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The map label for this gene is yjfH [C]

Identifier: 158317422

GI number: 158317422

Start: 6886172

End: 6887170

Strand: Reverse

Name: yjfH [C]

Synonym: Franean1_5673

Alternate gene names: 158317422

Gene position: 6887170-6886172 (Counterclockwise)

Preceding gene: 158317427

Following gene: 158317420

Centisome position: 76.68

GC content: 70.27

Gene sequence:

>999_bases
ATGCGGTCATGGGCGCTGATTCTGCTGTTTCGGCGTTACACACGGATGACATGTGGGGCGGGTGGTGTGTTGGACGGGTC
CGGCGTGCTTGAGGAGCGCGAGCGGCGGATCGTGGCGATCGACGACCCTGCCGATCCTCGGGTTGAGGACTATGTGGCGC
TGACCGACGTGGCGCTGCGCCGGCGGCGTGAACCCGCGGAGGGGTTGTTCATCGCGGAGGGCGAGAGGGTGATCGACCGC
GCGCTACGGGCGGGATACCGGCCGCGCTCGGTTCTGGTCTCGCCGGCGCGGCTGGGGGGAGTTCCGGAGGGTTTCTGGTC
CACGCCGACGCACGGCGGGCACGGCGAGTGCGGCGGGCATGGCGAATCTGCCGGGCATGACGAGCACAGCGGTCGCGAGC
GGCCGGACCACCATGAGGCGCCGGTCTATGTTGCGGGGCCAGCCGTGCTTGCGCAGATCACCGGCTTTGAGGTGCACCGG
GGTGCGCTGGCGTCGATGTGCCGTCGTCCGCTGCTCAACCCCGTGGAACTGCTCCGCGTCGCGAGGCGCGTGCTGGTCTG
CGAGGACCTGGTCAGCCACACCAATCTCGGCGCGATCTTCCGGTCGGCGGCCGGGCTCGGCATGGACGCGGTCATGCTGA
GCCCGCGGTGCGCGGATCCGCTCTACCGGCGCTCCGTGCGGGTGTCGATGGGCGAGGTCTTCGCGGTTCCCTACGCCCGG
CTTGATCCGTGGCCGGGAGCGTTGTCCCTGCTCGGTGAGGCTGGGTTCGAGGTGCTCGCGCTGACGCCCGCGTCCGACGC
TGACGAACTGGCGGTCGCAACGGCCGGTCCCGGTGATCGCGTTGCTCTGTTACTGGGGACGGAAGGCCAGGGCCTGACCG
GCGAGGTCCTGGCCACGGCGACCCGGCGGGTTCGGATTCCGATGGCCCACGGCGTGGATTCGCTGAACGTGGCGGCGACG
GCGGCAATCGCCTGTTATGTGCTGGGCGTCCGCCCGTGA

Upstream 100 bases:

>100_bases
ACAGGAAGATGATCCGGGCGTTGCCCCGCCGGTGCGTCGCCAGCCGCGGCCGTGCCGCTTGGCCTGGCTGGGCCGCCTGG
GCTGCTGGTCGCGGAGCCGG

Downstream 100 bases:

>100_bases
CGACCGCTCAGGCCGACGACGCCAGCCAGCTTCCCACCGGACCGGGAAGATTCCTGACGGCCCAGAAGACGGCGATCAAC
GCAGGCAGCAGCGGCAACAG

Product: tRNA/rRNA methyltransferase SpoU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 332

Protein sequence:

>332_residues
MRSWALILLFRRYTRMTCGAGGVLDGSGVLEERERRIVAIDDPADPRVEDYVALTDVALRRRREPAEGLFIAEGERVIDR
ALRAGYRPRSVLVSPARLGGVPEGFWSTPTHGGHGECGGHGESAGHDEHSGRERPDHHEAPVYVAGPAVLAQITGFEVHR
GALASMCRRPLLNPVELLRVARRVLVCEDLVSHTNLGAIFRSAAGLGMDAVMLSPRCADPLYRRSVRVSMGEVFAVPYAR
LDPWPGALSLLGEAGFEVLALTPASDADELAVATAGPGDRVALLLGTEGQGLTGEVLATATRRVRIPMAHGVDSLNVAAT
AAIACYVLGVRP

Sequences:

>Translated_332_residues
MRSWALILLFRRYTRMTCGAGGVLDGSGVLEERERRIVAIDDPADPRVEDYVALTDVALRRRREPAEGLFIAEGERVIDR
ALRAGYRPRSVLVSPARLGGVPEGFWSTPTHGGHGECGGHGESAGHDEHSGRERPDHHEAPVYVAGPAVLAQITGFEVHR
GALASMCRRPLLNPVELLRVARRVLVCEDLVSHTNLGAIFRSAAGLGMDAVMLSPRCADPLYRRSVRVSMGEVFAVPYAR
LDPWPGALSLLGEAGFEVLALTPASDADELAVATAGPGDRVALLLGTEGQGLTGEVLATATRRVRIPMAHGVDSLNVAAT
AAIACYVLGVRP
>Mature_332_residues
MRSWALILLFRRYTRMTCGAGGVLDGSGVLEERERRIVAIDDPADPRVEDYVALTDVALRRRREPAEGLFIAEGERVIDR
ALRAGYRPRSVLVSPARLGGVPEGFWSTPTHGGHGECGGHGESAGHDEHSGRERPDHHEAPVYVAGPAVLAQITGFEVHR
GALASMCRRPLLNPVELLRVARRVLVCEDLVSHTNLGAIFRSAAGLGMDAVMLSPRCADPLYRRSVRVSMGEVFAVPYAR
LDPWPGALSLLGEAGFEVLALTPASDADELAVATAGPGDRVALLLGTEGQGLTGEVLATATRRVRIPMAHGVDSLNVAAT
AAIACYVLGVRP

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537 [H]

Pfam domain/function: PF00588 SpoU_methylase [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 35454; Mature: 35454

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSWALILLFRRYTRMTCGAGGVLDGSGVLEERERRIVAIDDPADPRVEDYVALTDVALR
CCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHH
RRREPAEGLFIAEGERVIDRALRAGYRPRSVLVSPARLGGVPEGFWSTPTHGGHGECGGH
HCCCCCCCEEEECCHHHHHHHHHCCCCCCCEEECHHHHCCCCCCCCCCCCCCCCCCCCCC
GESAGHDEHSGRERPDHHEAPVYVAGPAVLAQITGFEVHRGALASMCRRPLLNPVELLRV
CCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHH
ARRVLVCEDLVSHTNLGAIFRSAAGLGMDAVMLSPRCADPLYRRSVRVSMGEVFAVPYAR
HHHHHHHHHHHHHCCHHHHHHHHCCCCCHHEEECCCCCCHHHHHHHHHCCCCEEECCHHH
LDPWPGALSLLGEAGFEVLALTPASDADELAVATAGPGDRVALLLGTEGQGLTGEVLATA
CCCCCHHHHHHHHCCCEEEEECCCCCCCCEEEEECCCCCEEEEEEECCCCCCCHHHHHHH
TRRVRIPMAHGVDSLNVAATAAIACYVLGVRP
HHEEEEEHHHCCCCHHHHHHHHHHHHEEECCC
>Mature Secondary Structure
MRSWALILLFRRYTRMTCGAGGVLDGSGVLEERERRIVAIDDPADPRVEDYVALTDVALR
CCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHH
RRREPAEGLFIAEGERVIDRALRAGYRPRSVLVSPARLGGVPEGFWSTPTHGGHGECGGH
HCCCCCCCEEEECCHHHHHHHHHCCCCCCCEEECHHHHCCCCCCCCCCCCCCCCCCCCCC
GESAGHDEHSGRERPDHHEAPVYVAGPAVLAQITGFEVHRGALASMCRRPLLNPVELLRV
CCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHH
ARRVLVCEDLVSHTNLGAIFRSAAGLGMDAVMLSPRCADPLYRRSVRVSMGEVFAVPYAR
HHHHHHHHHHHHHCCHHHHHHHHCCCCCHHEEECCCCCCHHHHHHHHHCCCCEEECCHHH
LDPWPGALSLLGEAGFEVLALTPASDADELAVATAGPGDRVALLLGTEGQGLTGEVLATA
CCCCCHHHHHHHHCCCEEEEECCCCCCCCEEEEECCCCCEEEEEEECCCCCCCHHHHHHH
TRRVRIPMAHGVDSLNVAATAAIACYVLGVRP
HHEEEEEHHHCCCCHHHHHHHHHHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]