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The map label for this gene is helD [H]

Identifier: 158317333

GI number: 158317333

Start: 6767268

End: 6769892

Strand: Reverse

Name: helD [H]

Synonym: Franean1_5583

Alternate gene names: 158317333

Gene position: 6769892-6767268 (Counterclockwise)

Preceding gene: 158317334

Following gene: 158317331

Centisome position: 75.37

GC content: 75.92

Gene sequence:

>2625_bases
GTGCCGACGACACGTGACGGAGAGCTCGCCCGTGAGCAGGCCTACGTCGACACCCTCTACGGCCGGTTGGACGAGGTCCG
GGAGACCACCAAAAGGCAACTCCGACAGGTGCTGCTCGAGGCTGGCACCGGCACGCCGCAGTCGATCGTGGAACGCGACG
TGTTCGCCGCGACGCATGCCGACCGGCTGGCCCGGCTCGACGCCGCCGAGGGGCGGCTGTGCTTCGGCGCGATGGACCAC
GCGGCCGGGGGGCGCACCTACATCGGCCGGATCGGGCTGTCCGACCAGGAGCAGGAGCCGATCCTGGTCGACTGGCGGGC
GCCCGTGGCCACCGCGTTCTACCAGGCGACCATCGCCGATCCGCGTGGCCTGACCCGCCGCCGCCACCTGCGCACCCGCG
GCCGGCGGGTCACCGGCCTCGCCGACGACCCGCTCGACCCCCGCGCCTATCTCGCGCAGGCCGGCGCCGCCGACGGGGCT
TCGGGGGCCGCCGAGGGCGATGCGGCCCCCGAAGCCGGCGCGGGCGCCGAAGCCGGGTTCGGCGCGACCGGGGACACGAT
GCTCCTCGAGGCGCTGTCCGCCCCGCGCACGGGCCGGATGCACGACATCGTCTCGACGCTGCAGGCCGAACAGGACAGGA
TCATCCGGGCGGCGGCGAACGCGGTGCTGGTGGTCGACGGTGGGCCGGGCACCGGCAAGACCGCCGTCGCGCTGCACCGT
GCCGCATATCTCCTCTACACCGATCGCGACCGGCTCGTCCGGTCCGGGGTGCTCGTGGTCGGCCCCAGCCCCGTCTTCCT
CCGCTACATCGAGCAGGTCCTGCCCTCCCTCGGCGAGACCGGAGTGGTGTTCGCGACCCCGGGACGGCTCTTCCCCGGCG
TGGACGCGACCGGCGAGGACCCGGTCGCCGCCGCGTCCCTCAAGGGCGACGCACGGATGGCCGACGTCATCGCCGGCGCG
GTCCGGGACCGCCAGCGGGCACCCGGCCGAGGGGTGCGGATCCGCCACGACGAGCACGACCTGCACCTGGACCGCGACAC
CATCGTCCGGGCCAGGACTCGGGCCCGCCGCAGCCGCCGCCCGCACAACTCCGCGCGCCGCGTGTTCATCCGCGAGCTGC
TCGGCGCGTTGACGAACCAGGTGGTCTCCCGGTTGCCCGGTGGCCTCTTCGAGCCCGAGGAGCGCTCGGAGATCACTTCA
GATCTGTGGGCGGACCCCGGGGTGCGGCGGGCCCTGAACGACCTGTGGCCGCTGCTCACCCCGGCCCGCCTGCTGGCCGA
CCTGTACGCCTCGCAGGAGCTCCTCGCCCGGGCCGCCGGTACCCGGCTCACCGCCGAGGAACGCGCCCTGCTGCGGCGCG
AGGGCCCGGCGGACGCGCCGGCGCGGCGCTCCGGCGAAACCCGCTCCGCCGAAACCGGCCGGATCCGCTGGACTCCGGCG
GACGTCGCACTGCTGGACGAGGCCGCGGAGCTGCTCGGCGACCCGGAGGAGGACGCCCGCCTCGACGAGGCGCGCCGCGC
CGCCGCCGAGCGCGCGGCCGAGCGGGAGTACGCCCGCGGCGTGCTGGAGATGCTCGGCCTCGACGACCGGCTCGACGCCG
ACACGGTCGCCGAGCGCTGGACCGCACCCCGCCAGCGCCGCGGCGCCGCCGAGTACGCGACCGGGGACCGGACCTGGACG
TTCGGCCACCTCATCGTCGACGAGGCCCAGGAGGTCTCGCCGATGCTGTGGCGCCTGCTTTGGCGGCGCTGCCCGGGGCG
CACCGCGACGCTCGTCGGGGATCTCGCCCAGGCGGCCCGCCCGCGGCCGCCGGAGAGCTGGGGCGAACTGCTGGGTCCGG
CTGTCGGTGCCCACTACACCGTCGAGCGGCTCACCGTGAACTACCGGACCCCCAGCGAGATCATGGATGTCGCGGCCGAC
GTGCTGACGGCGGCCGATCCCACGGCCGCGCCGCCCCTGTCGGTCCGCTCCGCCGGCCGGCGCCCGGACGCCGTCCGGAT
ACCATCCGCCGACGAGGCGCTCCTGCGGGGCGTGGTCGACGAGTCCGTGCGGGCCGCGGGCGAGGCGGCCGGGGGGCGGG
TCGCCGTGATCTGCCCTCCGGGGCGGACCGCGGCGATCCGGGCCGCCCTGCGCGCTGCCGTGCCCCAGCTCGCGCTGCCG
AGGCAGCCCGACGACCCGGACGACCGCCCGACCGGGACCCGGGAGCCGGCGGAGGCGGACCTGCTGGACGCGCCCGTCGC
CGTCCTCACCGTCGCGGAGTCCAAGGGCCTCGAGTTCGACGCCGTGGTCCTCGTCGAACCGGCCGAGATCCTGGCCGGCC
CGACCCGGGGCCTGGCGGATCTCTACGTGGCGCTGACCCGGGCCACCCGCGTGCTCACCGTGGTGCACACCGGGGAGCTC
CCGGGCGTCCTGCATCGGATGCCGGTGCGCGGTGGCCCGGCGACACCCGAGGCCGGCGCCGCCCCGAGGGCGACCAGTCG
CACCGAAGCCGAGGCCCGCACCGCCCCCGCCCACACCGACATCGATGACACCGACACCGATGACACCGACACCGGCGATG
CCGACACCGATGCCGGTCTCGGTGACCCGGTGGTCGGAGGCCGCCAGCTCAACCTGCTGTGGTGA

Upstream 100 bases:

>100_bases
GGCGGGATGATCCGGGTGTGGTGGGCTGTTGGCGCCCGCGTACCCGCACCGGGACCTCCTCCCGACCCGCCTCCCGCCAC
CCGACCCGAAGGGACATCCG

Downstream 100 bases:

>100_bases
CCTCCTTCCGGAGCTGGTGGTGGTACAGGCGCGCGTAGGCGCCGTCGGCCTGGATCAACTCGTCGTGGGTGCCGTGCTCG
ACCACGGAGCCGTCACCCAT

Product: putative helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 874; Mature: 873

Protein sequence:

>874_residues
MPTTRDGELAREQAYVDTLYGRLDEVRETTKRQLRQVLLEAGTGTPQSIVERDVFAATHADRLARLDAAEGRLCFGAMDH
AAGGRTYIGRIGLSDQEQEPILVDWRAPVATAFYQATIADPRGLTRRRHLRTRGRRVTGLADDPLDPRAYLAQAGAADGA
SGAAEGDAAPEAGAGAEAGFGATGDTMLLEALSAPRTGRMHDIVSTLQAEQDRIIRAAANAVLVVDGGPGTGKTAVALHR
AAYLLYTDRDRLVRSGVLVVGPSPVFLRYIEQVLPSLGETGVVFATPGRLFPGVDATGEDPVAAASLKGDARMADVIAGA
VRDRQRAPGRGVRIRHDEHDLHLDRDTIVRARTRARRSRRPHNSARRVFIRELLGALTNQVVSRLPGGLFEPEERSEITS
DLWADPGVRRALNDLWPLLTPARLLADLYASQELLARAAGTRLTAEERALLRREGPADAPARRSGETRSAETGRIRWTPA
DVALLDEAAELLGDPEEDARLDEARRAAAERAAEREYARGVLEMLGLDDRLDADTVAERWTAPRQRRGAAEYATGDRTWT
FGHLIVDEAQEVSPMLWRLLWRRCPGRTATLVGDLAQAARPRPPESWGELLGPAVGAHYTVERLTVNYRTPSEIMDVAAD
VLTAADPTAAPPLSVRSAGRRPDAVRIPSADEALLRGVVDESVRAAGEAAGGRVAVICPPGRTAAIRAALRAAVPQLALP
RQPDDPDDRPTGTREPAEADLLDAPVAVLTVAESKGLEFDAVVLVEPAEILAGPTRGLADLYVALTRATRVLTVVHTGEL
PGVLHRMPVRGGPATPEAGAAPRATSRTEAEARTAPAHTDIDDTDTDDTDTGDADTDAGLGDPVVGGRQLNLLW

Sequences:

>Translated_874_residues
MPTTRDGELAREQAYVDTLYGRLDEVRETTKRQLRQVLLEAGTGTPQSIVERDVFAATHADRLARLDAAEGRLCFGAMDH
AAGGRTYIGRIGLSDQEQEPILVDWRAPVATAFYQATIADPRGLTRRRHLRTRGRRVTGLADDPLDPRAYLAQAGAADGA
SGAAEGDAAPEAGAGAEAGFGATGDTMLLEALSAPRTGRMHDIVSTLQAEQDRIIRAAANAVLVVDGGPGTGKTAVALHR
AAYLLYTDRDRLVRSGVLVVGPSPVFLRYIEQVLPSLGETGVVFATPGRLFPGVDATGEDPVAAASLKGDARMADVIAGA
VRDRQRAPGRGVRIRHDEHDLHLDRDTIVRARTRARRSRRPHNSARRVFIRELLGALTNQVVSRLPGGLFEPEERSEITS
DLWADPGVRRALNDLWPLLTPARLLADLYASQELLARAAGTRLTAEERALLRREGPADAPARRSGETRSAETGRIRWTPA
DVALLDEAAELLGDPEEDARLDEARRAAAERAAEREYARGVLEMLGLDDRLDADTVAERWTAPRQRRGAAEYATGDRTWT
FGHLIVDEAQEVSPMLWRLLWRRCPGRTATLVGDLAQAARPRPPESWGELLGPAVGAHYTVERLTVNYRTPSEIMDVAAD
VLTAADPTAAPPLSVRSAGRRPDAVRIPSADEALLRGVVDESVRAAGEAAGGRVAVICPPGRTAAIRAALRAAVPQLALP
RQPDDPDDRPTGTREPAEADLLDAPVAVLTVAESKGLEFDAVVLVEPAEILAGPTRGLADLYVALTRATRVLTVVHTGEL
PGVLHRMPVRGGPATPEAGAAPRATSRTEAEARTAPAHTDIDDTDTDDTDTGDADTDAGLGDPVVGGRQLNLLW
>Mature_873_residues
PTTRDGELAREQAYVDTLYGRLDEVRETTKRQLRQVLLEAGTGTPQSIVERDVFAATHADRLARLDAAEGRLCFGAMDHA
AGGRTYIGRIGLSDQEQEPILVDWRAPVATAFYQATIADPRGLTRRRHLRTRGRRVTGLADDPLDPRAYLAQAGAADGAS
GAAEGDAAPEAGAGAEAGFGATGDTMLLEALSAPRTGRMHDIVSTLQAEQDRIIRAAANAVLVVDGGPGTGKTAVALHRA
AYLLYTDRDRLVRSGVLVVGPSPVFLRYIEQVLPSLGETGVVFATPGRLFPGVDATGEDPVAAASLKGDARMADVIAGAV
RDRQRAPGRGVRIRHDEHDLHLDRDTIVRARTRARRSRRPHNSARRVFIRELLGALTNQVVSRLPGGLFEPEERSEITSD
LWADPGVRRALNDLWPLLTPARLLADLYASQELLARAAGTRLTAEERALLRREGPADAPARRSGETRSAETGRIRWTPAD
VALLDEAAELLGDPEEDARLDEARRAAAERAAEREYARGVLEMLGLDDRLDADTVAERWTAPRQRRGAAEYATGDRTWTF
GHLIVDEAQEVSPMLWRLLWRRCPGRTATLVGDLAQAARPRPPESWGELLGPAVGAHYTVERLTVNYRTPSEIMDVAADV
LTAADPTAAPPLSVRSAGRRPDAVRIPSADEALLRGVVDESVRAAGEAAGGRVAVICPPGRTAAIRAALRAAVPQLALPR
QPDDPDDRPTGTREPAEADLLDAPVAVLTVAESKGLEFDAVVLVEPAEILAGPTRGLADLYVALTRATRVLTVVHTGELP
GVLHRMPVRGGPATPEAGAAPRATSRTEAEARTAPAHTDIDDTDTDDTDTGDADTDAGLGDPVVGGRQLNLLW

Specific function: Catalyzes the unwinding of duplex DNA in the 3' to 5' direction; this reaction is dependent on the hydrolysis of ATP [H]

COG id: COG3973

COG function: function code R; Superfamily I DNA and RNA helicases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 uvrD-like helicase ATP-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000212
- InterPro:   IPR014016 [H]

Pfam domain/function: PF00580 UvrD-helicase [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 93699; Mature: 93568

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTTRDGELAREQAYVDTLYGRLDEVRETTKRQLRQVLLEAGTGTPQSIVERDVFAATHA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
DRLARLDAAEGRLCFGAMDHAAGGRTYIGRIGLSDQEQEPILVDWRAPVATAFYQATIAD
HHHHHHHCCCCCEEEECHHHCCCCCEEEEECCCCCCCCCCEEEECCCHHHHHHHHHHCCC
PRGLTRRRHLRTRGRRVTGLADDPLDPRAYLAQAGAADGASGAAEGDAAPEAGAGAEAGF
CCCHHHHHHHHHCCCEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
GATGDTMLLEALSAPRTGRMHDIVSTLQAEQDRIIRAAANAVLVVDGGPGTGKTAVALHR
CCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHH
AAYLLYTDRDRLVRSGVLVVGPSPVFLRYIEQVLPSLGETGVVFATPGRLFPGVDATGED
HEEEEEECHHHHHHCCEEEECCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCC
PVAAASLKGDARMADVIAGAVRDRQRAPGRGVRIRHDEHDLHLDRDTIVRARTRARRSRR
CCEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCC
PHNSARRVFIRELLGALTNQVVSRLPGGLFEPEERSEITSDLWADPGVRRALNDLWPLLT
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
PARLLADLYASQELLARAAGTRLTAEERALLRREGPADAPARRSGETRSAETGRIRWTPA
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCH
DVALLDEAAELLGDPEEDARLDEARRAAAERAAEREYARGVLEMLGLDDRLDADTVAERW
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
TAPRQRRGAAEYATGDRTWTFGHLIVDEAQEVSPMLWRLLWRRCPGRTATLVGDLAQAAR
CCCHHHCCCCHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
PRPPESWGELLGPAVGAHYTVERLTVNYRTPSEIMDVAADVLTAADPTAAPPLSVRSAGR
CCCCHHHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCHHHHCCC
RPDAVRIPSADEALLRGVVDESVRAAGEAAGGRVAVICPPGRTAAIRAALRAAVPQLALP
CCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCC
RQPDDPDDRPTGTREPAEADLLDAPVAVLTVAESKGLEFDAVVLVEPAEILAGPTRGLAD
CCCCCCCCCCCCCCCCCCCHHHHCCEEEEEEECCCCCCEEEEEEECCHHHHCCCCCHHHH
LYVALTRATRVLTVVHTGELPGVLHRMPVRGGPATPEAGAAPRATSRTEAEARTAPAHTD
HHHHHHHHHHEEEEEECCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCC
IDDTDTDDTDTGDADTDAGLGDPVVGGRQLNLLW
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECC
>Mature Secondary Structure 
PTTRDGELAREQAYVDTLYGRLDEVRETTKRQLRQVLLEAGTGTPQSIVERDVFAATHA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
DRLARLDAAEGRLCFGAMDHAAGGRTYIGRIGLSDQEQEPILVDWRAPVATAFYQATIAD
HHHHHHHCCCCCEEEECHHHCCCCCEEEEECCCCCCCCCCEEEECCCHHHHHHHHHHCCC
PRGLTRRRHLRTRGRRVTGLADDPLDPRAYLAQAGAADGASGAAEGDAAPEAGAGAEAGF
CCCHHHHHHHHHCCCEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
GATGDTMLLEALSAPRTGRMHDIVSTLQAEQDRIIRAAANAVLVVDGGPGTGKTAVALHR
CCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHH
AAYLLYTDRDRLVRSGVLVVGPSPVFLRYIEQVLPSLGETGVVFATPGRLFPGVDATGED
HEEEEEECHHHHHHCCEEEECCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCC
PVAAASLKGDARMADVIAGAVRDRQRAPGRGVRIRHDEHDLHLDRDTIVRARTRARRSRR
CCEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCC
PHNSARRVFIRELLGALTNQVVSRLPGGLFEPEERSEITSDLWADPGVRRALNDLWPLLT
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
PARLLADLYASQELLARAAGTRLTAEERALLRREGPADAPARRSGETRSAETGRIRWTPA
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCH
DVALLDEAAELLGDPEEDARLDEARRAAAERAAEREYARGVLEMLGLDDRLDADTVAERW
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
TAPRQRRGAAEYATGDRTWTFGHLIVDEAQEVSPMLWRLLWRRCPGRTATLVGDLAQAAR
CCCHHHCCCCHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
PRPPESWGELLGPAVGAHYTVERLTVNYRTPSEIMDVAADVLTAADPTAAPPLSVRSAGR
CCCCHHHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCHHHHCCC
RPDAVRIPSADEALLRGVVDESVRAAGEAAGGRVAVICPPGRTAAIRAALRAAVPQLALP
CCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCC
RQPDDPDDRPTGTREPAEADLLDAPVAVLTVAESKGLEFDAVVLVEPAEILAGPTRGLAD
CCCCCCCCCCCCCCCCCCCHHHHCCEEEEEEECCCCCCEEEEEEECCHHHHCCCCCHHHH
LYVALTRATRVLTVVHTGELPGVLHRMPVRGGPATPEAGAAPRATSRTEAEARTAPAHTD
HHHHHHHHHHEEEEEECCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCC
IDDTDTDDTDTGDADTDAGLGDPVVGGRQLNLLW
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]