| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158317324
Identifier: 158317324
GI number: 158317324
Start: 6754895
End: 6756040
Strand: Reverse
Name: 158317324
Synonym: Franean1_5574
Alternate gene names: NA
Gene position: 6756040-6754895 (Counterclockwise)
Preceding gene: 158317325
Following gene: 158317321
Centisome position: 75.22
GC content: 73.65
Gene sequence:
>1146_bases ATGAGCTGCGACGGCCGCCGTCGGCACGGACGGTCCCGGGGCGGGCGGAACAACGAGGAGTGCGACATGTCCGTCCTGCA GTGCGGGTCCGGCGAGGTACCGGGGGAGCACTACCTGCCCTCGTCGCCCAAGACGGTCACCTGGGGCCGGCTGCCCAGCG CGGCGACCGACCCGGTGCTCGAAGTGGCGGCGGGCGCCACCGTCACCATCGACACCGTCTCGCACGAGGGCCTCATGGAG GACCAGGGCCGCGACCCGGTCGCCTTCTGGGCGGAGCACGCCGTCGCGGCGGATTCGGTCCTCCTCGACGCGATCGACAT CGCCCGGGACGTCTCCCACTACCGCGGGCTCGACGGCCCGCACGTGGTCACCGGTCCGGTGCGGGTCGACGGCGCGCGCC CCGGCGACATCCTCAAGGTCGAGTTCCTCGAGCTGCGCCCGCGGGTGCCCTACGGGCTCGTCTCCAGCCGGCACGGCCGG GGCGCGCTGCCCGGCGAGCTTCCCGTCGGCCCCGACGGCGTGCTCGCCGACCGTTACAGCCAGTTCTGCGAGGTGGACGT CGCCGCCGGGCGGGCCGTGATGCGCTACGGCGAGGGCCGGCAGATCAGCTTCCCGGTCGCGCCGTTCATGGGTCTCACCG GCCTCACCCCGGCCGGGGAGAAGGCCCTCAACACGACCCCGCCCGGGGCATTCGGCGGGAACCTCGACGTGCGCGACCTC GTCGCCGGGTCGACGCTCTACCTGCCGGTCCAGATCCCGGGCGCGGGCTTCTACACCGGTGATCCGCATTTCGCCCAGGG GCACGGCGAGGTGTCGCTGACCGCCCTGGAGGCCTCGCTGCGCACGACCGTCCGGCTCACCCCGCTTCCGGCCGCCGCGG CGCTGCCCTTCGGCGCGGGTTCCGGCGGCCCCTTCGGCGAGACCCCGGAGCACTGGATCGCCATCGGCCTGCACAACGAC CTCGACGAGGCCATGCGGCTGGCCGTCCGCGAGGCGCTGCGGGTGCTGCGCCAGGTCCGGGATGTCCCGGTGATGGTCGC GTACAGCTACCTGTCGGCCGCCGCCGACTTCGTGGTCAGCCAGGTCGTCGACGACGTGAAGGGCGTGCACTGCCTGATCC GCAAGCGCGACTTCCCGGCCTGGTAG
Upstream 100 bases:
>100_bases CAGTCGGCCTGGCGCGATGCGCGCGCGTCGGTGGCCACAAGTCCCCCAAGGTGTGAGACAGCGCGCCCGGGTTGGGCGTG ACCAGCTATTTCCTGGTGAG
Downstream 100 bases:
>100_bases CCGCGGCGCGGTCGTAGCGGCTGAAATTCAGGTCGGCCCGGCGGGCCGACCGGCGGCATTTCAGACCCGGAGGCGGTCGG CCAGCAGGCCGCGGTGGTGG
Product: acetamidase/formamidase
Products: NA
Alternate protein names: Formamidase; Acetamidase/Formamidase Family Protein; Amidase; Acetamidase; Acetamidase/Formamidase Protein; Transcriptional Regulator; Amidase-Related Protein; Acetamidase/Formamidase Family; AraC Family Transcriptional Regulator; Amidae; Twin-Arginine Translocation Pathway Signal; Formamidase/Acetamidase; Transcriptional Regulatory Protein; Transcription Regulator AraC Family; Helix-Turn-Helix Domain-Containing Protein
Number of amino acids: Translated: 381; Mature: 380
Protein sequence:
>381_residues MSCDGRRRHGRSRGGRNNEECDMSVLQCGSGEVPGEHYLPSSPKTVTWGRLPSAATDPVLEVAAGATVTIDTVSHEGLME DQGRDPVAFWAEHAVAADSVLLDAIDIARDVSHYRGLDGPHVVTGPVRVDGARPGDILKVEFLELRPRVPYGLVSSRHGR GALPGELPVGPDGVLADRYSQFCEVDVAAGRAVMRYGEGRQISFPVAPFMGLTGLTPAGEKALNTTPPGAFGGNLDVRDL VAGSTLYLPVQIPGAGFYTGDPHFAQGHGEVSLTALEASLRTTVRLTPLPAAAALPFGAGSGGPFGETPEHWIAIGLHND LDEAMRLAVREALRVLRQVRDVPVMVAYSYLSAAADFVVSQVVDDVKGVHCLIRKRDFPAW
Sequences:
>Translated_381_residues MSCDGRRRHGRSRGGRNNEECDMSVLQCGSGEVPGEHYLPSSPKTVTWGRLPSAATDPVLEVAAGATVTIDTVSHEGLME DQGRDPVAFWAEHAVAADSVLLDAIDIARDVSHYRGLDGPHVVTGPVRVDGARPGDILKVEFLELRPRVPYGLVSSRHGR GALPGELPVGPDGVLADRYSQFCEVDVAAGRAVMRYGEGRQISFPVAPFMGLTGLTPAGEKALNTTPPGAFGGNLDVRDL VAGSTLYLPVQIPGAGFYTGDPHFAQGHGEVSLTALEASLRTTVRLTPLPAAAALPFGAGSGGPFGETPEHWIAIGLHND LDEAMRLAVREALRVLRQVRDVPVMVAYSYLSAAADFVVSQVVDDVKGVHCLIRKRDFPAW >Mature_380_residues SCDGRRRHGRSRGGRNNEECDMSVLQCGSGEVPGEHYLPSSPKTVTWGRLPSAATDPVLEVAAGATVTIDTVSHEGLMED QGRDPVAFWAEHAVAADSVLLDAIDIARDVSHYRGLDGPHVVTGPVRVDGARPGDILKVEFLELRPRVPYGLVSSRHGRG ALPGELPVGPDGVLADRYSQFCEVDVAAGRAVMRYGEGRQISFPVAPFMGLTGLTPAGEKALNTTPPGAFGGNLDVRDLV AGSTLYLPVQIPGAGFYTGDPHFAQGHGEVSLTALEASLRTTVRLTPLPAAAALPFGAGSGGPFGETPEHWIAIGLHNDL DEAMRLAVREALRVLRQVRDVPVMVAYSYLSAAADFVVSQVVDDVKGVHCLIRKRDFPAW
Specific function: Unknown
COG id: COG2421
COG function: function code C; Predicted acetamidase/formamidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40507; Mature: 40376
Theoretical pI: Translated: 5.75; Mature: 5.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSCDGRRRHGRSRGGRNNEECDMSVLQCGSGEVPGEHYLPSSPKTVTWGRLPSAATDPVL CCCCCCHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHH EVAAGATVTIDTVSHEGLMEDQGRDPVAFWAEHAVAADSVLLDAIDIARDVSHYRGLDGP HHHCCCEEEEEECCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC HVVTGPVRVDGARPGDILKVEFLELRPRVPYGLVSSRHGRGALPGELPVGPDGVLADRYS EEEECCEEECCCCCCCEEEEEEEECCCCCCCCHHCCCCCCCCCCCCCCCCCCCHHHHHHH QFCEVDVAAGRAVMRYGEGRQISFPVAPFMGLTGLTPAGEKALNTTPPGAFGGNLDVRDL HHHHHHHHHCHHHHHCCCCCEEECCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH VAGSTLYLPVQIPGAGFYTGDPHFAQGHGEVSLTALEASLRTTVRLTPLPAAAALPFGAG HCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEHHHEEEEEECCCCHHHHCCCCCC SGGPFGETPEHWIAIGLHNDLDEAMRLAVREALRVLRQVRDVPVMVAYSYLSAAADFVVS CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH QVVDDVKGVHCLIRKRDFPAW HHHHHHHHHEEEEECCCCCCC >Mature Secondary Structure SCDGRRRHGRSRGGRNNEECDMSVLQCGSGEVPGEHYLPSSPKTVTWGRLPSAATDPVL CCCCCHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHH EVAAGATVTIDTVSHEGLMEDQGRDPVAFWAEHAVAADSVLLDAIDIARDVSHYRGLDGP HHHCCCEEEEEECCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC HVVTGPVRVDGARPGDILKVEFLELRPRVPYGLVSSRHGRGALPGELPVGPDGVLADRYS EEEECCEEECCCCCCCEEEEEEEECCCCCCCCHHCCCCCCCCCCCCCCCCCCCHHHHHHH QFCEVDVAAGRAVMRYGEGRQISFPVAPFMGLTGLTPAGEKALNTTPPGAFGGNLDVRDL HHHHHHHHHCHHHHHCCCCCEEECCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH VAGSTLYLPVQIPGAGFYTGDPHFAQGHGEVSLTALEASLRTTVRLTPLPAAAALPFGAG HCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEHHHEEEEEECCCCHHHHCCCCCC SGGPFGETPEHWIAIGLHNDLDEAMRLAVREALRVLRQVRDVPVMVAYSYLSAAADFVVS CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH QVVDDVKGVHCLIRKRDFPAW HHHHHHHHHEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA