| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is pfpI [H]
Identifier: 158317334
GI number: 158317334
Start: 6770272
End: 6770859
Strand: Reverse
Name: pfpI [H]
Synonym: Franean1_5584
Alternate gene names: 158317334
Gene position: 6770859-6770272 (Counterclockwise)
Preceding gene: 158317335
Following gene: 158317333
Centisome position: 75.38
GC content: 71.26
Gene sequence:
>588_bases ATGACGAATCTCGGTCATGACGCGGGCCGCCGTGCGGACACCGCGCGCCAGGTCGCGTTCCTCACCGCGAAGGAAGGCGT TGAGCAGGTCGAGTTGACCGGACCCTGGCGGGCCGTGCGCGACGCCGGGTTCACCCCGGTCCTGGTCTCGACGGAGGAGG GGACGGTCCAGGCGTTCCACCATCTCGATCGCGCCGACACCTTCCCGGTGGACGCGACGGTCACCGGCGCCGACCCGGGT GGCTTCGACGCGTTGGTGCTTCCCGGCGGGGTAGCCAATCCGGACACCCTGCGCTGGCAGCCGGGCGTCGTGCCGTTCGT CCGGACCTTCTTCGACCGTGGTCTTCCAGTGGCCGTGATCTGCCACGGCCCGTGGACGTTGATCGAGGCCGACGTCGTCC GGGGCCGGCGGGTCACGAGCTGGCCGAGCCTGCGGACGGACCTGCGCAACGCCGGTGCCACCTGGGTCGACGACGAGGTC GTGATCTGCCGGTCGGGGCCCAATCCGCTGATCAGCAGCCGGCGGCCGGGTGATCTGCCGGCTTTCGAGTCCGCGCTCGT CGGTGAGCTGGCGCCGGCGCACGTCTGA
Upstream 100 bases:
>100_bases GGCAGCGGCCCCCGGCGGGTGACGGCCTCGGCACCACGGACAGGCTGCCCGGGACCGGGGCCCAGGCCGCTGAACGGATC TCAGCGAGGGAGTGAACAGC
Downstream 100 bases:
>100_bases ACGCGGCCCGGCGGGCTCCGCCGCGCGGCGGGCACGGCGACCGTCACCCCGGCCGTGGGCCGCGCGGCGCCGAGCTGGAC GTAGCCTGGGTGGTCGAGGA
Product: PfpI family intracellular peptidase
Products: NA
Alternate protein names: Intracellular protease I [H]
Number of amino acids: Translated: 195; Mature: 194
Protein sequence:
>195_residues MTNLGHDAGRRADTARQVAFLTAKEGVEQVELTGPWRAVRDAGFTPVLVSTEEGTVQAFHHLDRADTFPVDATVTGADPG GFDALVLPGGVANPDTLRWQPGVVPFVRTFFDRGLPVAVICHGPWTLIEADVVRGRRVTSWPSLRTDLRNAGATWVDDEV VICRSGPNPLISSRRPGDLPAFESALVGELAPAHV
Sequences:
>Translated_195_residues MTNLGHDAGRRADTARQVAFLTAKEGVEQVELTGPWRAVRDAGFTPVLVSTEEGTVQAFHHLDRADTFPVDATVTGADPG GFDALVLPGGVANPDTLRWQPGVVPFVRTFFDRGLPVAVICHGPWTLIEADVVRGRRVTSWPSLRTDLRNAGATWVDDEV VICRSGPNPLISSRRPGDLPAFESALVGELAPAHV >Mature_194_residues TNLGHDAGRRADTARQVAFLTAKEGVEQVELTGPWRAVRDAGFTPVLVSTEEGTVQAFHHLDRADTFPVDATVTGADPGG FDALVLPGGVANPDTLRWQPGVVPFVRTFFDRGLPVAVICHGPWTLIEADVVRGRRVTSWPSLRTDLRNAGATWVDDEVV ICRSGPNPLISSRRPGDLPAFESALVGELAPAHV
Specific function: Highly stable protease. Although the physiological function is unclear it is the dominant protease in P.furiosus [H]
COG id: COG0693
COG function: function code R; Putative intracellular protease/amidase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PfpI endopeptidase domain [H]
Homologues:
Organism=Escherichia coli, GI87082219, Length=168, Percent_Identity=38.6904761904762, Blast_Score=112, Evalue=2e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006286 - InterPro: IPR002818 [H]
Pfam domain/function: PF01965 DJ-1_PfpI [H]
EC number: NA
Molecular weight: Translated: 20938; Mature: 20807
Theoretical pI: Translated: 5.25; Mature: 5.25
Prosite motif: PS00213 LIPOCALIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNLGHDAGRRADTARQVAFLTAKEGVEQVELTGPWRAVRDAGFTPVLVSTEEGTVQAFH CCCCCCCCCCCHHHHHHHEEEEHHCCCEEEEECCCHHHHHHCCCCEEEEECCCCHHHHHH HLDRADTFPVDATVTGADPGGFDALVLPGGVANPDTLRWQPGVVPFVRTFFDRGLPVAVI HHCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCEEECCCCHHHHHHHHHCCCCEEEE CHGPWTLIEADVVRGRRVTSWPSLRTDLRNAGATWVDDEVVICRSGPNPLISSRRPGDLP ECCCCEEEEHHHHCCCCCCCCCHHHHHHHHCCCCEECCCEEEECCCCCCCCCCCCCCCCC AFESALVGELAPAHV HHHHHHHHCCCCCCC >Mature Secondary Structure TNLGHDAGRRADTARQVAFLTAKEGVEQVELTGPWRAVRDAGFTPVLVSTEEGTVQAFH CCCCCCCCCCHHHHHHHEEEEHHCCCEEEEECCCHHHHHHCCCCEEEEECCCCHHHHHH HLDRADTFPVDATVTGADPGGFDALVLPGGVANPDTLRWQPGVVPFVRTFFDRGLPVAVI HHCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCEEECCCCHHHHHHHHHCCCCEEEE CHGPWTLIEADVVRGRRVTSWPSLRTDLRNAGATWVDDEVVICRSGPNPLISSRRPGDLP ECCCCEEEEHHHHCCCCCCCCCHHHHHHHHCCCCEECCCEEEECCCCCCCCCCCCCCCCC AFESALVGELAPAHV HHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8626329 [H]