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The map label for this gene is ydcM [C]

Identifier: 158317425

GI number: 158317425

Start: 6891454

End: 6892782

Strand: Direct

Name: ydcM [C]

Synonym: Franean1_5677

Alternate gene names: 158317425

Gene position: 6891454-6892782 (Clockwise)

Preceding gene: 158317424

Following gene: 158317426

Centisome position: 76.72

GC content: 71.63

Gene sequence:

>1329_bases
ATGAGGACGTTGCAGGCGTACCGGTTCGCGCTCGACCCGAACGACGCCCAGGCCGCGAACCTGCGTCGCCACGCGGGGGC
GGCCCGGTTCGCCTACAACTGGGGCCTGGCCCGGGTGAAGGCCACGTTCGCGCAGCGCGACGCGGAGAAGTCCTACGGCC
TGGACGGCGACCTGCTCACCCCGGTGCCGTGGACGCTGCCCGCGCTGCGGCTTGCCTGGAACGCCGCCAAGCGGGACGTC
GCGCCCTGGTGGGACGAGTGCTCGAAGGAGGCGTACTCGGCCGGGCTGGACCAGTTGGCCCGTGCGTTGAAGAACTTCAC
CGACTCCCGGAAGGGAAAGCGCAACGGCCGCCGGGTCGGTTTTCCCCGGTTCAAGAAGCGCGGGAAGGCCCGCGACTCGT
TCCGCTACACGACCGGTGCCTACGGCCCCGCGACCGATCTGTACGTGAAACTGCCCCGGATCGGCCGGGTCAAGGTCGGC
GAGCCGATGGGCGCGCTCACGTCGCGGCTGGCGGATGGCCGGGCGCGGCTGGGTGGCGCGACGGTGTCCCGGACGGCTGG
CCGCTGGTTCGTGGCGTTCACCGTCGACACCGACCGGGACGTTTCCGAACGGCCGACCCGCCGTCAGTGGACGGGCGGCA
CGGTCGGCGTCGACCTGGGCGTGAAACACCTCGCGGTCCTCTCCACCGGCGAGACGGTGGCGAACCCGAAACGGCACGCC
GCCGCGCTGCGGAAACTGCGCCGCGCGTCGCGGGCCTATGCCCGGTCGAAGCCGGGCAGCGCTGGGCGCCGGCAGCGCGC
CGCCGGGCTCGCGACGATCCATGCCCGGGTCGCGAACCAGCGCCGCGACGGGCTGCACAAGCTCACGACACGGCTCGCCC
GGTCCCACGACGTGATCGTGGTCGAGGATCTACACGTCGCCGGGATGGTCCGCAACCGGCGGCTCGCCCGCGCCGTCTCG
GACGTCGGGATGGGTGAGATCCGCCGGCAACTCGACTACAAGACCCGCTGGTACGGTTCGCGGCTGCACGTCGCGGACCG
CTGGTATCCGTCCTCGAAGACCTGTTCCGGCTGCGGCTGGCGAAACCCAAGCCTGACGCTGTCGGACCGCACGTTCGCCT
GCCAGTCCTGCGGGCTGGTGGCCGACCGCGACCACAACGCCGCGATCAACCTCAGACACCAGGTCGCCGCCAGTACGTCG
GAGACCGTAAACGCCCGTGGAGCCGACCATAAGACCCGCACGAGCGGGCAGGTGGCTGGGAAGCGGGAACCTGGCACGGC
CAAGGCCGGTCAGACCAGGAGTGCCGGCGCGCAAGTGCCGGCGGCGTGA

Upstream 100 bases:

>100_bases
TCACCGAGATCCTGACCTCGATGTGCGCCCGGCTGTACGGCCGCCGCGCCGCCGCGAACCGAGCCCGCCGCGCGGTCGCC
GCCGCCACTGAGGCGGCCGA

Downstream 100 bases:

>100_bases
ACGGCGAGCGCTATCGCTCATCGAGCCGCAACGGCCCGGCCGCGCCGACCACGCCATCCACAGGGGCATCCCAGTGATCA
ACTGCTCGAGGCTCCTCGTG

Product: IS605 family transposase OrfB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 442; Mature: 442

Protein sequence:

>442_residues
MRTLQAYRFALDPNDAQAANLRRHAGAARFAYNWGLARVKATFAQRDAEKSYGLDGDLLTPVPWTLPALRLAWNAAKRDV
APWWDECSKEAYSAGLDQLARALKNFTDSRKGKRNGRRVGFPRFKKRGKARDSFRYTTGAYGPATDLYVKLPRIGRVKVG
EPMGALTSRLADGRARLGGATVSRTAGRWFVAFTVDTDRDVSERPTRRQWTGGTVGVDLGVKHLAVLSTGETVANPKRHA
AALRKLRRASRAYARSKPGSAGRRQRAAGLATIHARVANQRRDGLHKLTTRLARSHDVIVVEDLHVAGMVRNRRLARAVS
DVGMGEIRRQLDYKTRWYGSRLHVADRWYPSSKTCSGCGWRNPSLTLSDRTFACQSCGLVADRDHNAAINLRHQVAASTS
ETVNARGADHKTRTSGQVAGKREPGTAKAGQTRSAGAQVPAA

Sequences:

