BacMap

Definition	Frankia sp. EAN1pec chromosome, complete genome.
Accession	NC_009921
Length	8,982,042

Click here to switch to the map view.

The map label for this gene is abcA [H]

Identifier: 158317634

GI number: 158317634

Start: 7153452

End: 7154708

Strand: Direct

Name: abcA [H]

Synonym: Franean1_5891

Alternate gene names: 158317634

Gene position: 7153452-7154708 (Clockwise)

Preceding gene: 158317633

Following gene: 158317635

Centisome position: 79.64

GC content: 70.88

Gene sequence:

>1257_bases
GTGCCGTCGCAACCGCTCGCCCCGCCCCCGATGCAGCCCGCGCAACCGGCCGCCTCCGCGCCGTCGGCGCCGCCGGCACC
GGGCGCCCCGGTGGTCATCCGCGCCTCCGGCGTCGGCAAGAAGTTCGTCGCCTATCACAAGCGCGCCACCAGCCTGAAGG
AACGCTTCGTCCGGCGGGACACGACGAGCGGCGAGGACTTCTGGGCGCTGCGCGACATCGACGTCGAGATCGGCCGCGGG
CAGACGGTGGGGCTCGCCGGGGCGAACGGCTCGGGCAAGTCGACGCTGCTCAAGGTACTCGCCGGAATCCTGCGCCCGAC
CCACGGCGACGTGTCCGTCAGTGGTCGGATCGCGTCCCTGCTCGAGCTGGGCGCGGGGTTCAACGGCGAGCTCTCCGGCC
GGGACAACGTCTACCTCAACGCGTCCCTGCTCGGCCTGTCCAAGCGCGAGATCGACCGGCTCTTCGACTCGATCGTCGAC
TTCTCCGAGCTGCGCCACAAGATCGACGACGAGGTCAAGCACTACTCGTCCGGCCAGTACGTGCGCCTCGGCTTCGCCGT
GGCCGTGCACGTCGACCCGGACGTCCTGCTCGTCGACGAGGTGCTCGCCGTCGGCGACGAGGCGTTCCAGCGCAAGTGCC
TGGCCAAGATCGCCCAGTTCCGCGACGAGGGCCGGACGATCCTGTTCGTCACCCACTCCCTCGACCTGATCGAGAACATG
TGCGACCGGATCCTGGTGCTGGAGTCCGGCGGCCTGATCTTCGACGGGCAGCCGGTCGTCGGGACGAAGCTGCTGCGCCA
GCGGCTGGGCAGCCTGCCCGCGGACAGTCCGATCCCCTTCGACCTGGCGCCGGTGAAGCCGACGGCGGTGGCGTTCAGCC
GCAACCCGGGCGGGCCGACCGAGGTGCAGTACGACCCGGGTGAGCAGCTCACGGTCAGCGTCGAGCTCGACCTCACCGAC
AGCGCGCCGCAGTACGTCTACCTGCACGTGGAGATCATGGGGCAGGGAGAGGTACCGATCTGGATGATGGAGACCCCGCC
GGGCGGGGTCAGCCCCGGCCCGGGGACCGCCGTGGTGGACTTCGTCGTCCCCCGGCTGCCCGAGCTGCTGGGGGCGTTCG
CGATCAACGTCCGGGTGTCGGACGCGGCCACCGGCCAGCCGGTGACGGTACGGCGCTTCGAGGAGCTGTTCGGGGTCAGC
GGCCCGCAGGTCGCCGGGCTGCTCAAGGTCGACTACGAGGCGAGGCTGCGCCGATGA

Upstream 100 bases:

>100_bases
TCGAACACCTGGCGATCGCCGGGCTCATCTCGCTGGCCGTGCTGTGGCTGGGGCTGCGAGTGTTCCGGCGGCTGCAGGCC
GACTTCGCCGAGGACCTCTA

Downstream 100 bases:

>100_bases
CGGACCGGGCGACGAGCAACGGAGCGATGACCACCATGGCCATGAACGTGGCCATGACGGGCCAGGCGGCACCCGAGCCG
CTCGCCACGATCGTCATCGT

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 418; Mature: 417

Protein sequence:

>418_residues
MPSQPLAPPPMQPAQPAASAPSAPPAPGAPVVIRASGVGKKFVAYHKRATSLKERFVRRDTTSGEDFWALRDIDVEIGRG
QTVGLAGANGSGKSTLLKVLAGILRPTHGDVSVSGRIASLLELGAGFNGELSGRDNVYLNASLLGLSKREIDRLFDSIVD
FSELRHKIDDEVKHYSSGQYVRLGFAVAVHVDPDVLLVDEVLAVGDEAFQRKCLAKIAQFRDEGRTILFVTHSLDLIENM
CDRILVLESGGLIFDGQPVVGTKLLRQRLGSLPADSPIPFDLAPVKPTAVAFSRNPGGPTEVQYDPGEQLTVSVELDLTD
SAPQYVYLHVEIMGQGEVPIWMMETPPGGVSPGPGTAVVDFVVPRLPELLGAFAINVRVSDAATGQPVTVRRFEELFGVS
GPQVAGLLKVDYEARLRR

Sequences:

>Translated_418_residues
MPSQPLAPPPMQPAQPAASAPSAPPAPGAPVVIRASGVGKKFVAYHKRATSLKERFVRRDTTSGEDFWALRDIDVEIGRG
QTVGLAGANGSGKSTLLKVLAGILRPTHGDVSVSGRIASLLELGAGFNGELSGRDNVYLNASLLGLSKREIDRLFDSIVD
FSELRHKIDDEVKHYSSGQYVRLGFAVAVHVDPDVLLVDEVLAVGDEAFQRKCLAKIAQFRDEGRTILFVTHSLDLIENM
CDRILVLESGGLIFDGQPVVGTKLLRQRLGSLPADSPIPFDLAPVKPTAVAFSRNPGGPTEVQYDPGEQLTVSVELDLTD
SAPQYVYLHVEIMGQGEVPIWMMETPPGGVSPGPGTAVVDFVVPRLPELLGAFAINVRVSDAATGQPVTVRRFEELFGVS
GPQVAGLLKVDYEARLRR
>Mature_417_residues
PSQPLAPPPMQPAQPAASAPSAPPAPGAPVVIRASGVGKKFVAYHKRATSLKERFVRRDTTSGEDFWALRDIDVEIGRGQ
TVGLAGANGSGKSTLLKVLAGILRPTHGDVSVSGRIASLLELGAGFNGELSGRDNVYLNASLLGLSKREIDRLFDSIVDF
SELRHKIDDEVKHYSSGQYVRLGFAVAVHVDPDVLLVDEVLAVGDEAFQRKCLAKIAQFRDEGRTILFVTHSLDLIENMC
DRILVLESGGLIFDGQPVVGTKLLRQRLGSLPADSPIPFDLAPVKPTAVAFSRNPGGPTEVQYDPGEQLTVSVELDLTDS
APQYVYLHVEIMGQGEVPIWMMETPPGGVSPGPGTAVVDFVVPRLPELLGAFAINVRVSDAATGQPVTVRRFEELFGVSG
PQVAGLLKVDYEARLRR

Specific function: Influences the expression of the surface array protein gene (vapA). May have both regulatory and transport activities [H]

COG id: COG1134

COG function: function code GM; ABC-type polysaccharide/polyol phosphate transport system, ATPase component

Gene ontology:

Cell location: Inner Membrane-Associated [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI153792144, Length=250, Percent_Identity=27.6, Blast_Score=86, Evalue=7e-17,
Organism=Homo sapiens, GI27436953, Length=215, Percent_Identity=27.906976744186, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI6005701, Length=192, Percent_Identity=31.7708333333333, Blast_Score=84, Evalue=3e-16,
Organism=Homo sapiens, GI27262624, Length=204, Percent_Identity=28.4313725490196, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI27262626, Length=204, Percent_Identity=28.4313725490196, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI27477115, Length=234, Percent_Identity=28.6324786324786, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI31657092, Length=209, Percent_Identity=27.7511961722488, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI105990541, Length=202, Percent_Identity=29.2079207920792, Blast_Score=79, Evalue=8e-15,
Organism=Homo sapiens, GI150417984, Length=282, Percent_Identity=28.0141843971631, Blast_Score=79, Evalue=9e-15,
Organism=Homo sapiens, GI116734710, Length=214, Percent_Identity=27.5700934579439, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI47078218, Length=202, Percent_Identity=26.7326732673267, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI45446740, Length=202, Percent_Identity=26.7326732673267, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI66529005, Length=287, Percent_Identity=24.7386759581882, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI90421313, Length=235, Percent_Identity=28.5106382978723, Blast_Score=73, Evalue=5e-13,
Organism=Homo sapiens, GI89111135, Length=196, Percent_Identity=29.0816326530612, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI157502201, Length=189, Percent_Identity=32.8042328042328, Blast_Score=68, Evalue=2e-11,
Organism=Homo sapiens, GI157502203, Length=189, Percent_Identity=32.8042328042328, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI27881501, Length=194, Percent_Identity=22.680412371134, Blast_Score=66, Evalue=7e-11,
Organism=Homo sapiens, GI30795238, Length=194, Percent_Identity=22.680412371134, Blast_Score=66, Evalue=7e-11,
Organism=Homo sapiens, GI4557481, Length=196, Percent_Identity=25, Blast_Score=65, Evalue=9e-11,
Organism=Escherichia coli, GI1786398, Length=201, Percent_Identity=32.8358208955224, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1790467, Length=244, Percent_Identity=28.2786885245902, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1787758, Length=247, Percent_Identity=30.7692307692308, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI87081782, Length=375, Percent_Identity=24.8, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788761, Length=198, Percent_Identity=28.7878787878788, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787029, Length=212, Percent_Identity=29.2452830188679, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1786319, Length=230, Percent_Identity=28.695652173913, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788210, Length=207, Percent_Identity=28.9855072463768, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1790525, Length=214, Percent_Identity=26.1682242990654, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1789032, Length=212, Percent_Identity=25.9433962264151, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI48995001, Length=201, Percent_Identity=26.865671641791, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1789873, Length=199, Percent_Identity=32.1608040201005, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI87081709, Length=199, Percent_Identity=28.643216080402, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1787547, Length=218, Percent_Identity=25.6880733944954, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1786703, Length=220, Percent_Identity=31.3636363636364, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI48994943, Length=210, Percent_Identity=29.0476190476191, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI87081791, Length=213, Percent_Identity=23.943661971831, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1786563, Length=191, Percent_Identity=27.2251308900524, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787105, Length=204, Percent_Identity=29.9019607843137, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1787041, Length=219, Percent_Identity=30.5936073059361, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1788450, Length=205, Percent_Identity=28.2926829268293, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1789962, Length=208, Percent_Identity=26.9230769230769, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786803, Length=228, Percent_Identity=25, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790739, Length=207, Percent_Identity=25.6038647342995, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1787712, Length=196, Percent_Identity=26.530612244898, Blast_Score=62, Evalue=8e-11,
Organism=Escherichia coli, GI87082267, Length=203, Percent_Identity=25.615763546798, Blast_Score=62, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=199, Percent_Identity=25.6281407035176, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17510237, Length=263, Percent_Identity=25.8555133079848, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17565586, Length=196, Percent_Identity=25.5102040816327, Blast_Score=79, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17539902, Length=239, Percent_Identity=25.9414225941423, Blast_Score=72, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17569081, Length=199, Percent_Identity=29.1457286432161, Blast_Score=71, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71983516, Length=214, Percent_Identity=26.6355140186916, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71983510, Length=214, Percent_Identity=26.6355140186916, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71983523, Length=214, Percent_Identity=26.6355140186916, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71992070, Length=203, Percent_Identity=29.5566502463054, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71992066, Length=203, Percent_Identity=29.5566502463054, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI86564969, Length=203, Percent_Identity=29.5566502463054, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI25146765, Length=203, Percent_Identity=29.5566502463054, Blast_Score=67, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6321720, Length=200, Percent_Identity=29, Blast_Score=73, Evalue=9e-14,
Organism=Drosophila melanogaster, GI221512771, Length=193, Percent_Identity=28.4974093264249, Blast_Score=88, Evalue=1e-17,
Organism=Drosophila melanogaster, GI116007184, Length=191, Percent_Identity=29.3193717277487, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI221500365, Length=191, Percent_Identity=29.3193717277487, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24643674, Length=244, Percent_Identity=25, Blast_Score=82, Evalue=9e-16,
Organism=Drosophila melanogaster, GI24648314, Length=216, Percent_Identity=27.3148148148148, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24666092, Length=200, Percent_Identity=25.5, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI28573573, Length=201, Percent_Identity=25.3731343283582, Blast_Score=69, Evalue=8e-12,
Organism=Drosophila melanogaster, GI28573571, Length=201, Percent_Identity=25.3731343283582, Blast_Score=69, Evalue=8e-12,
Organism=Drosophila melanogaster, GI281362751, Length=259, Percent_Identity=24.3243243243243, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24650853, Length=260, Percent_Identity=24.2307692307692, Blast_Score=65, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 44854; Mature: 44723

