| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158317426
Identifier: 158317426
GI number: 158317426
Start: 6893542
End: 6894837
Strand: Direct
Name: 158317426
Synonym: Franean1_5678
Alternate gene names: NA
Gene position: 6893542-6894837 (Clockwise)
Preceding gene: 158317425
Following gene: 158317433
Centisome position: 76.75
GC content: 75.39
Gene sequence:
>1296_bases ATGGGGACGACACCCCGTCGCTGGCCTGACACTGAAGTCGTGCCGACGCTGTCCGACGACGCCATTGCCGCGCTCACCGC GGACCTCGCCCCGCTCGACGCCGATCTGACCGCCCGCTTCCCCGGCGATCCGGGCACCCGCCAGCCCGTCCACACCTGCT ATCTGCCCGCCGACCGGCTGCACCCGGACGTCGTTCTCGAGTGGGGCGAAGCCGCCCGGGAGGCGCTGCGCCACCATGCT CCGGATCCGGATGCCCTGGCCGCGGCGACCGCGGGTGACTCCGACCCGGCGATCGCCGCCGCCGTGTACGCGCACGTCGT GCAGGCGCTGACCGTCGAGCCGATCCAGGATCTGCGGGTCGATCTCGAGGACGGGTACGGGACCCGCCCGGACGAGGTCG AGGACGCCGACGCCGTGCAGGCGGCGCAGGCCCTGCGCACCGCGGCGGCGGCCGGCGCGCTGCCAGCCTCCTACGGGCTG CGCCCGAAGTCGCTGGACGCCGCCGTGCGGGCCCGGGGGCTGCGCAGCCTCGATCTGTTCCTCACCACCCTCGCCGGTGA TGGTGGGGAGGGCGGCCTGCCACCCGGCCTCGTCGTGACCCTGCCGAAGGTGAGCGCGCCCGAGCAGGTGATCGTGTTCA GCGAGGTCCTCGCCGAGCTGGAACGGCAGCTCGGCATCCCGCCGGTCGCGCTGGAGATCCAGGTCGAGACGCCCGCCGCG GTCCTGAGCCTGCCGGCGCTGGTCGGTGCCGCGCCGGGACGTCTGACCGGGCTACACGTGGGCACCTACGACTATTCCGC GGCACTCGGGATCGCCGCCGAGTACCAGGCCAGCGATCATCCGGGGGTCGAGCTCGCCACGGCGCTGATGCAGTTGGCCG CCGCGGGCACCGGGATCCGCGTGGCCGACGGCTCGTCCAACGTGCTGCCGGTGGGCCGGGCCTCCGACGTGCGCTCCGCG TGGCGCCGGCATGCCGGGCTGGTCCGCCGGGCTTGGTCGAGAGGTCTCTACCAGGGGTGGGATCTGCATCCCGGCCAGCT CGTCAGCCGGCACGCGGCGGTGGCGGGCTGCCTGCTCACCGGGCTGCCCGACGCCCTGCGGCGGCTGACGGACTACGCAG CCGCCCGCACGTCGGGATCGGTCGCCGACGAGCCGGCGACCGCGCGTGCCCTCGCCGGGCACGTCCTGCGCGCGGTGGAC GCCCGCCTGGTCGACGACGCGCGGCTGCGGGCCGCCGGTCTGGACGAGGAGACGGTCGCCCGCCTCGGAGGCCGGCCTCC GCAGGTCCCGCGCTGA
Upstream 100 bases:
>100_bases GGCGGGAGCCACTGGGCACGACGCAGTTGCAAGCCAGAGCAGGTGGGCCGGGCCGCCTGCAATCGGCGGACGGCTCGGCT CGGCATCTCTGACACGCGTG
Downstream 100 bases:
>100_bases CCCGCCGGACCGGGCGGGTCAGGCCGGGCCGGGTCAGCTGCCGCGGTAGGTGGAGTAGCCGTACGGCGCAAGTAGAAGGG GCACGTGATGGTGGTCGGCC
Product: HpcH/HpaI aldolase
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 431; Mature: 430
Protein sequence:
>431_residues MGTTPRRWPDTEVVPTLSDDAIAALTADLAPLDADLTARFPGDPGTRQPVHTCYLPADRLHPDVVLEWGEAAREALRHHA PDPDALAAATAGDSDPAIAAAVYAHVVQALTVEPIQDLRVDLEDGYGTRPDEVEDADAVQAAQALRTAAAAGALPASYGL RPKSLDAAVRARGLRSLDLFLTTLAGDGGEGGLPPGLVVTLPKVSAPEQVIVFSEVLAELERQLGIPPVALEIQVETPAA VLSLPALVGAAPGRLTGLHVGTYDYSAALGIAAEYQASDHPGVELATALMQLAAAGTGIRVADGSSNVLPVGRASDVRSA WRRHAGLVRRAWSRGLYQGWDLHPGQLVSRHAAVAGCLLTGLPDALRRLTDYAAARTSGSVADEPATARALAGHVLRAVD ARLVDDARLRAAGLDEETVARLGGRPPQVPR
Sequences:
>Translated_431_residues MGTTPRRWPDTEVVPTLSDDAIAALTADLAPLDADLTARFPGDPGTRQPVHTCYLPADRLHPDVVLEWGEAAREALRHHA PDPDALAAATAGDSDPAIAAAVYAHVVQALTVEPIQDLRVDLEDGYGTRPDEVEDADAVQAAQALRTAAAAGALPASYGL RPKSLDAAVRARGLRSLDLFLTTLAGDGGEGGLPPGLVVTLPKVSAPEQVIVFSEVLAELERQLGIPPVALEIQVETPAA VLSLPALVGAAPGRLTGLHVGTYDYSAALGIAAEYQASDHPGVELATALMQLAAAGTGIRVADGSSNVLPVGRASDVRSA WRRHAGLVRRAWSRGLYQGWDLHPGQLVSRHAAVAGCLLTGLPDALRRLTDYAAARTSGSVADEPATARALAGHVLRAVD ARLVDDARLRAAGLDEETVARLGGRPPQVPR >Mature_430_residues GTTPRRWPDTEVVPTLSDDAIAALTADLAPLDADLTARFPGDPGTRQPVHTCYLPADRLHPDVVLEWGEAAREALRHHAP DPDALAAATAGDSDPAIAAAVYAHVVQALTVEPIQDLRVDLEDGYGTRPDEVEDADAVQAAQALRTAAAAGALPASYGLR PKSLDAAVRARGLRSLDLFLTTLAGDGGEGGLPPGLVVTLPKVSAPEQVIVFSEVLAELERQLGIPPVALEIQVETPAAV LSLPALVGAAPGRLTGLHVGTYDYSAALGIAAEYQASDHPGVELATALMQLAAAGTGIRVADGSSNVLPVGRASDVRSAW RRHAGLVRRAWSRGLYQGWDLHPGQLVSRHAAVAGCLLTGLPDALRRLTDYAAARTSGSVADEPATARALAGHVLRAVDA RLVDDARLRAAGLDEETVARLGGRPPQVPR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44857; Mature: 44726
Theoretical pI: Translated: 4.95; Mature: 4.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.2 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGTTPRRWPDTEVVPTLSDDAIAALTADLAPLDADLTARFPGDPGTRQPVHTCYLPADRL CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEECCCCCCCCCCCEEEECCHHHC HPDVVLEWGEAAREALRHHAPDPDALAAATAGDSDPAIAAAVYAHVVQALTVEPIQDLRV CHHHEEHHHHHHHHHHHHCCCCCHHHEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHE DLEDGYGTRPDEVEDADAVQAAQALRTAAAAGALPASYGLRPKSLDAAVRARGLRSLDLF ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHCCCHHHHHH LTTLAGDGGEGGLPPGLVVTLPKVSAPEQVIVFSEVLAELERQLGIPPVALEIQVETPAA HHHHCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHH VLSLPALVGAAPGRLTGLHVGTYDYSAALGIAAEYQASDHPGVELATALMQLAAAGTGIR HHHHHHHHCCCCCCEEEEEECCCCHHHHHCEEEECCCCCCCCHHHHHHHHHHHHCCCCEE VADGSSNVLPVGRASDVRSAWRRHAGLVRRAWSRGLYQGWDLHPGQLVSRHAAVAGCLLT EECCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH GLPDALRRLTDYAAARTSGSVADEPATARALAGHVLRAVDARLVDDARLRAAGLDEETVA CCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH RLGGRPPQVPR HHCCCCCCCCC >Mature Secondary Structure GTTPRRWPDTEVVPTLSDDAIAALTADLAPLDADLTARFPGDPGTRQPVHTCYLPADRL CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEECCCCCCCCCCCEEEECCHHHC HPDVVLEWGEAAREALRHHAPDPDALAAATAGDSDPAIAAAVYAHVVQALTVEPIQDLRV CHHHEEHHHHHHHHHHHHCCCCCHHHEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHE DLEDGYGTRPDEVEDADAVQAAQALRTAAAAGALPASYGLRPKSLDAAVRARGLRSLDLF ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHCCCHHHHHH LTTLAGDGGEGGLPPGLVVTLPKVSAPEQVIVFSEVLAELERQLGIPPVALEIQVETPAA HHHHCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHH VLSLPALVGAAPGRLTGLHVGTYDYSAALGIAAEYQASDHPGVELATALMQLAAAGTGIR HHHHHHHHCCCCCCEEEEEECCCCHHHHHCEEEECCCCCCCCHHHHHHHHHHHHCCCCEE VADGSSNVLPVGRASDVRSAWRRHAGLVRRAWSRGLYQGWDLHPGQLVSRHAAVAGCLLT EECCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH GLPDALRRLTDYAAARTSGSVADEPATARALAGHVLRAVDARLVDDARLRAAGLDEETVA CCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH RLGGRPPQVPR HHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA