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The map label for this gene is nodB [H]

Identifier: 158317266

GI number: 158317266

Start: 6681344

End: 6682102

Strand: Reverse

Name: nodB [H]

Synonym: Franean1_5514

Alternate gene names: 158317266

Gene position: 6682102-6681344 (Counterclockwise)

Preceding gene: 158317270

Following gene: 158317264

Centisome position: 74.39

GC content: 76.94

Gene sequence:

>759_bases
ATGGTGCGGTCCGGCACGGGGCGGTGGGAGACGGGGCGGTGGGCCGCGGGTGGCGCGGTCATGGCGCTCAGTGCACTGGC
CTACGGCCTGCCGTCACTGGCCACGTTCCGTCGGCTGCGCACCCGGGTGACCCCAGGGCTCGCCGGGGTGGGCCGGCCCG
ACCACGTCGCGCTCACGTTCGACGACGGTCCCGACCCGGCCTCGACGCCGCGCTTCCTCGAGGTGCTCGACGCGCTCGAG
ATCCGTTCGACGTTCTTCGTGCTCGGTGGGATGCTCGAGCGCGCCCCCGGCCTCGCCCGGGAGATGACCGAGGCCGGGCA
CGAGCTGGCCGTCCACGGGTGGGATCACCGGCCCATGCTGCTGCGCGGGCCGGCGTCCACCTACGACCAGCTCGCGCGCA
CCCGTGACCTGATCGCCGAGACCACCGGCCGGGCGCCGGCCTACGTTCGCCCGCCGCACGGGGTGCTCTCGGTCGGGGTG
CTCGCCGCCGCGCGCCGCCTCGACCTCACCCCCGTCCTGTGGACGGCGTGGGGCCGCGACTGGACGGCGACGGCGACCCC
GGCCAACGTGCTGGCGACGCTCGCCCCCGATCTGCGCGGCGGCGCGACGGTGCTGCTGCACGACAGCGACTGCACGTCCG
CGCCGGGAGCCTGGCGCAGCGCGCTGGGCGCCCTGCCCGAGCTGGCGGCGCGCTGCGACGACGCGAGCCTGCGCCTCGGG
CCGCTCGCCGAGCACGGCCTGCGCCCCGTCTCGAGGTAG

Upstream 100 bases:

>100_bases
GGGACACGGTGACGGCCGGACCACGGTGACGGCCGGACCACGGCGACGGGCGGTGCGCGTGCCACCGGGGGGCGGCGCGG
GGTGTGGCACAGTGTCCGTC

Downstream 100 bases:

>100_bases
CGGCCCGGCCCGAGCATGCTCGGGCCGGGCCGCGGCACCCTGATCAGGTCTCGGGGTGGAGCCTGATCACGTCTCCGGGT
AGAGGGAGTAGGAGGGGAAG

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Nodulation protein B [H]

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MVRSGTGRWETGRWAAGGAVMALSALAYGLPSLATFRRLRTRVTPGLAGVGRPDHVALTFDDGPDPASTPRFLEVLDALE
IRSTFFVLGGMLERAPGLAREMTEAGHELAVHGWDHRPMLLRGPASTYDQLARTRDLIAETTGRAPAYVRPPHGVLSVGV
LAAARRLDLTPVLWTAWGRDWTATATPANVLATLAPDLRGGATVLLHDSDCTSAPGAWRSALGALPELAARCDDASLRLG
PLAEHGLRPVSR

Sequences:

>Translated_252_residues
MVRSGTGRWETGRWAAGGAVMALSALAYGLPSLATFRRLRTRVTPGLAGVGRPDHVALTFDDGPDPASTPRFLEVLDALE
IRSTFFVLGGMLERAPGLAREMTEAGHELAVHGWDHRPMLLRGPASTYDQLARTRDLIAETTGRAPAYVRPPHGVLSVGV
LAAARRLDLTPVLWTAWGRDWTATATPANVLATLAPDLRGGATVLLHDSDCTSAPGAWRSALGALPELAARCDDASLRLG
PLAEHGLRPVSR
>Mature_252_residues
MVRSGTGRWETGRWAAGGAVMALSALAYGLPSLATFRRLRTRVTPGLAGVGRPDHVALTFDDGPDPASTPRFLEVLDALE
IRSTFFVLGGMLERAPGLAREMTEAGHELAVHGWDHRPMLLRGPASTYDQLARTRDLIAETTGRAPAYVRPPHGVLSVGV
LAAARRLDLTPVLWTAWGRDWTATATPANVLATLAPDLRGGATVLLHDSDCTSAPGAWRSALGALPELAARCDDASLRLG
PLAEHGLRPVSR

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323339, Length=160, Percent_Identity=28.75, Blast_Score=68, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6323338, Length=126, Percent_Identity=32.5396825396825, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 26817; Mature: 26817

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRSGTGRWETGRWAAGGAVMALSALAYGLPSLATFRRLRTRVTPGLAGVGRPDHVALTF
CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEE
DDGPDPASTPRFLEVLDALEIRSTFFVLGGMLERAPGLAREMTEAGHELAVHGWDHRPML
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCEEEEECCCCCCEE
LRGPASTYDQLARTRDLIAETTGRAPAYVRPPHGVLSVGVLAAARRLDLTPVLWTAWGRD
EECCCHHHHHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHCCCCHHHEECCCCC
WTATATPANVLATLAPDLRGGATVLLHDSDCTSAPGAWRSALGALPELAARCDDASLRLG
CCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEC
PLAEHGLRPVSR
CHHHHCCCCCCC
>Mature Secondary Structure
MVRSGTGRWETGRWAAGGAVMALSALAYGLPSLATFRRLRTRVTPGLAGVGRPDHVALTF
CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEE
DDGPDPASTPRFLEVLDALEIRSTFFVLGGMLERAPGLAREMTEAGHELAVHGWDHRPML
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCEEEEECCCCCCEE
LRGPASTYDQLARTRDLIAETTGRAPAYVRPPHGVLSVGVLAAARRLDLTPVLWTAWGRD
EECCCHHHHHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHCCCCHHHEECCCCC
WTATATPANVLATLAPDLRGGATVLLHDSDCTSAPGAWRSALGALPELAARCDDASLRLG
CCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEC
PLAEHGLRPVSR
CHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3960737 [H]