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSQPLAPPPMQPAQPAASAPSAPPAPGAPVVIRASGVGKKFVAYHKRATSLKERFVRRD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCC
TTSGEDFWALRDIDVEIGRGQTVGLAGANGSGKSTLLKVLAGILRPTHGDVSVSGRIASL
CCCCCCEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEECHHHHHH
LELGAGFNGELSGRDNVYLNASLLGLSKREIDRLFDSIVDFSELRHKIDDEVKHYSSGQY
HHHCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
VRLGFAVAVHVDPDVLLVDEVLAVGDEAFQRKCLAKIAQFRDEGRTILFVTHSLDLIENM
EEEEEEEEEEECCCEEEHHHHHHHCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
CDRILVLESGGLIFDGQPVVGTKLLRQRLGSLPADSPIPFDLAPVKPTAVAFSRNPGGPT
HHEEEEEECCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC
EVQYDPGEQLTVSVELDLTDSAPQYVYLHVEIMGQGEVPIWMMETPPGGVSPGPGTAVVD
CEEECCCCEEEEEEEEEECCCCCCEEEEEEEEEECCCCCEEEEECCCCCCCCCCCCCHHH
FVVPRLPELLGAFAINVRVSDAATGQPVTVRRFEELFGVSGPQVAGLLKVDYEARLRR
HHHHHHHHHHHHEEEEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEEECHHHHCCC
>Mature Secondary Structure 
PSQPLAPPPMQPAQPAASAPSAPPAPGAPVVIRASGVGKKFVAYHKRATSLKERFVRRD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCC
TTSGEDFWALRDIDVEIGRGQTVGLAGANGSGKSTLLKVLAGILRPTHGDVSVSGRIASL
CCCCCCEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEECHHHHHH
LELGAGFNGELSGRDNVYLNASLLGLSKREIDRLFDSIVDFSELRHKIDDEVKHYSSGQY
HHHCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
VRLGFAVAVHVDPDVLLVDEVLAVGDEAFQRKCLAKIAQFRDEGRTILFVTHSLDLIENM
EEEEEEEEEEECCCEEEHHHHHHHCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
CDRILVLESGGLIFDGQPVVGTKLLRQRLGSLPADSPIPFDLAPVKPTAVAFSRNPGGPT
HHEEEEEECCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC
EVQYDPGEQLTVSVELDLTDSAPQYVYLHVEIMGQGEVPIWMMETPPGGVSPGPGTAVVD
CEEECCCCEEEEEEEEEECCCCCCEEEEEEEEEECCCCCEEEEECCCCCCCCCCCCCHHH
FVVPRLPELLGAFAINVRVSDAATGQPVTVRRFEELFGVSGPQVAGLLKVDYEARLRR
HHHHHHHHHHHHEEEEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEEECHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8491726 [H]