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The map label for this gene is ybdK [C]

Identifier: 158317669

GI number: 158317669

Start: 7199208

End: 7200356

Strand: Direct

Name: ybdK [C]

Synonym: Franean1_5927

Alternate gene names: 158317669

Gene position: 7199208-7200356 (Clockwise)

Preceding gene: 158317668

Following gene: 158317670

Centisome position: 80.15

GC content: 69.89

Gene sequence:

>1149_bases
GTGCACATTCCCTTCTCGTCGTCGCCGAGTTCGAGCCTTGGGATCGAGTGGGAGCTGGAACTCGTCGACCTGCAGAGCCG
GCACCTGCGTGGCGGCGCGACCGAGATCCTCGAGGACCTGCGGGCCAAGGTCGGCGAGGAGGGCGCCGCCAAGGCCAAGC
ACGAGCTCTTCGAGTCGACCATCGAAGTGATCACCGGGGTGTGTCAGACCGTGCCCGAGGCCACCGCCGACCTGCTCGGC
ACGGTCGAGGTGCTGCGGGATCTGGCCGAGCGGCGCGGCATCGGCCTGATGTGCTCCGGCACCCACCCGATCAGCGAGTA
CTCCACCCAGAAGATCACCGCGGACGACCGCTACGACCGCCTGGTCGGCCGGATGCAGTGGCTGGCCCGGCGGCTGCTCA
TCTTCGGGGTGCACGTCCACGTGGGCGTGCGCTCGCCGGAGAAGGCGATGCCCATCGTGAACGCGCTGATGTCCTACATC
CCGCACTTCCTGGCGCTCTCGGCGTCCTCGCCCTACTGGCTCGGCTCGCACACGGGGCTCGCGTCGTCGCGCTCACGGGT
GTTCGAGAGCCTGCCGACCGCCGGCCTGCCCTACCCGCTGCACGACTGGGCGGCGTTCGAGGGGTTCATGGAGACCCTGG
TGACGGCCGGCACCATCGAGACGATCCGCGAGGTGTGGTGGGACATCCGCCCCCACCCCAACTTCGGCACCGTCGAGCTG
CGCATCTGCGACGGCCTGCCGACGCTGCTCGAGGTCGGCGCGGTCGCCGCGCTCGCGCAGTGCATCGTCGACCGGATGAA
CACCCAGCTCGACCGCGGGTACCGGCTTCCGGCCCCGCAACGCTGGGTGGTGCAGGAGAACAAGTGGCGGGCCGCCCGCT
ACGGGCTCGACGCGGAGATCATGGTGGACGACCGCGGCACCGTGCGCCCGGTCAGCACCGACATCGTCGACCTCGTCGAG
GATCTCCTCCCCGTCGCCCGCCGGCTCGGCTGTGAAACCGAGCTCACCAACGTCGACCGGATCCTCACCTCCGGGGCGAG
CTACACCCGACAGGAACTTGCCGCGCGGCGGGCCGGCGGAGACCTCACCGCTGTGGTCGATACGCTGCTTGCGGAGATGA
ACGCGGGGCGACCGGTCACCCACGGGTAA

Upstream 100 bases:

>100_bases
GGGGGTACGGCCGCGCGATCTGGGTAACCAGCCCGGAGAGCTCGCTGCCCGAGTTCCGGGCCCGCCCGCTGGCGGGGCCC
GCTCACCCGGAGGAGCCGCG

Downstream 100 bases:

>100_bases
CCGGCCTGCCGGAGCGACAGCGGAGGGCCCGGCCCGGTAGATGACAGCGGACATGACACACAGGACCGCCGCGGCGGGCA
TGCCGATCACGGCGGCCTGG

Product: carboxylate-amine ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 382

Protein sequence:

>382_residues
MHIPFSSSPSSSLGIEWELELVDLQSRHLRGGATEILEDLRAKVGEEGAAKAKHELFESTIEVITGVCQTVPEATADLLG
TVEVLRDLAERRGIGLMCSGTHPISEYSTQKITADDRYDRLVGRMQWLARRLLIFGVHVHVGVRSPEKAMPIVNALMSYI
PHFLALSASSPYWLGSHTGLASSRSRVFESLPTAGLPYPLHDWAAFEGFMETLVTAGTIETIREVWWDIRPHPNFGTVEL
RICDGLPTLLEVGAVAALAQCIVDRMNTQLDRGYRLPAPQRWVVQENKWRAARYGLDAEIMVDDRGTVRPVSTDIVDLVE
DLLPVARRLGCETELTNVDRILTSGASYTRQELAARRAGGDLTAVVDTLLAEMNAGRPVTHG

Sequences:

>Translated_382_residues
MHIPFSSSPSSSLGIEWELELVDLQSRHLRGGATEILEDLRAKVGEEGAAKAKHELFESTIEVITGVCQTVPEATADLLG
TVEVLRDLAERRGIGLMCSGTHPISEYSTQKITADDRYDRLVGRMQWLARRLLIFGVHVHVGVRSPEKAMPIVNALMSYI
PHFLALSASSPYWLGSHTGLASSRSRVFESLPTAGLPYPLHDWAAFEGFMETLVTAGTIETIREVWWDIRPHPNFGTVEL
RICDGLPTLLEVGAVAALAQCIVDRMNTQLDRGYRLPAPQRWVVQENKWRAARYGLDAEIMVDDRGTVRPVSTDIVDLVE
DLLPVARRLGCETELTNVDRILTSGASYTRQELAARRAGGDLTAVVDTLLAEMNAGRPVTHG
>Mature_382_residues
MHIPFSSSPSSSLGIEWELELVDLQSRHLRGGATEILEDLRAKVGEEGAAKAKHELFESTIEVITGVCQTVPEATADLLG
TVEVLRDLAERRGIGLMCSGTHPISEYSTQKITADDRYDRLVGRMQWLARRLLIFGVHVHVGVRSPEKAMPIVNALMSYI
PHFLALSASSPYWLGSHTGLASSRSRVFESLPTAGLPYPLHDWAAFEGFMETLVTAGTIETIREVWWDIRPHPNFGTVEL
RICDGLPTLLEVGAVAALAQCIVDRMNTQLDRGYRLPAPQRWVVQENKWRAARYGLDAEIMVDDRGTVRPVSTDIVDLVE
DLLPVARRLGCETELTNVDRILTSGASYTRQELAARRAGGDLTAVVDTLLAEMNAGRPVTHG

Specific function: ATP-dependent carboxylate-amine ligase [H]

COG id: COG2170

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carboxylate-amine ligase family [H]

Homologues:

Organism=Escherichia coli, GI1786795, Length=363, Percent_Identity=30.5785123966942, Blast_Score=196, Evalue=3e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011793
- InterPro:   IPR006336 [H]

Pfam domain/function: PF04107 GCS2 [H]

EC number: NA

Molecular weight: Translated: 42128; Mature: 42128

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHIPFSSSPSSSLGIEWELELVDLQSRHLRGGATEILEDLRAKVGEEGAAKAKHELFEST
CCCCCCCCCCCCCCCEEEEEEECCHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
IEVITGVCQTVPEATADLLGTVEVLRDLAERRGIGLMCSGTHPISEYSTQKITADDRYDR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHCCCCCCCCHHHHH
LVGRMQWLARRLLIFGVHVHVGVRSPEKAMPIVNALMSYIPHFLALSASSPYWLGSHTGL
HHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCC
ASSRSRVFESLPTAGLPYPLHDWAAFEGFMETLVTAGTIETIREVWWDIRPHPNFGTVEL
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
RICDGLPTLLEVGAVAALAQCIVDRMNTQLDRGYRLPAPQRWVVQENKWRAARYGLDAEI
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHCCCCEE
MVDDRGTVRPVSTDIVDLVEDLLPVARRLGCETELTNVDRILTSGASYTRQELAARRAGG
EECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCC
DLTAVVDTLLAEMNAGRPVTHG
HHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MHIPFSSSPSSSLGIEWELELVDLQSRHLRGGATEILEDLRAKVGEEGAAKAKHELFEST
CCCCCCCCCCCCCCCEEEEEEECCHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
IEVITGVCQTVPEATADLLGTVEVLRDLAERRGIGLMCSGTHPISEYSTQKITADDRYDR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHCCCCCCCCHHHHH
LVGRMQWLARRLLIFGVHVHVGVRSPEKAMPIVNALMSYIPHFLALSASSPYWLGSHTGL
HHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCC
ASSRSRVFESLPTAGLPYPLHDWAAFEGFMETLVTAGTIETIREVWWDIRPHPNFGTVEL
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
RICDGLPTLLEVGAVAALAQCIVDRMNTQLDRGYRLPAPQRWVVQENKWRAARYGLDAEI
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHCCCCEE
MVDDRGTVRPVSTDIVDLVEDLLPVARRLGCETELTNVDRILTSGASYTRQELAARRAGG
EECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCC
DLTAVVDTLLAEMNAGRPVTHG
HHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA