPGPEGDRVAPEPPAVRVEPPAVRSARSGRDDRSTHDDHDGHDG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHCCCCCCCCCCCCCCCCC
HGGEDGRSWRPRWPWRRGAARPADRAPVGR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TGPREAVKTGVGTVSGAAGAVRRRRPFIDHTVRAYGRYTSDGGDRLAASTTYFAFLSFF
CCHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
PIVALVFSIAGFVVDAYPDAQAKLTEQINDYLPGLADKLDVSTIGHAKVGAGLIGLAGLL
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHCCHHHCCCHHHHHHHHHHHHHH
LAGLAWVSALRDSIRLVWHQSLETGNFIMQRLRDIAILTGLGLTLLASLVVTSLATSATG
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
VFLRWVGLEGSTAAAWATGLLALMVALAIDAAVFVYIFWRLPERTNRQRVLRAAALGAVG
EEHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
IELLKLLGTWLVGQTTSNPVYGIFAVMVGLLIWINIVMRWMLFVAAWAVTAPYASDVHPS
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
GTAPADPAGPDVAGADGPGPEGDRVAPEPPAVRVEPPAVRSARSGRDDRSTHDDHDGHDG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHCCCCCCCCCCCCCCCCC
HGGEDGRSWRPRWPWRRGAARPADRAPVGR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]