>Translated_442_residues
MRTLQAYRFALDPNDAQAANLRRHAGAARFAYNWGLARVKATFAQRDAEKSYGLDGDLLTPVPWTLPALRLAWNAAKRDV
APWWDECSKEAYSAGLDQLARALKNFTDSRKGKRNGRRVGFPRFKKRGKARDSFRYTTGAYGPATDLYVKLPRIGRVKVG
EPMGALTSRLADGRARLGGATVSRTAGRWFVAFTVDTDRDVSERPTRRQWTGGTVGVDLGVKHLAVLSTGETVANPKRHA
AALRKLRRASRAYARSKPGSAGRRQRAAGLATIHARVANQRRDGLHKLTTRLARSHDVIVVEDLHVAGMVRNRRLARAVS
DVGMGEIRRQLDYKTRWYGSRLHVADRWYPSSKTCSGCGWRNPSLTLSDRTFACQSCGLVADRDHNAAINLRHQVAASTS
ETVNARGADHKTRTSGQVAGKREPGTAKAGQTRSAGAQVPAA
>Mature_442_residues
MRTLQAYRFALDPNDAQAANLRRHAGAARFAYNWGLARVKATFAQRDAEKSYGLDGDLLTPVPWTLPALRLAWNAAKRDV
APWWDECSKEAYSAGLDQLARALKNFTDSRKGKRNGRRVGFPRFKKRGKARDSFRYTTGAYGPATDLYVKLPRIGRVKVG
EPMGALTSRLADGRARLGGATVSRTAGRWFVAFTVDTDRDVSERPTRRQWTGGTVGVDLGVKHLAVLSTGETVANPKRHA
AALRKLRRASRAYARSKPGSAGRRQRAAGLATIHARVANQRRDGLHKLTTRLARSHDVIVVEDLHVAGMVRNRRLARAVS
DVGMGEIRRQLDYKTRWYGSRLHVADRWYPSSKTCSGCGWRNPSLTLSDRTFACQSCGLVADRDHNAAINLRHQVAASTS
ETVNARGADHKTRTSGQVAGKREPGTAKAGQTRSAGAQVPAA

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=386, Percent_Identity=31.3471502590674, Blast_Score=155, Evalue=4e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 48588; Mature: 48588

Theoretical pI: Translated: 11.77; Mature: 11.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTLQAYRFALDPNDAQAANLRRHAGAARFAYNWGLARVKATFAQRDAEKSYGLDGDLLT
CCCCEEEEEEECCCCHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCC
PVPWTLPALRLAWNAAKRDVAPWWDECSKEAYSAGLDQLARALKNFTDSRKGKRNGRRVG
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
FPRFKKRGKARDSFRYTTGAYGPATDLYVKLPRIGRVKVGEPMGALTSRLADGRARLGGA
CHHHHHCCCCCCCCEEECCCCCCCCCEEEECCCCCCEECCCCHHHHHHHHHCCHHHHCCC
TVSRTAGRWFVAFTVDTDRDVSERPTRRQWTGGTVGVDLGVKHLAVLSTGETVANPKRHA
HHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEHHHCHHEEEEEECCCHHCCHHHHH
AALRKLRRASRAYARSKPGSAGRRQRAAGLATIHARVANQRRDGLHKLTTRLARSHDVIV
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
VEDLHVAGMVRNRRLARAVSDVGMGEIRRQLDYKTRWYGSRLHVADRWYPSSKTCSGCGW
EECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCC
RNPSLTLSDRTFACQSCGLVADRDHNAAINLRHQVAASTSETVNARGADHKTRTSGQVAG
CCCCEEECCCCHHHHHCCCEEECCCCCEEEEHHHHHCCCCHHHCCCCCCCCCCCCCCCCC
KREPGTAKAGQTRSAGAQVPAA
CCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRTLQAYRFALDPNDAQAANLRRHAGAARFAYNWGLARVKATFAQRDAEKSYGLDGDLLT
CCCCEEEEEEECCCCHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCC
PVPWTLPALRLAWNAAKRDVAPWWDECSKEAYSAGLDQLARALKNFTDSRKGKRNGRRVG
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
FPRFKKRGKARDSFRYTTGAYGPATDLYVKLPRIGRVKVGEPMGALTSRLADGRARLGGA
CHHHHHCCCCCCCCEEECCCCCCCCCEEEECCCCCCEECCCCHHHHHHHHHCCHHHHCCC
TVSRTAGRWFVAFTVDTDRDVSERPTRRQWTGGTVGVDLGVKHLAVLSTGETVANPKRHA
HHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEHHHCHHEEEEEECCCHHCCHHHHH
AALRKLRRASRAYARSKPGSAGRRQRAAGLATIHARVANQRRDGLHKLTTRLARSHDVIV
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
VEDLHVAGMVRNRRLARAVSDVGMGEIRRQLDYKTRWYGSRLHVADRWYPSSKTCSGCGW
EECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCC
RNPSLTLSDRTFACQSCGLVADRDHNAAINLRHQVAASTSETVNARGADHKTRTSGQVAG
CCCCEEECCCCHHHHHCCCEEECCCCCEEEEHHHHHCCCCHHHCCCCCCCCCCCCCCCCC
KREPGTAKAGQTRSAGAQVPAA
CCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]